BAC Information

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BAC

Clone NameB6Ng01-009M03
Chromosome2 (Build37)
Map Location 38,710,794 - 38,849,782
singlet/doubletdoublet
Overlap geneNr6a1, Olfml2a, LOC624652
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1
Downstream geneLOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009M03.bB6Ng01-009M03.g
ACCDH845615DH845616
length506913
definitionDH845615|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M03, 5' end.DH845616|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,710,794 - 38,711,305)(38,848,866 - 38,849,782)
sequence
agttacaagaaagcagggaaagtgtgaggttggctgtctgacacatctag
tgctgcttgttaaaaatgcatattcctagccgggtgtggtggcacacgcc
tttaatcccagtactcgggaggcagaggaaggtggatttctgagtttgag
gccagcctggtctacaaagtgagttccaggacagccagggctacacagag
aaaccctgtctcgaaaaaccaaaaaaacacaaaacaaaacaaaaaagcat
attcctctgtatcactgcaaaccagagacaaggtgcgttctcaaacacag
aaggcttgcctaaagcaaagcaaatggaccagtataatgttggctaccta
ttccctccggccacatttcatgctgtccactttccaactatcacctgata
tgccctgcaccactcctcaaggtgcaaagacactggtgttgctgttgagt
acttcattccaaaactacctgtctggagctttattgaagtaagtatatac
gtgttt
gaattctaagacaggtcagtatgaagcagatctgcagtttattaagagag
actaatttcaatggaagtccaagtgctaatagaatctcagaggaaggcac
agctatgtgagcatgtaggcctctcaagggatggtcgtatttaagccata
gccatatatatgatctcgaggactctcaattagatttgtaaagatagcta
agcaactttgccctcatttttttttccttttcagtaagtgaggttatggg
atggctcggggcggggggtgcctttggtagaatttcagtcggataagata
aaactctttgtcaaaaggtggttaagacatgtcttgccgggcgtggtggc
acacacctttaatcccagcactccggagacagaggcaggtggatttctga
gttcgaggccagcctggtctacaaagtgagttccaggacagccagagcta
tacagagaaaccctgtctcaaaaaactaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaacctcaaaaaaaaagacatgtcttagtgtacatggggtt
tcttatgagaggcctagaaaactgcacacacacaaatagaaatgggcaag
gtgacatacgcctcgagcttggcttatgcctggtttagcatttttacttg
cagcctctctacatgaaaggaatattgtctctatgtaggtgacctttcac
atttcttctcttgagtcagggtcttgttatgtagcccagactggccttca
gtttgtagcaagcctcttgcttcgtctcaattaaagtctgcctggtcaaa
atgtaattgtgttggagctctttacattctgattttattttgaagtgcgt
gtgtgtgtgtgtggggtgtgtatcatgtacatacatgggtgggagtatgt
gcacatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38710794_38711305
seq2: B6Ng01-009M03.b_46_557

seq1  GAATTCAGTTACAAGAAAGCAGGGAAAGTGTGAGGTTGGCTGTCTGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTACAAGAAAGCAGGGAAAGTGTGAGGTTGGCTGTCTGACAC  50

seq1  ATCTAGTGCTGCTTGTTAAAAATGCATATTCCTAGCCGGGTGTGGTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTGCTGCTTGTTAAAAATGCATATTCCTAGCCGGGTGTGGTGGCA  100

seq1  CACGCCTTTAATCCCAGTACTCGGGAGGCAGAGGAAGGTGGATTTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCCCAGTACTCGGGAGGCAGAGGAAGGTGGATTTCTGAG  150

seq1  TTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC  200

seq1  ACAGAGAAACCCTGTCTCGAAAAACCAAAAAAACACAAAACAAAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCGAAAAACCAAAAAAACACAAAACAAAACAAAA  250

seq1  AAGCATATTCCTCTGTATCACTGCAAACCAGAGACAAGGTGCGTTCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATTCCTCTGTATCACTGCAAACCAGAGACAAGGTGCGTTCTCAA  300

seq1  ACACAGAAGGCTTGCCTAAAGCAAAGCAAATGGACCAGTATAATGTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGGCTTGCCTAAAGCAAAGCAAATGGACCAGTATAATGTTGGC  350

seq1  TACCTATTCCCTCCGGCCACATTTCATGCTGTCCACTTTCCAACTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTCCCTCCGGCCACATTTCATGCTGTCCACTTTCCAACTATCAC  400

seq1  CTGATATGCCCTGCACCACTCCTCAAGGTGCAAAGACACTGGTGTTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGCCCTGCACCACTCCTCAAGGTGCAAAGACACTGGTGTTGCTG  450

seq1  TTGAGTACTTCATTCCAAAACTACCTGCCTGGAGCTTTACAGAAGTAAGT  500
      ||||||||||||||||||||||||||| |||||||||||  |||||||||
seq2  TTGAGTACTTCATTCCAAAACTACCTGTCTGGAGCTTTATTGAAGTAAGT  500

seq1  ATATACGTGTTT  512
      ||||||||||||
seq2  ATATACGTGTTT  512

seq1: chr2_38848866_38849782
seq2: B6Ng01-009M03.g_71_983 (reverse)

seq1  CACACACATGTGCACATACCTTCCCACCCATGTATGTACATGATACACAC  50
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  CACACACATGTGCACATAC--TCCCACCCATGTATGTACATGATACACAC  48

seq1  ACACACACACACACACACGCACTTCAAAATAAAATCAGATTGTAAAGAGC  100
       | |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  -CCCACACACACACACACGCACTTCAAAATAAAATCAGAATGTAAAGAGC  97

seq1  TCCAACACAATTAACATTTTGACCAGGCAGACTTTAATCTGAGACGAAGC  150
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TCCAACACAATT-ACATTTTGACCAGGCAGACTTTAAT-TGAGACGAAGC  145

seq1  AAGAGGCTTGCTACAAACTGAAGGCCAGTCTGGGCTACATAACAAGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTTGCTACAAACTGAAGGCCAGTCTGGGCTACATAACAAGACCC  195

seq1  TGACTCAAGAGAAGAAATGTG-AAGGTCACCTACATAGAGACAATATTCC  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGACTCAAGAGAAGAAATGTGAAAGGTCACCTACATAGAGACAATATTCC  245

seq1  TTTCATGTAGAGAGGCTGCAAGTAAAAATGCTAAACCAGGCATAAGCCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTAGAGAGGCTGCAAGTAAAAATGCTAAACCAGGCATAAGCCAA  295

seq1  GCTCGAGGCGTATGTCACCTTGCCCATTTCTATTTGTGTGTGTGCAGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGGCGTATGTCACCTTGCCCATTTCTATTTGTGTGTGTGCAGTTT  345

seq1  TCTAGGCCTCTCATAAGAAACCCCATGTACACTAAGACATGTCTTTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCTCTCATAAGAAACCCCATGTACACTAAGACATGTCTTTTTTT  395

seq1  TTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTTTTG  449
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTTTTG  445

seq1  AGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAG  495

seq1  ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGTCTCCGGAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGTCTCCGGAGTG  545

seq1  CTGGGATTAAAGGTGTGTGCCACCACGCCCGGCAAGACATGTCTTAACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGTGTGTGCCACCACGCCCGGCAAGACATGTCTTAACCA  595

seq1  CCTTTTGACAAAGAGTTTTATCTTATCCGACTGAAATTCTACCAAAGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGACAAAGAGTTTTATCTTATCCGACTGAAATTCTACCAAAGGCA  645

seq1  CCCCCCGCCCCGAGCCATCCCATAACCTCACTTACTGAAAAGGAAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGCCCCGAGCCATCCCATAACCTCACTTACTGAAAAGGAAAAAAA  695

seq1  AATGAGGGCAAAGTTGCTTAGCTATCTTTACAAATCTAATTGAGAGTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGCAAAGTTGCTTAGCTATCTTTACAAATCTAATTGAGAGTCCT  745

seq1  CGAGATCATATATATGGCTATGGCTTAAATACGACCATCCCTTGAGAGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATCATATATATGGCTATGGCTTAAATACGACCATCCCTTGAGAGGC  795

seq1  CTACATGCTCACATAGCTGTGCCTTCCTCTGAGATTCTATTAGCACTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCTCACATAGCTGTGCCTTCCTCTGAGATTCTATTAGCACTTGG  845

seq1  ACTTCCATTGAAATTAGTCTCTCTTAATAAACTGCAGATCTGCTTCATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATTGAAATTAGTCTCTCTTAATAAACTGCAGATCTGCTTCATAC  895

seq1  TGACCTGTCTTAGAATTC  917
      ||||||||||||||||||
seq2  TGACCTGTCTTAGAATTC  913