BAC Information

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BAC

Clone NameB6Ng01-009N22
Chromosome2 (Build37)
Map Location 53,832,717 - 53,952,398
singlet/doubletdoublet
Overlap geneRprm
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneLOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009N22.bB6Ng01-009N22.g
ACCDH845697DH845698
length1,1501,115
definitionDH845697|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N22, 5' end.DH845698|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,951,244 - 53,952,398)(53,832,717 - 53,833,833)
sequence
gaattcctcttgaaattattccagaaattgtatacaggaataaaagaggc
aatcttatagtttcctttttgcatcaattcttcatcaagtctcacactct
aatattaactaaatattttgcatttaatgtataagtaattactctcattt
tgaagaataacggcactgtagaggaaataaagattgattaacttaaaaac
cattcctataaaacagtaaaaaaaaaaattcagagggaatagtacctgaa
atgcagtcccacctagcgggttcatgctcaatatagagtctgatgcaaca
agaaaaggaacggttccaaggctcagctgatgtgcactaaatgctcaatg
ccccatccacacagcaagctgcctgtggtcttagcaccactgtcccagga
aagattcacctatgaaggatttccagcacagaggcatctcacaattctgg
gaacacaaactggagcccctgctcccagcgaacctcagaataatgtgcct
ttcaaaacacttggaagaaagtaggcagaatatgaaacctggagcaaaat
caggatcagatacaagccatacagtggatgtagcagtgtaagtatagtag
tgatgtttaaagctgaaagactctctataactcagttgtagaacatggaa
cccatcaggacatatagcccaaagcaatagtcccctagtcccacaggctg
tagaaacaaccgaaatttaagggactctgaagccaaaagaattgcaatac
cacttaccatggcaatagaagggaaggctgcataggtcaaaggaagtttg
tcaagaacttagtgcagtgtattagaggatagaactatgggacgcaagtc
aagaacatagtctattctcctgtacctgagactggcagggctcctatcaa
accattataattgttaccaaaattgatttgtatcttgtagattaatctaa
ggaaatataactcaacaagaatcctcagtgtatgtcctctggaggagcag
ctggtaatcttagcattggagccatttttctagccaggatgggtaccaca
gctttaatgagttggagaaaaataatgtcattcagtacttttataagaat
catgtggggagaatggtcggcaaagttaataaattaggaatatgtgatga

gaattcagttactcttgtatgtaaataaactcttatcatcctctccccat
ttcttattcatattctagagtcacagattaagattttaaaagaatggaaa
aattacataaggaaattatgaccttatgaaaattcagctttgatgcttat
tctagaggctaggatgtgaatgtaaaaatacatatttgaaagcaaagata
tgaaagccaatccatcaaagaaatctaggtatgagattgttgcttttgaa
acaataagaaagcaaaatgatatgagactctatgaagatctcatgaacag
ttttaataatatgccatgttatattgtctcatcattaaattaaacaatag
gatagaacagaagtgtgcaagacatgtaatccccctacacacacacacac
acacacacacacacacacacacatacacacacacacacacacacacacac
acacacacacaggattttacatgtatcacttggttttctgtcaatgagta
cttaatgaagaacaccatgcccatgccatggcttgcctagatgctctgat
tctaattactgcatttgtgtcagttaatttgttttgatttgattttgaaa
aacttggttgtaaaggagtttcatttcatcacttaaggtattaatatatt
ctccttctcttttggaagaaatcaggcataaaatattgttagtgaattta
tgcattatgaacaagaagctctgaatttatttgctgcttctgagaggttt
gtagctcttcaagatgcagaaaatgcttatttttttcttatatgaataaa
atgtctcttagtacagcctttaaatagttgttgaaagtggcttttaatgc
cttgaaagctttacatttcaactcctttaatccatgagtataaacagatg
atctttttaaaaatgaaatggtgcgactaaaaactcccatagcaaagctt
catagtcttctagttgaagtgtcctactagtagtgtaaagagcaaagaag
atatggcagactagcacttaagagtcaggagtagctccatgagagaaaat
gcatatttagaacttaatgtgaattctttcttccaaaaagaagtatcttg
gaaacttgtggaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_53951244_53952398
seq2: B6Ng01-009N22.b_47_1196 (reverse)

seq1  TCATCACATATTCCCATATTAATTAACCTTTTGCAGA-CATGCTTCCACA  49
      |||||||||||||| | ||| ||||||  ||||| || ||| | ||| ||
seq2  TCATCACATATTCCTA-ATTTATTAAC--TTTGCCGACCATTC-TCCCCA  46

seq1  C-TGA-TCTGATAAAAAGTTACTGAAATGACATTATTTTTCTCCAACTCA  97
      | ||| ||| ||||||   ||||| |||||||||||||||||||||||||
seq2  CATGATTCTTATAAAA--GTACTG-AATGACATTATTTTTCTCCAACTCA  93

seq1  TTTAAAGCTGTGGTAACCATCCTGGCTAGAAAAATGGCTCAATGGCTAAG  147
       |||||||||||||| |||||||||||||||||||||||| |  ||||||
seq2  -TTAAAGCTGTGGTACCCATCCTGGCTAGAAAAATGGCTCCAATGCTAAG  142

seq1  ATTACCAGCTGCTCTTCCAGAGGACATACACTGAGGATTCTTGTTGAGTT  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTACCAGCTGCTCCTCCAGAGGACATACACTGAGGATTCTTGTTGAGTT  192

seq1  ATATTTCCTTAGATTAATCTACAAGATACAAATCAATTTTGGTAACAATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTTAGATTAATCTACAAGATACAAATCAATTTTGGTAACAATT  242

seq1  ATAATGGTTTGATAGGAGCCCTGCCAGTCTCAGGTACAGGAGAATAGACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGTTTGATAGGAGCCCTGCCAGTCTCAGGTACAGGAGAATAGACT  292

seq1  ATGTTCTTGACTTGCGTCCCATAGTTCTATCCTCTAATACACTGCACTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTGACTTGCGTCCCATAGTTCTATCCTCTAATACACTGCACTAA  342

seq1  GTTCTTGACAAACTTCCTTTGACCTATGCAGCCTTCCCTTCTATTGCCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGACAAACTTCCTTTGACCTATGCAGCCTTCCCTTCTATTGCCAT  392

seq1  GGTAAGTGGTATTGCAATTCTTTTGGCTTCAGAGTCCCTTAAATTTCGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGGTATTGCAATTCTTTTGGCTTCAGAGTCCCTTAAATTTCGGT  442

seq1  TGTTTCTACAGCCTGTGGGACTAGGGGACTATTGCTTTGGGCTATATGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTACAGCCTGTGGGACTAGGGGACTATTGCTTTGGGCTATATGTC  492

seq1  CTGATGGGTTCCATGTTCTACAACTGAGTTATAGAGAGTCTTTCAGCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGTTCCATGTTCTACAACTGAGTTATAGAGAGTCTTTCAGCTTT  542

seq1  AAACATCACTACTATACTTACACTGCTACATCCACTGTATGGCTTGTATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCACTACTATACTTACACTGCTACATCCACTGTATGGCTTGTATC  592

seq1  TGATCCTGATTTTGCTCCAGGTTTCATATTCTGCCTACTTTCTTCCAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGATTTTGCTCCAGGTTTCATATTCTGCCTACTTTCTTCCAAGT  642

seq1  GTTTTGAAAGGCACATTATTCTGAGGTTCGCTGGGAGCAGGGGCTCCAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAAGGCACATTATTCTGAGGTTCGCTGGGAGCAGGGGCTCCAGT  692

seq1  TTGTGTTCCCAGAATTGTGAGATGCCTCTGTGCTGGAAATCCTTCATAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCCCAGAATTGTGAGATGCCTCTGTGCTGGAAATCCTTCATAGG  742

seq1  TGAATCTTTCCTGGGACAGTGGTGCTAAGACCACAGGCAGCTTGCTGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTTCCTGGGACAGTGGTGCTAAGACCACAGGCAGCTTGCTGTGT  792

seq1  GGATGGGGCATTGAGCATTTAGTGCACATCAGCTGAGCCTTGGAACCGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGCATTGAGCATTTAGTGCACATCAGCTGAGCCTTGGAACCGTT  842

seq1  CCTTTTCTTGTTGCATCAGACTCTATATTGAGCATGAACCCGCTAGGTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTGTTGCATCAGACTCTATATTGAGCATGAACCCGCTAGGTGG  892

seq1  GACTGCATTTCAGGTACTATTCCCTCTGAATTTTTTTTTTTACTGTTTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATTTCAGGTACTATTCCCTCTGAATTTTTTTTTTTACTGTTTTA  942

seq1  TAGGAATGGTTTTTAAGTTAATCAATCTTTATTTCCTCTACAGTGCCGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGGTTTTTAAGTTAATCAATCTTTATTTCCTCTACAGTGCCGTT  992

seq1  ATTCTTCAAAATGAGAGTAATTACTTATACATTAAATGCAAAATATTTAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAAAATGAGAGTAATTACTTATACATTAAATGCAAAATATTTAG  1042

seq1  TTAATATTAGAGTGTGAGACTTGATGAAGAATTGATGCAAAAAGGAAACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTAGAGTGTGAGACTTGATGAAGAATTGATGCAAAAAGGAAACT  1092

seq1  ATAAGATTGCCTCTTTTATTCCTGTATACAATTTCTGGAATAATTTCAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTGCCTCTTTTATTCCTGTATACAATTTCTGGAATAATTTCAAG  1142

seq1  AGGAATTC  1155
      ||||||||
seq2  AGGAATTC  1150

seq1: chr2_53832717_53833833
seq2: B6Ng01-009N22.g_67_1181

seq1  GAATTCAGTTACTCTTGTATGTAAATAAACTCTTATCATCCTCTCCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTACTCTTGTATGTAAATAAACTCTTATCATCCTCTCCCCAT  50

seq1  TTCTTATTCATATTCTAGAGTCACAGATTAAGATTTTAAAAGAATGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTCATATTCTAGAGTCACAGATTAAGATTTTAAAAGAATGGAAA  100

seq1  AATTACATAAGGAAATTATGACCTTATGAAAATTCAGCTTTGATGCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATAAGGAAATTATGACCTTATGAAAATTCAGCTTTGATGCTTAT  150

seq1  TCTAGAGGCTAGGATGTGAATGTAAAAATACATATTTGAAAGCAAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGCTAGGATGTGAATGTAAAAATACATATTTGAAAGCAAAGATA  200

seq1  TGAAAGCCAATCCATCAAAGAAATCTAGGTATGAGATTGTTGCTTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCAATCCATCAAAGAAATCTAGGTATGAGATTGTTGCTTTTGAA  250

seq1  ACAATAAGAAAGCAAAATGATATGAGACTCTATGAAGATCTCATGAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAGAAAGCAAAATGATATGAGACTCTATGAAGATCTCATGAACAG  300

seq1  TTTTAATAATATGCCATGTTATATTGTCTCATCATTAAATTAAACAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAATATGCCATGTTATATTGTCTCATCATTAAATTAAACAATAG  350

seq1  GATAGAACAGAAGTGTGCAAGACATGTAATCCCCCTACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACAGAAGTGTGCAAGACATGTAATCCCCCTACACACACACACAC  400

seq1  ACACACACACACACACACACACATACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACATACACACACACACACACACACACACAC  450

seq1  ACACACACACAGGATTTTACATGTATCACTTGGTTTTCTGTCAATGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGGATTTTACATGTATCACTTGGTTTTCTGTCAATGAGTA  500

seq1  CTTAATGAAGAACACCATGCCCATGCCATGGCTTGCCTAGATGCTCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGAAGAACACCATGCCCATGCCATGGCTTGCCTAGATGCTCTGAT  550

seq1  TCTAATTACTGCATTTGTGTCAGTTAATTTGTTTTGATTTGATTTTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTACTGCATTTGTGTCAGTTAATTTGTTTTGATTTGATTTTGAAA  600

seq1  AACTTGGTTGTAAAGGAGTTTCATTTCATCACTTAAGGTATTAATATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTTGTAAAGGAGTTTCATTTCATCACTTAAGGTATTAATATATT  650

seq1  CTCCTTCTCTTTTGGAAGAAATCAGGCATAAAATATTGTTAGTGAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCTTTTGGAAGAAATCAGGCATAAAATATTGTTAGTGAATTTA  700

seq1  TGCATTATGAACAAGAAGCTCTGAATTTATTTGCTGCTTCTGAGAGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATGAACAAGAAGCTCTGAATTTATTTGCTGCTTCTGAGAGGTTT  750

seq1  GTAGCTCTTCAAGATGCAGAAAATGCTTATTTTTTTCTTATATGAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTTCAAGATGCAGAAAATGCTTATTTTTTTCTTATATGAATAAA  800

seq1  ATGTCTCTTAGTACAGCCTTTAAATAGTTGTTGAAAGTGGCTTTTAATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTTAGTACAGCCTTTAAATAGTTGTTGAAAGTGGCTTTTAATGC  850

seq1  CTTGAAAGCTTTACATTTCAACTCCTTTAATCCATGAGTATAAACAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGCTTTACATTTCAACTCCTTTAATCCATGAGTATAAACAGATG  900

seq1  ATCTTTTTAAAAATGAAATGGTGCGACTAAAAACTCCCCATAGCAAAGCT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCTTTTTAAAAATGAAATGGTGCGACTAAAAACT-CCCATAGCAAAGCT  949

seq1  TCATAGTCTTCTAGTTGAAGTGTCCTACTAGTAGTGTAAAGAGCAAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTCTTCTAGTTGAAGTGTCCTACTAGTAGTGTAAAGAGCAAAGAA  999

seq1  GATATGGCAGACTAGCACTCAAGAGTCAGGAGTAGCT-CATGAGAGAAAA  1049
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GATATGGCAGACTAGCACTTAAGAGTCAGGAGTAGCTCCATGAGAGAAAA  1049

seq1  TGCATATTTAGAACTT-ATGTGAATTCTTTCTTCCAGAAAAGGAAGTATA  1098
      |||||||||||||||| ||||||||||||||||||  |||| ||||||| 
seq2  TGCATATTTAGAACTTAATGTGAATTCTTTCTTCC--AAAAAGAAGTAT-  1096

seq1  CTTTGGGAAC-TGTGGAATG  1117
        |||| ||| |||||||||
seq2  -CTTGGAAACTTGTGGAATG  1115