BAC Information

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BAC

Clone NameB6Ng01-009P05
Chromosome2 (Build37)
Map Location 119,050,307 - 119,212,691
singlet/doubletdoublet
Overlap genePpp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1
Upstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19
Downstream geneLOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009P05.bB6Ng01-009P05.g
ACCDH845757DH845758
length1,093696
definitionDH845757|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P05, 5' end.DH845758|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,050,307 - 119,051,412)(119,212,082 - 119,212,691)
sequence
gaattcaaagcccacctggaaaatttagtaatcccctatctcaaaattaa
gagtaaaagactggcaaaggggtgtccagggatgcagctgaggtggtaga
gtgcttgcctaacatgcacaggcaacctcacaaaccaggcatggggacac
aggtctgtacccagcacctgggagatggagcttgaagggttaggagttca
aggccattctcagttccataaaaagttcgaagccagtcttggctatatta
gatcctatctcaaagaaaacaaaaacaaaaaaaaacaaacaaacaaaaaa
aaaacccaaccaaccaacaaagcccagacaagcagacaagcagacagatg
gattaaatggatggaacttagtggtaaaggtcttgttttgcttgcctctt
atacatgaggtcctgagtttaatcttcagtacctttcatagtaatagtaa
taataacaataaattaataaaacctataaaatgtgtggtggcacaagcct
atactctcagcactcaggaagcagaagcaggaacattgctgagagtttga
ggccaacctgagctacatagtgaattctaggccaaccagggctacacagc
aagactctctcaaagcaccaagaataaaataaaagagacatggaaagtcc
ccggaagtgatcttattttaaataaaagctttacctgatgggattaacag
catatttaattccgtagaaaaacggtttgagaagcagcccagggtgtggt
catggagtagaaggtagaacagatccttggcctgcccattatccatcatc
taacacttgtggatcagaatctcagaggcagaagagtcaggacacgtgat
gccagctactctgaagtttggtttcaaggctattttagccataagtcaga
tcctgtctcaaactaatacatcattaaaggttaggattgggggccactga
agtgtctgagtggctggagtgttccttgcctaaacctgacaactgaggtt
tgagtcctgggatctacataaatgtaagaaaagtacctcactaagctgtc
tccctctcatacctggggcaggatcttcacttatatatctatc
gaattcaaggttaacctggactacatagaaaaataacaggaaagagcaaa
acaaaaattacataatataaaagagctcgtggggtatttaaatcatagac
ttaaaagcatagtagtatgcactcataatccaagcactcatgaggaagat
acagaatgatcactgtaagctcaggttagcctggcccatatagtgatatc
ctgtttcaaaaaataaaaacaaaagcaaggaactggaaagatggctcagt
ggttaagagggtgcactgctcttccagatgacccagttttgattaacagc
acctacatgggtgctcacagacatacatgcaattatctatctatctatct
atctatctatctatctatctatctatctatctatcttatttatttattta
tttatttatttatttatttatttatttatttatttatttttggttttccg
agacagggcttctctgtgtagccctggctgtcctggaactcactttgtag
accaggctggcctcaaactcagaaatcttcctgtctctgcctcctgagtg
ctgggattaaaggcgtgcaccaccatcgcccagctgcagttctttacttt
aaatattgatgcttttttgtgtatcattacccagggtccagattgtgcac
agaataacataattgctccaaatttaaataagtacacaaataaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119050307_119051412
seq2: B6Ng01-009P05.b_47_1139

seq1  GAATTCAAAGCCCACCTGGAAAATTTAGTAATCCCCTATCTCAAAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCCACCTGGAAAATTTAGTAATCCCCTATCTCAAAATTAA  50

seq1  GAGTAAAAGACTGGCAAAGGGGTGTCCAGGGATGCAGCTGAGGTGGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAAGACTGGCAAAGGGGTGTCCAGGGATGCAGCTGAGGTGGTAGA  100

seq1  GTGCTTGCCTAACATGCACAGGCAACCTCACAAACCAGGCATGGGGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCCTAACATGCACAGGCAACCTCACAAACCAGGCATGGGGACAC  150

seq1  AGGTCTGTACCCAGCACCTGGGAGATGGAGCTTGAAGGGTTAGGAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTACCCAGCACCTGGGAGATGGAGCTTGAAGGGTTAGGAGTTCA  200

seq1  AGGCCATTCTCAGTTCCATAAAAAGTTCGAAGCCAGTCTTGGCTATATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTCTCAGTTCCATAAAAAGTTCGAAGCCAGTCTTGGCTATATTA  250

seq1  GATCCTATCTCAAAGAAAACAAAAACAAAAAAAAACAAACAAACAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTATCTCAAAGAAAACAAAAACAAAAAAAAACAAACAAACAAAAAA  300

seq1  AAAACCCAACCAACCAACAAAGCCCAGACAAGCAGACAAGCAGACAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAACCAACCAACAAAGCCCAGACAAGCAGACAAGCAGACAGATG  350

seq1  GATTAAATGGATGGAACTTAGTGGTAAAGGTCTTGTTTTGCTTGCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATGGATGGAACTTAGTGGTAAAGGTCTTGTTTTGCTTGCCTCTT  400

seq1  ATACATGAGGTCCTGAGTTTAATCTTCAGTACCTTTCATAGTAATAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAGGTCCTGAGTTTAATCTTCAGTACCTTTCATAGTAATAGTAA  450

seq1  TAATAACAATAAATTAATAAAACCTATAAAATGTGTGGTGGCACAAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAATAAATTAATAAAACCTATAAAATGTGTGGTGGCACAAGCCT  500

seq1  ATACTCTCAGCACTCAGGAAGCAGAAGCAGGAACATTGCTGAGAGTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCAGCACTCAGGAAGCAGAAGCAGGAACATTGCTGAGAGTTTGA  550

seq1  GGCCAACCTGAGCTACATAGTGAATTCTAGGCCAACCAGGGCTACACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTGAGCTACATAGTGAATTCTAGGCCAACCAGGGCTACACAGC  600

seq1  AAGACTCTCTCAAAGCACCAAGAATAAAATAAAAGAGACATGGAAAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCTCAAAGCACCAAGAATAAAATAAAAGAGACATGGAAAGTCC  650

seq1  CCGGAAGTGATCTTATTTTAAATAAAAGCTTTACCTGATGGGATTAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGTGATCTTATTTTAAATAAAAGCTTTACCTGATGGGATTAACAG  700

seq1  CATATTTAATTCCGTAGAAAAACGGTTTGAGAAGCAGCCCAGGGTGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAATTCCGTAGAAAAACGGTTTGAGAAGCAGCCCAGGGTGTGGT  750

seq1  CATGGAGTAGAAGGTAGAACAGATCCTTGGCCTGCCCATCATCCATCATC  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATGGAGTAGAAGGTAGAACAGATCCTTGGCCTGCCCATTATCCATCATC  800

seq1  TAACACTTGTGGATCAGAATCTCAGAGGGCAGAAGAGTCAGGACACGTGA  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAACACTTGTGGATCAGAATCTCAGA-GGCAGAAGAGTCAGGACACGTGA  849

seq1  TGCCAGCTACTCTGAAGTCTTGGTTTCAAGGCTATTTTAGGCCATAAAGC  900
      |||||||||||||||||| |||||||||||||||||||| ||||| ||| 
seq2  TGCCAGCTACTCTGAAGT-TTGGTTTCAAGGCTATTTTA-GCCAT-AAGT  896

seq1  CAGATCCTGTCTCAAAACTAAATACATCATTAAAGGTTAGGATTGGGGGC  950
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  CAGATCCTGTCTC-AAACT-AATACATCATTAAAGGTTAGGATTGGGGGC  944

seq1  CACTGAGGTGGCTGAGTGGCTGGAGGTGTTCGCTGCACAAACCTGACAAC  1000
      |||||| ||| ||||||||||||| ||||||  |||  ||||||||||| 
seq2  CACTGAAGTGTCTGAGTGGCTGGA-GTGTTCCTTGCCTAAACCTGACAA-  992

seq1  CTGA-GTTTGAGCCCTGGGATCTACACAAAAATGGAAGGAGAAAGCCAAC  1049
      |||| ||||||| ||||||||||  ||| ||||| |||   ||||   ||
seq2  CTGAGGTTTGAGTCCTGGGATCT--ACATAAATGTAAG--AAAAG--TAC  1036

seq1  CTCACCAAGCTGTCT-CCTCTCCACACTGTGGCAGGAACTCTCACATATA  1098
      ||||| ||||||||| ||||||    ||| ||||||| || |||| ||||
seq2  CTCACTAAGCTGTCTCCCTCTCATACCTGGGGCAGGATCT-TCACTTATA  1085

seq1  TATCTATC  1106
      ||||||||
seq2  TATCTATC  1093

seq1: chr2_119212082_119212691
seq2: B6Ng01-009P05.g_155_764 (reverse)

seq1  AGTTTATTTGTGTACTTATTTAAATTTGGAGCAATTCTGTTATTCTGTGC  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTTTATTTGTGTACTTATTTAAATTTGGAGCAATTATGTTATTCTGTGC  50

seq1  ACAATCTGGACCCTGGGTAATGATACACAAAAAAGCATCAATATTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTGGACCCTGGGTAATGATACACAAAAAAGCATCAATATTTAAAG  100

seq1  TAAAGAACTGCAGCTGGGCGATGGTGGTGCACGCCTTTAATCCCAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTGCAGCTGGGCGATGGTGGTGCACGCCTTTAATCCCAGCACT  150

seq1  CAGGAGGCAGAGACAGGAAGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAGAGACAGGAAGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC  200

seq1  AAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAGCCCTGTCTCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAGCCCTGTCTCGGA  250

seq1  AAACCAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA  300

seq1  TAAATAAATAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  350

seq1  AGATAGATAGATAATTGCATGTATGTCTGTGAGCACCCATGTAGGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAATTGCATGTATGTCTGTGAGCACCCATGTAGGTGCTG  400

seq1  TTAATCAAAACTGGGTCATCTGGAAGAGCAGTGCACCCTCTTAACCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAAACTGGGTCATCTGGAAGAGCAGTGCACCCTCTTAACCACTG  450

seq1  AGCCATCTTTCCAGTTCCTTGCTTTTGTTTTTATTTTTTGAAACAGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTTTCCAGTTCCTTGCTTTTGTTTTTATTTTTTGAAACAGGATA  500

seq1  TCACTATATGGGCCAGGCTAACCTGAGCTTACAGTGATCATTCTGTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATATGGGCCAGGCTAACCTGAGCTTACAGTGATCATTCTGTATCT  550

seq1  TCCTCATGAGTGCTTGGATTATGAGTGCATACTACTATGCTTTTAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGAGTGCTTGGATTATGAGTGCATACTACTATGCTTTTAAGTCT  600

seq1  ATGATTTAAA  610
      ||||||||||
seq2  ATGATTTAAA  610