BAC Information

Click to search

BAC

Clone NameB6Ng01-010B11
Chromosome2 (Build37)15 (Build37)
Map Location 175,790,058 - 175,790,40891,103,870 - 91,103,947
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126, LOC100039017
Downstream geneLOC100039036, LOC100039049, LOC626832, OTTMUSG00000016203, LOC100039060, LOC668030, LOC627914, LOC100039093, LOC668039, LOC100039109, LOC100043381, LOC100043387, LOC100039123, LOC626877, LOC100039156, LOC100039166, 6230416C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010B11.bB6Ng01-010B11.g
ACCDH845861DH845862
length843257
definitionDH845861|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B11, 5' end.DH845862|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(175,790,058 - 175,790,408)(91,103,870 - 91,103,947)
sequence
gaattctttcatgacttttgaagttgaccatgagaggcaaaaagtttact
acattgcttacattcataaggtttccttccaggatgaatcctttcatgtt
ttttaagtagctcatgagaggaaaaggattcactacattgcttacattca
tagggcttctctctagtatgtgttcttttatgtacacggagagtactacg
atatgcaaatgctttaccacattggttacatttataaggtttctctccag
tatgacttctttcatgaatttgaagttgatcatgagaggcaaaggattta
ctacattgcttacattcatagggtttcattccagtatgtgatcttttatg
tacttggagagtactatgatatgccaaggctttaccacattgatcacatt
tataaggtttctctccagtatgaactctctcatgtcttttaggatcattc
tgagctacaaaggctttaccacactgatcacattcatagggtttctctcc
agtatgtgttcttctatgtacttggagagtattatgaaatacaaaggctt
taccacattgattacatttatagggtttctctccagtatgtgttctttta
tgaattttgcagagtactgtgttgtgcaaaggctttaccatattgattgc
atttgtagggtttctctccagtatgtattattttggagactattttgatg
tacaaaggcttcaccagactgaattgccttcattagggtttttctccagt
ataaattctttcatgccttttaagataactatgacttgcaaagtctttac
cacactgaatattttcagagcgtttctctccataagtcttctt
caggacagccagggctacacagagaaaccctgactcgggagcggttgcgg
ggtggggcgggaagaaaaggcactaagtctaatgatctaaccttagtttg
attccttggacccagtgggggaaggagagaacagattcctgtgggctgtc
ctctgaccctcacattcattcattcattcattcattcattcattcattca
ttcttactctctctctcatacacatatatacagaaagagagagagagaga
gagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_175790058_175790408
seq2: B6Ng01-010B11.b_319_587

seq1  AGGCTTTACCACATTGCTTACATTCATAGGGTTTCTCTCCTGTATGTATT  50
      ||| ||||| |||||||||||||||||||||||||  ||| ||||||  |
seq2  AGGATTTACTACATTGCTTACATTCATAGGGTTTCATTCCAGTATGTGAT  50

seq1  CGTTTATGTATTTGGAGTTCACTCATTTTTGCAAAGGCTTTAACACAGTG  100
      | |||||||| ||||||   |||    | ||| ||||||||| |||| ||
seq2  CTTTTATGTACTTGGAGAGTACTATGATATGCCAAGGCTTTACCACATTG  100

seq1  GTTACATTCATATGGTTCGTCTCCTGTATGTTTTCGCTTATGGATTT--G  148
       | ||||| ||| ||||  ||||| |||||   || || |||  |||  |
seq2  ATCACATTTATAAGGTTTCTCTCCAGTATGAACTCTCTCATGTCTTTTAG  150

seq1  GAGAGTACTGCTTTCTGCAAAGGCTTTACCACAGTGGTTACATTCATAGG  198
      ||   | |||    || |||||||||||||||| || | |||||||||||
seq2  GATCATTCTG--AGCTACAAAGGCTTTACCACACTGATCACATTCATAGG  198

seq1  GTTTCTCTCCTGTATGTGTTCGTTTAAGTCTTTGGAGGACACTCCTTGTT  248
      |||||||||| |||||||||| | || ||  ||||||   | |      |
seq2  GTTTCTCTCCAGTATGTGTTCTTCTATGTACTTGGAGAGTATTATGAAAT  248

seq1  CCAAAGTCTTTACCACATTGGTTACACTCACAGTGTTTCTCTCCATTGTG  298
       ||||| |||||||||||||                              
seq2  ACAAAGGCTTTACCACATTGA-----------------------------  269

seq1  TATTCTTACATGCCTTTGACTATGACTGATATGCAAAGGCTTTACCACAT  348
                                                        
seq2  --------------------------------------------------  269

seq1  TGA  351
         
seq2  ---  269

seq1: chr15_91103870_91103947
seq2: B6Ng01-010B11.g_72_328 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CCCTCTCTCTCTCTCTCTCTCTTTCTGTATATATGTGTATGAGAGAGAGA  50

seq1  --------------------------------------------------  0
                                                        
seq2  GTAAGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGTGAGG  100

seq1  ----------------------------CCCTCCCTCTCTCTCTCTCTC-  21
                                  | |||| || | | ||   || 
seq2  GTCAGAGGACAGCCCACAGGAATCTGTTCTCTCCTTCCCCCACTGGGTCC  150

seq1  -----------------TT---TCTTTCGTTTTTGT---TTTT-------  41
                       ||   || || |  || ||   ||||       
seq2  AAGGAATCAAACTAAGGTTAGATCATTAGACTTAGTGCCTTTTCTTCCCG  200

seq1  --------------------CGAGACAGGGTTTCTCTGTATAGCCCTGGC  71
                          |||| |||||||||||||| ||||||||||
seq2  CCCCACCCCGCAACCGCTCCCGAGTCAGGGTTTCTCTGTGTAGCCCTGGC  250

seq1  TGTCCTG  78
      |||||||
seq2  TGTCCTG  257