BAC Information

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BAC

Clone NameB6Ng01-013A20
Chromosome2 (Build37)
Map Location 137,649,671 - 137,650,774
singlet/doubletsinglet
Overlap genenone
Upstream geneMkks, 2210009G21Rik, Jag1
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013A20.bB6Ng01-013A20.g
ACCDH847971DH847972
length1,100638
definitionDH847971|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A20, 5' end.DH847972|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctcatgataaagttgtcccccttcttgcctctgactttattc
agtgatctctttcttttcctctatatcccttttttcccctctcctaacta
gtgttagaggattgaaaggatggaactaaaacggtggagatgggtggaag
aaagaagaatccagaaagtagccaagagcagctacagacaactcttttgt
gtgcccccaaaatattccccagatcctggacagcaaaacaggcatctgtc
cccaggccctgtaaccagatctcaactgctgcttcgagttcaggactagc
aaggtcaagctcaaatctcctcctaccttctgctgccaatgatcagagga
ttatagcccttccacaaccattatcaaaggacaccattcacaaagggtga
ggagagctccttccagttcaaagcttcagtccctagctgctagacaagcc
tgtccacactctgaatagagggaggtaccactatctgagaccttggcaac
tatcaaatttagaaaagttgacaagttcaaaaccaagcaagtctataacc
tcataaacagtgggaaacgcccagttattttaatgcacattcaagatttt
agaacctgaaattgtgatttctattgactactgcttttcttttattgttt
attgatggaagttctcaaatgcaaatgaaagcagatggggagggggggaa
actcacagagctcccacttcagtcccacacattttaacattgtctcatcc
cttttccccaagtgggagagacttagaaacttagacatttgcagtatttt
ttgtagccttctccagttcaaaatgtgttgctgagataaagacttgctcc
ttcccagccagaacatcaccacacttagcccaacatgtgctttctttgtg
tagcttatgcttcagtacactgttaaattttctacattgttcacagaata
tttcagtggctccttggctcattccatggcagatcagtccagatgcaatc
ctggattaggatgcggagaaggcagtcttctgttaactgagaggaatgct
acaggtgttatacagtcctgaagaactgggggagaaagggttgggtggtt


gaattctccatttagttctattgtccaacagtagggagagggaatgtata
gagcccacctccagcatgaagacaggacatcaaatgaaggaggaggccac
catttcacagtaacaactctgactcataattgttcctgtctaaagaatta
cagggatggaaatggagaggagcctgaggaaaataaggtccagctacagg
cccaaagtggaatccagctcaaggagaggtcccaaggcctgacactatta
ctgaggctatggggcactcacaaaaagggacctagcatgaccgcactctg
gaagactcatcaagcagctgaaagagtcagatacagatatttgcactcaa
tggacagaagcagctgaaccctgttgttgaattagggaagactgaaagaa
gctgaggagaagggagattctgtaggagcaccagcagtctcaattaaact
gggcccccaagatctctcaaacactggaccaccaaacaggcagcatacac
cagctgatatgaggtcctcaagacacatacagtagaggactttcaggtct
gtgtccattcagagatgatgcacctaaccctcaagagactggaggcctca
gagagtttagaggtcaggtgggttgggggtggggatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_137649671_137650774
seq2: B6Ng01-013A20.b_43_1141 (reverse)

seq1  ACCACCCA--CCCTTCT-CCCCAGTCTTCCAGGACTGGTATAACACTTGT  47
      ||||||||  || |||| |||||||  | ||||||| ||||||||| |||
seq2  ACCACCCAACCCTTTCTCCCCCAGTTCTTCAGGACT-GTATAACACCTGT  49

seq1  AGCCATTTCCCTCTCAGTGTAACAGAAGGACTGCTTTCTCCGGCATCCTA  97
      || ||||  ||||||||| |||||||| |||||| |||||| ||||||||
seq2  AG-CATT--CCTCTCAGT-TAACAGAA-GACTGCCTTCTCC-GCATCCTA  93

seq1  ATCCAGGAATTGCATCTGGACTGAATCTGCCATGGAATGAGCCAAGGAGC  147
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCCAGG-ATTGCATCTGGACTG-ATCTGCCATGGAATGAGCCAAGGAGC  141

seq1  CACTTGAAATA-TCTGTGAACAATTGTAG-AAATTTTACAGTGTACTGAA  195
      ||| ||||||| ||||||||||| ||||| |||||| |||||||||||||
seq2  CAC-TGAAATATTCTGTGAACAA-TGTAGAAAATTTAACAGTGTACTGAA  189

seq1  GCATAAGCTTACACAAAGAAAGCACATGTTGGGCTAAGTGTGGTGATGTT  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGC-TACACAAAGAAAGCACATGTTGGGCTAAGTGTGGTGATGTT  238

seq1  CTGGCTGGGGAGGAGCAAGTCTTTATCTCAGCAACACATTTTGAACTGGA  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGGAAGGAGCAAGTCTTTATCTCAGCAACACATTTTGAACTGGA  288

seq1  GAAGGCTACAAAAAATACTGC-AATGTCTAAGTTTCTAAGTCTCTCCCAC  344
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGGCTACAAAAAATACTGCAAATGTCTAAGTTTCTAAGTCTCTCCCAC  338

seq1  TTGGGGAAAAGGGATGAGACAATGTTAAAATGTGTGGGACTGAAGTGGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAAAGGGATGAGACAATGTTAAAATGTGTGGGACTGAAGTGGGA  388

seq1  GCTCTGTGAGTTT-CCCCCCTCCCCATCTGCTTTCATTTGCATTTGAGAA  443
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGAGTTTCCCCCCCTCCCCATCTGCTTTCATTTGCATTTGAGAA  438

seq1  CTTCCATCAATAAACAATAAAAGAAAAGCAGTAGTCAATAGAAATCACAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCAATAAACAATAAAAGAAAAGCAGTAGTCAATAGAAATCACAA  488

seq1  TTTCAGGTTCTAAAATCTTGAATGTGCATTAAAATAACTGGGCGTTTCCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTTCTAAAATCTTGAATGTGCATTAAAATAACTGGGCGTTTCCC  538

seq1  ACTGTTTATGAGGTTATAGACTTGCTTGGTTTTGAACTTGTCAACTTTTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTATGAGGTTATAGACTTGCTTGGTTTTGAACTTGTCAACTTTTC  588

seq1  TAAATTTGATAGTTGCCAAGGTCTCAGATAGTGGTACCTCCCTCTATTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGATAGTTGCCAAGGTCTCAGATAGTGGTACCTCCCTCTATTCA  638

seq1  GAGTGTGGACAGGCTTGTCTAGCAGCTAGGGACTGAAGCTTTGAACTGGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGACAGGCTTGTCTAGCAGCTAGGGACTGAAGCTTTGAACTGGA  688

seq1  AGGAGCTCTCCTCACCCTTTGTGAATGGTGTCCTTTGATAATGGTTGTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCTCCTCACCCTTTGTGAATGGTGTCCTTTGATAATGGTTGTGG  738

seq1  AAGGGCTATAATCCTCTGATCATTGGCAGCAGAAGGTAGGAGGAGATTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTATAATCCTCTGATCATTGGCAGCAGAAGGTAGGAGGAGATTTG  788

seq1  AGCTTGACCTTGCTAGTCCTGAACTCGAAGCAGCAGTTGAGATCTGGTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGACCTTGCTAGTCCTGAACTCGAAGCAGCAGTTGAGATCTGGTTA  838

seq1  CAGGGCCTGGGGACAGATGCCTGTTTTGCTGTCCAGGATCTGGGGAATAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTGGGGACAGATGCCTGTTTTGCTGTCCAGGATCTGGGGAATAT  888

seq1  TTTGGGGGCACACAAAAGAGTTGTCTGTAGCTGCTCTTGGCTACTTTCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGCACACAAAAGAGTTGTCTGTAGCTGCTCTTGGCTACTTTCTG  938

seq1  GATTCTTCTTTCTTCCACCCATCTCCACCGTTTTAGTTCCATCCTTTCAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCTTTCTTCCACCCATCTCCACCGTTTTAGTTCCATCCTTTCAA  988

seq1  TCCTCTAACACTAGTTAGGAGAGGGGAAAAAAGGGATATAGAGGAAAAGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAACACTAGTTAGGAGAGGGGAAAAAAGGGATATAGAGGAAAAGA  1038

seq1  AAGAGATCACTGAATAAAGTCAGAGGCAAGAAGGGGGACAACTTTATCAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATCACTGAATAAAGTCAGAGGCAAGAAGGGGGACAACTTTATCAT  1088

seq1  GAGATGAATTC  1104
      |||||||||||
seq2  GAGATGAATTC  1099


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