BAC Information

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BAC

Clone NameB6Ng01-013B24
Chromosome2 (Build37)
Map Location 130,013,627 - 130,160,819
singlet/doubletdoublet
Overlap geneTmc2, Nol5a, Idh3b, Ebf4
Upstream geneLOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb
Downstream geneLOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013B24.bB6Ng01-013B24.g
ACCDH848022DH848023
length919403
definitionDH848022|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B24, 5' end.DH848023|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,159,912 - 130,160,819)(130,013,627 - 130,014,007)
sequence
gaattcaggctaaggattcctccagtcaatgacagtaaacaattgctggg
gcataggactctttttactatcatccacacacacacacacacacatacac
acacacacacatgtatatacacatgaatataaaggggagcagaggaggca
gacacaagtatgccagtacttgggaagctgaagcaggaagatcatgagtt
caaggctagcctatgctacatagtaagaccttatctcaaaaataaaaaag
gacaaaagggccacagaaaaactacagttgtatacatacaacaatgagaa
tcccttaagaaggtgaaaggtcaaaaaaatacttgaacaaataatgataa
aacaagacaaaaccaaaaccattctctaaatatagccagacatgacagtg
catgcctttaatcccagcacttaggagacagagacagctagagctctgtg
agttccacaccagctgatctacattgtgagttacaggctttttcagactg
catagtgaggccttgtcttaaaaacaaacaaacaaacaaacaaacaaccc
ccaaaacaaacaaaaaaaaaaaaccaaaataaaaagacccaacttttcta
atacatgtaaaactttttaaactgagatgcaaaaagattaccacaaaccc
acgcataaagaacataaaaagccccatcacttgtacgctgtaatcgggct
gctcacatgaatggtaaaaatcctaaagcagctgaaattaaagttatgga
tagatattactggggatgaagataagtgttttatcagatttttcatccaa
aattgtgagagaggacactggggtgtgttttcagaatagtcttagtggtg
tgtaagaggccctgggtttagttttgaccacccaaaccaaaaagaaaagc
aacctcaaagttccagctg
cggaattgatgtgggttgtctctgtcccctgtgtgggcagaaatagcaag
taagcatcgtgggctttttctctccctgtctcctagaacagtgagggaag
gaatgagcagacaaaagaaccaaaccccacaaaaaacaaaaacacatgac
cctggggctggagcgatattccagcagtttggagcgttagctgcttatcc
caaggactcaggttcaattcccagcacccatatggcagctaacaactgtc
tgtaactctagtcctgggggtatctgggcgctttctgatctctaaggtgt
acagcattacatgcagacaaacacctatacacaaaaagtaaaaaataaac
caaagaccaacaagatttttttttttggcacctggccccaagtctcattt
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130159912_130160819
seq2: B6Ng01-013B24.b_44_962 (reverse)

seq1  CAGCTGGACTTTTGTGGTTGCTTTTC-TTTTGGTTTGGGTGATCATAACT  49
      ||||||||  |||| ||||||||||| |||||||||||||| ||| ||||
seq2  CAGCTGGAACTTTGAGGTTGCTTTTCTTTTTGGTTTGGGTGGTCAAAACT  50

seq1  AAACCCAGGGCCTCTTACACA-CACTAAGACTCTTCTGAA---ACACCCC  95
      ||||||||||||||||||||| |||||||||| |||||||   |||||||
seq2  AAACCCAGGGCCTCTTACACACCACTAAGACTATTCTGAAAACACACCCC  100

seq1  AGTGTCCTCTCTCAC-ATTTCTGATGAAAAATCTGATAAAACACTTATCT  144
      ||||||||||||||| ||||  ||||||||||||||||||||||||||||
seq2  AGTGTCCTCTCTCACAATTTTGGATGAAAAATCTGATAAAACACTTATCT  150

seq1  TCAT-CCCAGTAATATCTAT-CATAACTTTTATTTTCAGCTGCTTTAGGA  192
      |||| ||||||||||||||| |||||| |||| |||||||||||||||||
seq2  TCATCCCCAGTAATATCTATCCATAAC-TTTAATTTCAGCTGCTTTAGGA  199

seq1  TTTTTACCATTCATGTTGAGCAGCCCGATTACAGCGTAC-AGTGATGGGG  241
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TTTTTACCATTCATG-TGAGCAGCCCGATTACAGCGTACAAGTGATGGGG  248

seq1  CTTTTTATGTTCCTTATGCGT-GGATTGTGCTAATCTTTTTGCATCTCAG  290
      |||||||||||| |||||||| || ||||| |||||||||||||||||||
seq2  CTTTTTATGTTCTTTATGCGTGGGTTTGTGGTAATCTTTTTGCATCTCAG  298

seq1  TTTAAAA--GTTTACATGTATTTAGAAAGTTGGGTCTTTTTATTTTGGTT  338
      |||||||   ||||||||||||   |||||||||||||||||||||||||
seq2  TTTAAAAAGTTTTACATGTATTAGAAAAGTTGGGTCTTTTTATTTTGGTT  348

seq1  TTTTTTTTTTGTTTGTTTTGGGGGTTGTTTGTTTGTTTGTTTGTTTGTTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTTTGTTTTGGGGGTTGTTTGTTTGTTTGTTTGTTTGTTT  398

seq1  TTAAGACAAGGCCTCACTATGCAGTCTG-GATGGCCTGTAACTCACAATG  437
      ||||||||||||||||||||||||||||  |  |||||||||||||||||
seq2  TTAAGACAAGGCCTCACTATGCAGTCTGAAAAAGCCTGTAACTCACAATG  448

seq1  TAGATCAGCTGGTGTGGAACTCACAGAGCTCTAGCTGTCTCTGTCTCCTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGCTGGTGTGGAACTCACAGAGCTCTAGCTGTCTCTGTCTCCTA  498

seq1  AGTGCTGGGATTAAAGGCATGCACTGTCATGTCTGGCTATATTTAGAGAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGCATGCACTGTCATGTCTGGCTATATTTAGAGAA  548

seq1  TGGTTTTGGTTTTGTCTTGTTTTATCATTATTTGTTCAAGTATTTTTTTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGGTTTTGTCTTGTTTTATCATTATTTGTTCAAGTATTTTTTTG  598

seq1  ACCTTTCACCTTCTTAAGGGATTCTCATTGTTGTATGTATACAACTGTAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCACCTTCTTAAGGGATTCTCATTGTTGTATGTATACAACTGTAG  648

seq1  TTTTTCTGTGGCCCTTTTGTCCTTTTTTATTTTTGAGATAAGGTCTTACT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTGGCCCTTTTGTCCTTTTTTATTTTTGAGATAAGGTCTTACT  698

seq1  ATGTAGCATAGGCTAGCCTTGAACTCATGATCTTCCTGCTTCAGCTTCCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCATAGGCTAGCCTTGAACTCATGATCTTCCTGCTTCAGCTTCCC  748

seq1  AAGTACTGGCATACTTGTGTCTGCCTCCTCTGCTCCCCTTTATATTCATG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTGGCATACTTGTGTCTGCCTCCTCTGCTCCCCTTTATATTCATG  798

seq1  TGTATATACATGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TGTATATACATGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGGATG  848

seq1  ATAGTAAAAAGAGTCCTATGCCCCAGCAATTGTTTATTGACATTGACTGG  887
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  ATAGTAAAAAGAGTCCTATGCCCCAGCAATTGTTTACTGTCATTGACTGG  898

seq1  AGGAATCCTTAGCCTGAATTC  908
      |||||||||||||||||||||
seq2  AGGAATCCTTAGCCTGAATTC  919

seq1: chr2_130013627_130014007
seq2: B6Ng01-013B24.g_83_466

seq1  TTGTCTCTGTCCCCTGTGTGGGCAGAAATAGCATAGTCTCTGAATCGTGG  50
      ||||||||||||||||||||||||||||||||| ||  |  | |||||||
seq2  TTGTCTCTGTCCCCTGTGTGGGCAGAAATAGCA-AG--TAAGCATCGTGG  47

seq1  GCTTTTTCTCTCCCTGTCTCCTAGAACAGTGAGGGAAGGAATGAGCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCTCTCCCTGTCTCCTAGAACAGTGAGGGAAGGAATGAGCAGAC  97

seq1  AAAAGAACCAAA-ATGACAAAAAACAAAAACACATGACCCTGGGGCTGGA  149
      ||||||||||||    ||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCAAACCCCACAAAAAACAAAAACACATGACCCTGGGGCTGGA  147

seq1  GCGATATTCCAGCAGTTTGGAGCGTTAGCTGCTTATCCCAAGGACTCAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATATTCCAGCAGTTTGGAGCGTTAGCTGCTTATCCCAAGGACTCAGG  197

seq1  TTCAATTCCCAGCACCCATATGGCAGCTAACAACTGTCTGTAACTCTAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCCAGCACCCATATGGCAGCTAACAACTGTCTGTAACTCTAGT  247

seq1  CCT-GGGGTATCT-GGTGCTTTCTGATCTCTAAGGTGTACAGCATTACAT  297
      ||| ||||||||| || |||||||||||||||||||||||||||||||||
seq2  CCTGGGGGTATCTGGGCGCTTTCTGATCTCTAAGGTGTACAGCATTACAT  297

seq1  GCAGACAAACACCTATACACAAAAAGT-AAAAATAAACAAAAGACCAACA  346
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  GCAGACAAACACCTATACACAAAAAGTAAAAAATAAACCAAAGACCAACA  347

seq1  AGA--TCCATGGTTGGCACCTGGCCACAAGTTTCATT  381
      |||  |   |  ||||||||||||| ||||| |||||
seq2  AGATTTTTTTTTTTGGCACCTGGCCCCAAGTCTCATT  384