BAC Information

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BAC

Clone NameB6Ng01-013C09
Chromosome2 (Build37)
Map Location 72,586,166 - 72,765,045
singlet/doubletdoublet
Overlap gene6430710C18Rik
Upstream geneItga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013C09.bB6Ng01-013C09.g
ACCDH848040DH848041
length1,075151
definitionDH848040|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C09, 5' end.DH848041|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,586,166 - 72,587,242)(72,764,895 - 72,765,045)
sequence
gaattccactgaatgcctttggctctccctaccttgtaaacacagaagct
gggaaagtaagtcaaccagctcaactttcccaagtaacctttacaagcca
gcagccagggcaactgtgtgctccctggcactgaggtgagacatatccct
gctctcagcttccctgggctaagtgatccaagcatctaaacacacctttg
tccattgagtcaactgagtgccctggaccatgagcccagtcctgtttggc
cccaaagtagccagagaaccagcctctatgaacaagctttaatagcataa
gcatgatttcacattatcccagggcagtcctgtggtgcattttcttatgg
acagggacattcctgggttagctccttgggtcagtgtcagttacaacagc
taccttgctatatcctttctggctgtttttactatcagagacctctttag
ataaatcacatctaaactctgtgtggactatggtggagggagacacccat
cttggagggagccaaggtctatagatcctgtgccctgagttttacccatt
cctgagagagcacacagacattgctctccttctggctggcccttccaaag
cacagtaaaaacaactcaaagtaagggcgtttcatataattttaagaact
caatgagaacaaagtcaaagaattctgacttcctggaatcttggtgtgaa
ccctgctgcccctctgcctatattgaggaagtgtcttcacccccgattct
cgtcttatgaggatgaagttggggcaggacattgagatgcacagtgatac
tatttttactttaatgaccaattttctgcctcaatttcccctactcttcc
tgacccgagttgcctctgcttcttttctggcttcttggggctggagagat
ggctcaatggttaggagcactggatgcctcttccagaggtccccaagttc
aattcccagcaaccacatggtggcccacaccattctatactgagatcctg
tgccctctttggggggcaggcatacatccggcagaatactgtataagtaa
taatgaaataaaaatattttaaaaa
cagaaattcccttgccgtgcaaaaggtgctaagggctagacagggactgc
tgaaaccagatcagggtccataggtggattcctgataagtgggagatgct
gctgctgataaagaactggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72586166_72587242
seq2: B6Ng01-013C09.b_45_1119

seq1  GAATTCCACTGAATGCCTTTGGCTCTCCCTACCTTGTAAACACAGAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGAATGCCTTTGGCTCTCCCTACCTTGTAAACACAGAAGCT  50

seq1  GGGAAAGTAAGTCAACCAGCTCAACTTTCCCAAGTAACCTTTACAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTAAGTCAACCAGCTCAACTTTCCCAAGTAACCTTTACAAGCCA  100

seq1  GCAGCCAGGGCAACTGTGTGCTCCCTGGCACTGAGGTGAGACATATCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGGGCAACTGTGTGCTCCCTGGCACTGAGGTGAGACATATCCCT  150

seq1  GCTCTCAGCTTCCCTGGGCTAAGTGATCCAAGCATCTAAACACACCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGCTTCCCTGGGCTAAGTGATCCAAGCATCTAAACACACCTTTG  200

seq1  TCCATTGAGTCAACTGAGTGCCCTGGACCATGAGCCCAGTCCTGTTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGAGTCAACTGAGTGCCCTGGACCATGAGCCCAGTCCTGTTTGGC  250

seq1  CCCAAAGTAGCCAGAGAACCAGCCTCTATGAACAAGCTTTAATAGCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTAGCCAGAGAACCAGCCTCTATGAACAAGCTTTAATAGCATAA  300

seq1  GCATGATTTCACATTATCCCAGGGCAGTCCTGTGGTGCATTTTCTTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATTTCACATTATCCCAGGGCAGTCCTGTGGTGCATTTTCTTATGG  350

seq1  ACAGGGACATTCCTGGGTTAGCTCCTTGGGTCAGTGTCAGTTACAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACATTCCTGGGTTAGCTCCTTGGGTCAGTGTCAGTTACAACAGC  400

seq1  TACCTTGCTATATCCTTTCTGGCTGTTTTTACTATCAGAGACCTCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCTATATCCTTTCTGGCTGTTTTTACTATCAGAGACCTCTTTAG  450

seq1  ATAAATCACATCTAAACTCTGTGTGGACTATGGTGGAGGGAGACACCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCACATCTAAACTCTGTGTGGACTATGGTGGAGGGAGACACCCAT  500

seq1  CTTGGAGGGAGCCAAGGTCTATAGATCCTGTGCCCTGAGTTTTACCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGGAGCCAAGGTCTATAGATCCTGTGCCCTGAGTTTTACCCATT  550

seq1  CCTGAGAGAGCACACAGACATTGCTCTCCTTCTGGCTGGCCCTTCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGAGCACACAGACATTGCTCTCCTTCTGGCTGGCCCTTCCAAAG  600

seq1  CACAGTAAAAACAACTCAAAGTAAGGGCGTTTCATATAATTTTAAGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAAAACAACTCAAAGTAAGGGCGTTTCATATAATTTTAAGAACT  650

seq1  CAATGAGAACAAAGTCAAAGAATTCTGACTTCCTGGAATCTTGGTGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGAACAAAGTCAAAGAATTCTGACTTCCTGGAATCTTGGTGTGAA  700

seq1  CCCTGCTGCCCCTCTGCCTATATTGAGGAAGTGTCTTCACCCCCGATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGCCCCTCTGCCTATATTGAGGAAGTGTCTTCACCCCCGATTCT  750

seq1  CGTCTTATGAGGATGAAGTTGGGGCAGGACATTGAGATGCACAGTGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTATGAGGATGAAGTTGGGGCAGGACATTGAGATGCACAGTGATAC  800

seq1  TATTTTTACTTTAATGACCAATTTTCTGCCTCAATTTCCCCTACTCTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACTTTAATGACCAATTTTCTGCCTCAATTTCCCCTACTCTTCC  850

seq1  TGACCCGAGTTGCCTCTGCTTCTTTTCTGGCTTCTTGGGGCTGGAGAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCGAGTTGCCTCTGCTTCTTTTCTGGCTTCTTGGGGCTGGAGAGAT  900

seq1  GGCTCAATGGTTAGGAGCACTGGATG-CTCTTCCAGAGGTCCTCAAGTTC  949
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  GGCTCAATGGTTAGGAGCACTGGATGCCTCTTCCAGAGGTCCCCAAGTTC  950

seq1  AATTCCCAGCAACCACATGGTGGCTCACAACCATTCTATACTGAGATCCT  999
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  AATTCCCAGCAACCACATGGTGGCCCAC-ACCATTCTATACTGAGATCCT  999

seq1  GTGCCCTCTTTTGGTGTGCAGGCATACATACAGGCAGAATACTGTATAAG  1049
      |||||||| ||||| | |||||||||||| | ||||||||||||||||||
seq2  GTGCCCTC-TTTGGGGGGCAGGCATACAT-CCGGCAGAATACTGTATAAG  1047

seq1  TAATAAGTAAATAAAAATATTTTAAAAA  1077
      ||||||  ||||||||||||||||||||
seq2  TAATAATGAAATAAAAATATTTTAAAAA  1075

seq1: chr2_72764895_72765045
seq2: B6Ng01-013C09.g_70_220 (reverse)

seq1  CACACACACACACACACACACACACACACACACCAGTTCTTTATCAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACCAGTTCTTTATCAGCAG  50

seq1  CAGCATCTCCCACTTATCAGGAATCCACCTATGGACCCTGATCTGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTCCCACTTATCAGGAATCCACCTATGGACCCTGATCTGGTTTC  100

seq1  AGCAGTCCCTGTCTAGCCCTTAGCACCTTTTGCACGGCAAGGGAATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCCCTGTCTAGCCCTTAGCACCTTTTGCACGGCAAGGGAATTTCT  150

seq1  G  151
      |
seq2  G  151