BAC Information

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BAC

Clone NameB6Ng01-013N13
Chromosome2 (Build37)
Map Location 47,516,757 - 47,517,846
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N13.bB6Ng01-013N13.g
ACCDH848557DH848558
length1,1361,077
definitionDH848557|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N13, 5' end.DH848558|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgaaccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtctttcgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctctcttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagacttttttgctatcctaggttttttgttattccagac
aaatttgcaaattgctccttccaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
ttctgagatcttccttaatttctttcttcagagatttgagtttttatcaa
aacagatctttcacttccttagttagagtcacgccaagatattttatatt
attgtgactattgagagggttgtttccctaattctttctcagctgtttat
tcttttgtgtagagaaggccattgactgttgagttatttttattccagct
acttcaccgagctgttatatctgggtaaggagttccctggtaatattcca
gtccggtgaatctaccattgctacactgagatccat
gaattcaattcaatccgtgtgaagtctagacaaagcttgtcagggtgaat
tggtttctctttttcctttatttcctgttgtatgtttcagagattcatga
aagacaacgctgtctgttccatcaggactgaggtgacaacaattcttaca
tcattctaaagagagggaactggagctgcacaacagtgcttggctctgtg
agatactaaaaattaggtaagaaaatgttcaggttccctgactgtaacag
aacatggtagtcaagatggatattgctgtttttcatggttattaccccat
tcctctgctctgaaatctgtctgtgacacttccaacattgatagttttct
gccatagactattaaaaacttctgaacccatttttttgataataataagt
cctgatactagagaccttttcataatttgagtaaaattattcatttcaag
tttaggctgatcacaattttatatttacaaatttctccaaataattgtgg
attgtgttatcatataactatttttaagtcataatgttatttaaaattac
tgtaattaatctatagttaagttctccaggcacacactcaggaaccagaa
aagctcatttttaatatttgagtttattatacacattatgtgttatttta
tatctttaaacaatagattgtgtagatgtaatctcaagagatcattttcc
tcagttctcatctcttatatagttaattttcatgactagaaatactaaag
ataagaaaaaactttattttcccacccataaatttctgtaccctctgtat
tccctcaaaattctctttgcaagctggccaatctttatttaaacatttct
ttcgtcttatacctatatgcatctaggaccaaccgcctggcatttcaaat
tcttcataggactcttaagccaaaatgaaaggtcattgtaaagattggct
ttcattattatgttgcagcatcatgttactattattttactctaaaccct
caatattcacattttttctacctcaatacattgctgattttctctagcat
tgggaaagattttgttggcaatttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_47516757_47517846
seq2: B6Ng01-013N13.g_67_1143 (reverse)

seq1  GAGAAATGGCAAACAAAATCTTCACAAATGCTAGGAGAAAATACAGCAAA  50
      ||||||| || |||||||||||  | ||||||| |||||||| |||||| 
seq2  GAGAAATTGCCAACAAAATCTTTCCCAATGCTA-GAGAAAAT-CAGCAA-  47

seq1  TTGTTATTGGAGGTTAGAAAAATGGTG-ATA-TGAGTGTTTTAGAGTAAA  98
       || |||| |||| ||||||||  ||| ||| |||| | |||||||||||
seq2  -TG-TATT-GAGG-TAGAAAAAATGTGAATATTGAG-GGTTTAGAGTAAA  92

seq1  ATAATTAGTAAACATGATGCCTGCAACAATAATAATGAAAGCCAATCTTT  148
      |||| |||| ||||||||| ||||||| ||||||||||||||||||||||
seq2  ATAA-TAGT-AACATGATG-CTGCAAC-ATAATAATGAAAGCCAATCTTT  138

seq1  ACAATGACCTTTTCATTTTGGCTTAAGAGTCCTATGAAGAATTTTGAAAT  198
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  ACAATGACC-TTTCATTTTGGCTTAAGAGTCCTATGAAGAA-TTTGAAAT  186

seq1  GCCAGGCGGTTGGTCCTAGATGCATATAGGTATAAGACGAAAGAAATGTT  248
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCAGGCGGTTGGTCCTAGATGCATATAGGTATAAGACGAAAGAAATG-T  235

seq1  TTAAATAAAGATTGGCCAGCTTGCAAAGAGAATTTTGAGGGAATACAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAGATTGGCCAGCTTGCAAAGAGAATTTTGAGGGAATACAGAG  285

seq1  GGTACAGAAATTTATGGGTGGGAAAATAAAGTTTTTTCTTATCTTTAGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGAAATTTATGGGTGGGAAAATAAAGTTTTTTCTTATCTTTAGTA  335

seq1  TTTCTAGTCATGAAAATTAACTATATAAGAGATGAGAACTGAGGAAAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTCATGAAAATTAACTATATAAGAGATGAGAACTGAGGAAAATG  385

seq1  ATCTCTTGAGATTACATCTACACAATCTATTGTTTAAAGATATAAAATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGAGATTACATCTACACAATCTATTGTTTAAAGATATAAAATAA  435

seq1  CACATAATGTGTATAATAAACTCAAATATTAAAAATGAGCTTTTCTGGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAATGTGTATAATAAACTCAAATATTAAAAATGAGCTTTTCTGGTT  485

seq1  CCTGAGTGTGTGCCTGGAGAACTTAACTATAGATTAATTACAGTAATTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGTGTGCCTGGAGAACTTAACTATAGATTAATTACAGTAATTTT  535

seq1  AAATAACATTATGACTTAAAAATAGTTATATGATAACACAATCCACAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACATTATGACTTAAAAATAGTTATATGATAACACAATCCACAATT  585

seq1  ATTTGGAGAAATTTGTAAATATAAAATTGTGATCAGCCTAAACTTGAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGAAATTTGTAAATATAAAATTGTGATCAGCCTAAACTTGAAAT  635

seq1  GAATAATTTTACTCAAATTATGAAAAGGTCTCTAGTATCAGGACTTATTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTTACTCAAATTATGAAAAGGTCTCTAGTATCAGGACTTATTA  685

seq1  TTATCAAAAAAATGGGTTCAGAAGTTTTTAATAGTCTATGGCAGAAAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAAAAATGGGTTCAGAAGTTTTTAATAGTCTATGGCAGAAAACT  735

seq1  ATCAATGTTGGAAGTGTCACAGACAGATTTCAGAGCAGAGGAATGGGGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGTTGGAAGTGTCACAGACAGATTTCAGAGCAGAGGAATGGGGTA  785

seq1  ATAACCATGAAAAACAGCAATATCCATCTTGACTACCATGTTCTGTTACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATGAAAAACAGCAATATCCATCTTGACTACCATGTTCTGTTACA  835

seq1  GTCAGGGAACCTGAACATTTTCTTACCTAATTTTTAGTATCTCACAGAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGAACCTGAACATTTTCTTACCTAATTTTTAGTATCTCACAGAGC  885

seq1  CAAGCACTGTTGTGCAGCTCCAGTTCCCTCTCTTTAGAATGATGTAAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTGTTGTGCAGCTCCAGTTCCCTCTCTTTAGAATGATGTAAGAA  935

seq1  TTGTTGTCACCTCAGTCCTGATGGAACAGACAGCGTTGTCTTTCATGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCACCTCAGTCCTGATGGAACAGACAGCGTTGTCTTTCATGAAT  985

seq1  CTCTGAAACATACAACAGGAAATAAAGGAAAAAGAGAAACCAATTCACCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAACATACAACAGGAAATAAAGGAAAAAGAGAAACCAATTCACCC  1035

seq1  TGACAAGCTTTGTCTAGACTTCACACGGATTGAATTGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCTTTGTCTAGACTTCACACGGATTGAATTGAATTC  1077