BAC Information

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BAC

Clone NameB6Ng01-014M10
Chromosome2 (Build37)
Map Location 49,115,954 - 49,263,668
singlet/doubletdoublet
Overlap geneMbd5, LOC100042719, LOC666709, LOC435666
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
Downstream geneEpc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014M10.bB6Ng01-014M10.g
ACCDH849223DH849224
length1,199928
definitionDH849223|Mus musculus domesticus DNA, BAC clone: B6Ng01-014M10, 5' end.DH849224|Mus musculus domesticus DNA, BAC clone: B6Ng01-014M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,115,954 - 49,117,159)(49,262,742 - 49,263,668)
sequence
gaattcttttggtaaggtaaattctaaaaaagattcttaccccataattt
tttatgttatgaagtgaattatgtcaactgaatgtactatcataattgcc
tggcataaatacctgtttacactgctatttgttctttcattaatactcat
tgaacagtgatgttgggcatttagaatgaagcaacagaggacagtccaac
tttctttgtaagagtagagaaatgcaacttttggtctttttctattgttt
tgagataaggtacatagctcatgctaaactcaaactcatgatcttcctga
cctgaccttctgagtgctgggattgaaagcatgtgctaccatattttatt
tgtaaaatgctgcaaatagctatcatggaatagctattttgtgccaagta
ctccactcgttattcatggcctgtatagatacccatagtataaaatgttg
tcttcatttaacagatgagaaacttgaacctcagacaacctcactaacca
aaatcttctaacttaaccaggattagaactcaggtttctctgatcctgaa
ataatcaccttctcagctacgtaagttcatctgaaatgtttagtctccag
aattactgatttccttttcaaatagcacattgtcatgtgacaatccacag
gtgtaaatttttaatatgttttagataaaagccagttctttctgccttct
ttctttggagtctggtatcatagcacacatgattagaatatttctgtagg
tgcagatgatctgttcagaatatcaagagaattccctgaatatgtgaact
gtatttggtgacctttataactgacacaggatcgggtccctgagagctat
gtatgcttctgtagacctgaagcaggacgatgtcagctctttgagtcttg
catggcatgatggtacagtggcagactgacaggaagcatggtccaactct
accctcccagcaaagcctacacaggtgactcagtgccttgcccagtcttt
tatgtgtaaatcagaaatacaacacaaagcataagaatgactgcctcttg
tggcttaatcaattagtattctattcaaaatactttttttaataccacat
gtgtttcagcatggggaggcaggcattgtgcccacgcacacaatgtggca
ctcaaggcacctcttgtggagtcactccactttccacacttcagggggt
gaattcaaggccagcctggtctacagcttgagttccaggaaagctagggc
tacacagagaaaccctgtcaaaaaaaaaaaaaaaaaaaaaaaaaggaagg
aaagaaggaagaaaggaaggaaggaaactgaacaaaaatcaatgcatatg
attgcatatgagggcattcaatctcagaaagaaaaaagcagcatgctttc
cttaatatctaatctcagaatgtaagttgttcattttgtcctagtttgct
ttccgttgctgtgataagacactcagaaagcgacttgggcaggaaaggtt
tacttcagcttacacttccatgtcatacaccatcactgacgggagggagt
ctgactaggaactcaaggcatcaccgtggagacaggagctgaagcagcag
ccacagagaaccctgtttgccagcttgtttcctatggcttgctcagcctg
ctttcttataccctccagggccacctgcccaggggtggcaccacttacat
tggtctgggcccttccatatagtgccccacagacttgcttagaggccaat
ctgatggaggcaaccccccaaatgatagttgctcttcccgtgctcttctt
ctaggtttgagtagtgctcaaaacataatcagcacacacgactattcata
aacaaatgtacacgtgagcacgctatataacatgtagaaaggagaacaag
aaagggtagcattattggatgagaaaatggggtatagataaagggatgtg
agctgtagagaggctagaaagctaattgttttctagtttaaccctggcat
ggattttttagtgttctttcccttttgggggcgggggtgggaaaggtgca
ttaaaaggtgattactatgaacgtgtgccaatcaagcgaagcttcggact
acgcagtggttatttgaaccgggctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49115954_49117159
seq2: B6Ng01-014M10.b_46_1244

seq1  GAATTCTTTTGGTAAGGTAAATTCTAAAAAAGATTCTTACCCCATAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGTAAGGTAAATTCTAAAAAAGATTCTTACCCCATAATTT  50

seq1  TTTATGTTATGAAGTGAATTATGTCAACTGAATGTACTATCATAATTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTATGAAGTGAATTATGTCAACTGAATGTACTATCATAATTGCC  100

seq1  TGGCATAAATACCTGTTTACACTGCTATTTGTTCTTTCATTAATACTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAATACCTGTTTACACTGCTATTTGTTCTTTCATTAATACTCAT  150

seq1  TGAACAGTGATGTTGGGCATTTAGAATGAAGCAACAGAGGACAGTCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTGATGTTGGGCATTTAGAATGAAGCAACAGAGGACAGTCCAAC  200

seq1  TTTCTTTGTAAGAGTAGAGAAATGCAACTTTTGGTCTTTTTCTATTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTAAGAGTAGAGAAATGCAACTTTTGGTCTTTTTCTATTGTTT  250

seq1  TGAGATAAGGTACATAGCTCATGCTAAACTCAAACTCATGATCTTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAGGTACATAGCTCATGCTAAACTCAAACTCATGATCTTCCTGA  300

seq1  CCTGACCTTCTGAGTGCTGGGATTGAAAGCATGTGCTACCATATTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTTCTGAGTGCTGGGATTGAAAGCATGTGCTACCATATTTTATT  350

seq1  TGTAAAATGCTGCAAATAGCTATCATGGAATAGCTATTTTGTGCCAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGCTGCAAATAGCTATCATGGAATAGCTATTTTGTGCCAAGTA  400

seq1  CTCCACTCGTTATTCATGGCCTGTATAGATACCCATAGTATAAAATGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTCGTTATTCATGGCCTGTATAGATACCCATAGTATAAAATGTTG  450

seq1  TCTTCATTTAACAGATGAGAAACTTGAACCTCAGACAACCTCACTAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTAACAGATGAGAAACTTGAACCTCAGACAACCTCACTAACCA  500

seq1  AAATCTTCTAACTTAACCAGGATTAGAACTCAGGTTTCTCTGATCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCTAACTTAACCAGGATTAGAACTCAGGTTTCTCTGATCCTGAA  550

seq1  ATAATCACCTTCTCAGCTACGTAAGTTCATCTGAAATGTTTAGTCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACCTTCTCAGCTACGTAAGTTCATCTGAAATGTTTAGTCTCCAG  600

seq1  AATTACTGATTTCCTTTTCAAATAGCACATTGTCATGTGACAATCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGATTTCCTTTTCAAATAGCACATTGTCATGTGACAATCCACAG  650

seq1  GTGTAAATTTTTAATATGTTTTAGATAAAAGCCAGTTCTTTCTGCCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATTTTTAATATGTTTTAGATAAAAGCCAGTTCTTTCTGCCTTCT  700

seq1  TTCTTTGGAGTCTGGTATCATAGCACACATGATTAGAATATTTCTGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGAGTCTGGTATCATAGCACACATGATTAGAATATTTCTGTAGG  750

seq1  TGCAGATGATCTGTTCAGAATATCAAGAGAATTCCCTGAATATGTGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGATCTGTTCAGAATATCAAGAGAATTCCCTGAATATGTGAACT  800

seq1  GTATTTGGTGACCTTTATAACTGACACAGGATCGGGTCCCTGAGAGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGTGACCTTTATAACTGACACAGGATCGGGTCCCTGAGAGCTAT  850

seq1  GTATGCTTCTGTAGACCTGAAGCAGGACGATGTCAGCTCTTTGAGTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTCTGTAGACCTGAAGCAGGACGATGTCAGCTCTTTGAGTCTTG  900

seq1  CATGGCATGATGGTACAGTGGCAGACTGACAGGAAGCATGGTCCAACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCATGATGGTACAGTGGCAGACTGACAGGAAGCATGGTCCAACTCT  950

seq1  ACCCTCCCAGCAAAGCCTAACCACAGGTGACTCCAGTGCCTTGCCCAGTC  1000
      |||||||||||||||||||  ||||||||||| |||||||||||||||||
seq2  ACCCTCCCAGCAAAGCCTA--CACAGGTGACT-CAGTGCCTTGCCCAGTC  997

seq1  TTTTATGTGTAAATCAGAAATACAACACAAAGGCATTAAGAAATGACTTG  1050
      ||||||||||||||||||||||||||||||| ||| |||| |||||||  
seq2  TTTTATGTGTAAATCAGAAATACAACACAAA-GCA-TAAG-AATGACTGC  1044

seq1  CTCTTGT-GCTTAATTCAATTAGTA-TCTAATTTTCAAAATACTTTTTTT  1098
      ||||||| |||||| |||||||||| ||||   |||||||||||||||||
seq2  CTCTTGTGGCTTAA-TCAATTAGTATTCTA---TTCAAAATACTTTTTTT  1090

seq1  TA-ATCACATGT-TTCCAGGCAGTGGGGAAGGCAGGCA-TGTGCCACAGC  1145
       | | ||||||| || || ||| ||||| ||||||||| ||||||   ||
seq2  AATACCACATGTGTTTCA-GCA-TGGGG-AGGCAGGCATTGTGCCCACGC  1137

seq1  ACAC-ATGTGGCCATCAGAGGCAACTC-TGTGAAGTCCACTCTCATCTTC  1193
      |||| |||||||  ||| ||||| ||| |||| ||| ||||| ||  |||
seq2  ACACAATGTGGCACTCA-AGGCACCTCTTGTGGAGT-CACTC-CACTTTC  1184

seq1  --CACTTCAGGGGGT  1206
        |||||||||||||
seq2  CACACTTCAGGGGGT  1199

seq1: chr2_49262742_49263668
seq2: B6Ng01-014M10.g_71_998 (reverse)

seq1  TTCAGCACGGTTCAAATAACCACTGTGAAGTCCCGGAGCTTCGCCTTGGA  50
      |||||| |||||||||||||||||| | ||| ||| ||||||| ||||  
seq2  TTCAGCCCGGTTCAAATAACCACTGCGTAGT-CCGAAGCTTCG-CTTGAT  48

seq1  TTGCACACCTTCATAGTAATCACATTTTAATGCA-CTTTCCCACCCCCG-  98
      | |||||| |||||||||||||| |||||||||| |||||||||||||| 
seq2  TGGCACACGTTCATAGTAATCACCTTTTAATGCACCTTTCCCACCCCCGC  98

seq1  CCCCAAAAGGGAAAGAACACTAAAAAATCCATGCCAGGGTTAAACTAGAA  148
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCCAAAAGGGAAAGAACACTAAAAAATCCATGCCAGGGTTAAACTAG-A  147

seq1  AAACAATTAGCTTTCTAGCCTCTCTACAGCTCACATCCC-TTATCTATAC  197
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAACAATTAGCTTTCTAGCCTCTCTACAGCTCACATCCCTTTATCTATAC  197

seq1  CCCATTTTCTCATCCAATAATGCTACCCTTTCTTGTTCTCCTTTCTACAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTCTCATCCAATAATGCTACCCTTTCTTGTTCTCCTTTCTACAT  247

seq1  GTTATATAGCGTGCTCACGTGTACATTTGTTTATGAATAGTCGTGTGTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAGCGTGCTCACGTGTACATTTGTTTATGAATAGTCGTGTGTGC  297

seq1  TGATTATGTTTTGAGCACTACTCAAACCTAGAAGAAGAGCACGGGAAGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGTTTTGAGCACTACTCAAACCTAGAAGAAGAGCACGGGAAGAG  347

seq1  CAACTATCATTTGGGGGGTTGCCTCCATCAGATTGGCCTCTAAGCAAGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCATTTGGGGGGTTGCCTCCATCAGATTGGCCTCTAAGCAAGTC  397

seq1  TGTGGGGCACTATATGGAAGGGCCCAGACCAATGTAAGTGGTGCCACCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCACTATATGGAAGGGCCCAGACCAATGTAAGTGGTGCCACCCC  447

seq1  TGGGCAGGTGGCCCTGGAGGGTATAAGAAAGCAGGCTGAGCAAGCCATAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGTGGCCCTGGAGGGTATAAGAAAGCAGGCTGAGCAAGCCATAG  497

seq1  GAAACAAGCTGGCAAACAGGGTTCTCTGTGGCTGCTGCTTCAGCTCCTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGCTGGCAAACAGGGTTCTCTGTGGCTGCTGCTTCAGCTCCTGT  547

seq1  CTCCACGGTGATGCCTTGAGTTCCTAGTCAGACTCCCTCCCGTCAGTGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGGTGATGCCTTGAGTTCCTAGTCAGACTCCCTCCCGTCAGTGAT  597

seq1  GGTGTATGACATGGAAGTGTAAGCTGAAGTAAACCTTTCCTGCCCAAGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATGACATGGAAGTGTAAGCTGAAGTAAACCTTTCCTGCCCAAGTC  647

seq1  GCTTTCTGAGTGTCTTATCACAGCAACGGAAAGCAAACTAGGAC-AAATG  696
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTTTCTGAGTGTCTTATCACAGCAACGGAAAGCAAACTAGGACAAAATG  697

seq1  AACAACTTACATTCTGAGATTAGATATTAAGGAAAGCATGCTGCTTTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTACATTCTGAGATTAGATATTAAGGAAAGCATGCTGCTTTTTT  747

seq1  CTTTCTGAGATTGAATGCCCTCATATGCAATCATATGCATTGATTTTTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAGATTGAATGCCCTCATATGCAATCATATGCATTGATTTTTGT  797

seq1  TCAGTTTCCTTCCTTCCTTTCTTCCTTCTTTCCTTCCTTTTTTTTTTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCCTTCCTTCCTTTCTTCCTTCTTTCCTTCCTTTTTTTTTTTTT  847

seq1  TTTTTTTTTTTTGACAGGGTTTCTCTGTGTAGCCCTAGCTTTCCTGGAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGACAGGGTTTCTCTGTGTAGCCCTAGCTTTCCTGGAAC  897

seq1  TCAAGCTGTAGACCAGGCTGGCCTTGAATTC  927
      |||||||||||||||||||||||||||||||
seq2  TCAAGCTGTAGACCAGGCTGGCCTTGAATTC  928