BAC Information

Click to search

BAC

Clone NameB6Ng01-014M21
Chromosome2 (Build37)
Map Location 35,588,258 - 35,728,339
singlet/doubletdoublet
Overlap geneTtll11
Upstream geneGapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014M21.bB6Ng01-014M21.g
ACCDH849243DH849244
length1,1281,086
definitionDH849243|Mus musculus domesticus DNA, BAC clone: B6Ng01-014M21, 5' end.DH849244|Mus musculus domesticus DNA, BAC clone: B6Ng01-014M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,588,258 - 35,589,406)(35,727,244 - 35,728,339)
sequence
gaattctcgattctcaggccttagtggaagtgcacagatttagaatgacg
ttgctgagcccttctgagtgaagagtgggctctcaatcagtgtgccccca
ttcttttaaagaacagccaatgaatcccaccacaggccaacgtgccccac
cgtcagtggcagtttgctccggggagagggaagggaaacgtcagtgttct
gctttctcttcttcctttgtgctgtttgaatattttacagccagttttat
ttctcgtttggatacggaggagccatttaaaaataaataaaacataccca
atataatgaaacgctgtgcagccattaaatttgtagaagaataataaatg
acattgaaagatgtaaataatgtattaagtgtaaacgctgataacggaat
tatatgtccaggaggattctggtttagcgttttagaccatgttcacaata
acacctgggttgggaaatggtaattggtaggttagagcttgagtttggac
atgcatgagagtgggctttgagccttaatggctattgattggcaacatgg
tcttagcatcatggaaaagcgctccattcttagtttccttgctgtaaaat
gaagaaggtagtgcctgtactgcagggacgtcttcagggaggactgcatt
tgaggaacaaacaagtggtctttataggactataggaggatcgaggagca
tttccaaggacgggagagacagacggctccatggttaactgtgcatcctg
cccttgcaggggacctcgatttggttcctagcacccacatcgagcagctc
gcaaacacttttaagcacatggcttaaaataagatctttaagaagaataa
tttcacaataaaacctaaagtcacacttgggatcatcaaagagagaaatg
ccaagatgtggatcagatgctgacctagggatgctgagtgtgtcctcttg
gcttacgtatgcgctctacatttttttccctcacatgtttttgtgtttat
gatgaatcaattaaaatacctggagctcaatggtaaagcttgcctgcact
gtaaaaagtcagtacatctgaaaaggtaagcattgacccccccccatcac
tcttaagggaaggaataaaagtggtgaa
gaattctttttgctgtttgttagcactacttatttcaatagccgggcacc
tggtgcttgctcccaccttcctcctcgttagctcgtacaaagaaggatca
caagccagaaggaaaggagaaattaaattaatgagaaacctctgtgcatc
tcgaatagccattctctgattctatttttatatgttctcctggaagctgt
cacataattctgtagcagccatttcaaagcatttgtgccagttaatttat
gctgagaaatcattggtgggaatttgacacaggcctggcatgtccgtaag
ccatcaggcttcaaaggacagtgccggtgttagaggcagcccatgaggaa
cactcgggaatgaaaagaagtggacacccgtggcttcttgctggctcctc
tgtcctccctgtcatcatggccactggattcactgagggttactttagtc
aggaactttctggtttaatttagaccctaaccctaccaagtatcgtgatg
ccatttgactgtttctgtgtttgccccaggacttgggcaaagtcagggtt
tgaaccaggcttggctcatgccagatccctcgttagtctcactggagctg
agctgagactgatgcatgcccagagaaggccctgtaaaggcccctgtggc
atttgtgctatagttgcttggtattaatcaacagcttccctcttccccca
aaacatcactgctaatgtgttgctccagcctccttgccctttaaaaatag
tatttctcttcctcccttgatcagtgtgatgtgggaactgaccctacgat
ccacccccaccttgtgtctaagggagggttctgtctccgctctccagaca
ggctagtcagctctcatagttagaagaatccttagtcaccttatttggct
catgattttggagtttcagtacaatgggttgtcttctggtgtttatggac
ctgtgatgaggcagcacatgtggtaaggcacatggaggaatctgctcttc
ttacaggggctgggttctgctttgtggtaaaagcacaagctgctcttgtg
gagtacccaagttggttcacaacccaatgcagggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35588258_35589406
seq2: B6Ng01-014M21.b_44_1171

seq1  GAATTCTCGATTCTCAGGCCTTAGTGGAAGTGCACAGATTTAGAATGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGATTCTCAGGCCTTAGTGGAAGTGCACAGATTTAGAATGACG  50

seq1  TTGCTGAGCCCTTCTGAGTGAAGAGTGGGCTCTCAATCAGTGTGCCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGCCCTTCTGAGTGAAGAGTGGGCTCTCAATCAGTGTGCCCCCA  100

seq1  TTCTTTTAAAGAACAGCCAATGAATCCCACCACAGGCCAACGTGCCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAAAGAACAGCCAATGAATCCCACCACAGGCCAACGTGCCCCAC  150

seq1  CGTCAGTGGCAGTTTGCTCCGGGGAGAGGGAAGGGAAACGTCAGTGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGTGGCAGTTTGCTCCGGGGAGAGGGAAGGGAAACGTCAGTGTTCT  200

seq1  GCTTTCTCTTCTTCCTTTGTGCTGTTTGAATATTTTACAGCCAGTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTTCTTCCTTTGTGCTGTTTGAATATTTTACAGCCAGTTTTAT  250

seq1  TTCTCGTTTGGATACGGAGGAGCCATTTAAAAATAAATAAAACATACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTTTGGATACGGAGGAGCCATTTAAAAATAAATAAAACATACCCA  300

seq1  ATATAATGAAACGCTGTGCAGCCATTAAATTTGTAGAAGAATAATAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGAAACGCTGTGCAGCCATTAAATTTGTAGAAGAATAATAAATG  350

seq1  ACATTGAAAGATGTAAATAATGTATTAAGTGTAAACGCTGATAACGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAAGATGTAAATAATGTATTAAGTGTAAACGCTGATAACGGAAT  400

seq1  TATATGTCCAGGAGGATTCTGGTTTAGCGTTTTAGACCATGTTCACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCCAGGAGGATTCTGGTTTAGCGTTTTAGACCATGTTCACAATA  450

seq1  ACACCTGGGTTGGGAAATGGTAATTGGTAGGTTAGAGCTTGAGTTTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGGTTGGGAAATGGTAATTGGTAGGTTAGAGCTTGAGTTTGGAC  500

seq1  ATGCATGAGAGTGGGCTTTGAGCCTTAATGGCTATTGATTGGCAACATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGAGAGTGGGCTTTGAGCCTTAATGGCTATTGATTGGCAACATGG  550

seq1  TCTTAGCATCATGGAAAAGCGCTCCATTCTTAGTTTCCTTGCTGTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCATCATGGAAAAGCGCTCCATTCTTAGTTTCCTTGCTGTAAAAT  600

seq1  GAAGAAGGTAGTGCCTGTACTGCAGGGACGTCTTCAGGGAGGACTGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGTAGTGCCTGTACTGCAGGGACGTCTTCAGGGAGGACTGCATT  650

seq1  TGAGGAACAAACAAGTGGTCTTTATAGGACTATAGGAGGATCGAGGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACAAACAAGTGGTCTTTATAGGACTATAGGAGGATCGAGGAGCA  700

seq1  TTTCCAAGGACGGGAGAGACAGACGGCTCCATGGTTAACTGTGCATCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGGACGGGAGAGACAGACGGCTCCATGGTTAACTGTGCATCCTG  750

seq1  CCCTTGCAGGGGACCTCGATTTGGTTCCTAGCACCCACATCGAGCAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCAGGGGACCTCGATTTGGTTCCTAGCACCCACATCGAGCAGCTC  800

seq1  GCAAACACTTTTAAGCACATGGCTTAAAATAAGATCTTTAAGAAGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACTTTTAAGCACATGGCTTAAAATAAGATCTTTAAGAAGAATAA  850

seq1  TTTCACAATAAAACCTAAAGTCACACTTGGGATCATCAAAGAGAGAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATAAAACCTAAAGTCACACTTGGGATCATCAAAGAGAGAAATG  900

seq1  CCAAGATGTGGATCAGATGCTGACCTAGGGATGCTGAGTGTGGTCCTCTT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCAAGATGTGGATCAGATGCTGACCTAGGGATGCTGAGTGT-GTCCTCTT  949

seq1  GGCTTACGTATGCGCTCTACATTTTTTTCCCTCAACATGTTTTTGTGTTT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCTTACGTATGCGCTCTACATTTTTTTCCCTC-ACATGTTTTTGTGTTT  998

seq1  ATGATGAAAATCCAATTAAAAAATACCTGGAGCTCAGTGGTAGAGGGCTT  1050
      ||||||||    |||||  ||||||||||||||||| ||||| |  ||||
seq2  ATGATGAA---TCAATT--AAAATACCTGGAGCTCAATGGTAAA--GCTT  1041

seq1  GCCTTGCACTGAAAAAAGTCAGTACAATCTCTAAAAGCGAAGCATTAGAC  1100
      ||| ||||||| ||||||||||||| ||||  |||||  ||||||| || 
seq2  GCC-TGCACTGTAAAAAGTCAGTAC-ATCT-GAAAAGGTAAGCATT-GA-  1086

seq1  CCCCCCCCCCATCACTTCCTTAATGGGGAAGGAAGTAAGAGGTGGTGAA  1149
       |||||||||||||||  |||||  ||||||||| ||| | ||||||||
seq2  -CCCCCCCCCATCACT--CTTAA--GGGAAGGAA-TAA-AAGTGGTGAA  1128

seq1: chr2_35727244_35728339
seq2: B6Ng01-014M21.g_70_1155 (reverse)

seq1  CGCCCTGCATGGGTGTTGGGAACCAAACTTGGGTCCTCCACAAGAGCAGC  50
      |||||||||| || |||| ||||| ||||||||| |||||||||||||||
seq2  CGCCCTGCATTGG-GTTGTGAACC-AACTTGGGTACTCCACAAGAGCAGC  48

seq1  TTGTGCTTTTAACCACAGAGGCAGAACCCCAGCCCCTGTAAGAAGAGCAG  100
      |||||||||| |||||| | |||||| |||||||||||||||||||||||
seq2  TTGTGCTTTT-ACCACA-AAGCAGAA-CCCAGCCCCTGTAAGAAGAGCAG  95

seq1  ATTCCTCCATGTGGCCTTACCACATGTGCTGCCTCATCACAGGTCCATAA  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCATGT-GCCTTACCACATGTGCTGCCTCATCACAGGTCCATAA  144

seq1  ACACCAG-AGACAACCCATTTTGTACTGAAACTTCCAAAATCATGAGCCA  199
      ||||||| ||||||||||  |||||||||||| |||||||||||||||| 
seq2  ACACCAGAAGACAACCCA--TTGTACTGAAAC-TCCAAAATCATGAGCC-  190

seq1  AAATAAGGTGACTTAAGGATTCCTTCTAACTATGAGAGCTGACTAGCCTG  249
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  AAATAAGGTGAC-TAAGGATT-CTTCTAACTATGAGAGCTGACTAGCCTG  238

seq1  TCTGGAGAGCGGAGACAGAACCCTCCCTAAGACACAAGGT-GGGGTGGAT  298
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  TCTGGAGAGCGGAGACAGAACCCTCCCTTAGACACAAGGTGGGGGTGGAT  288

seq1  CGTAGGGTCAGTTCCCACATCACACTGATCAAGGGAGGAAGAGAAATACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGGTCAGTTCCCACATCACACTGATCAAGGGAGGAAGAGAAATACT  338

seq1  ATTTTTAAAGGGCAAGGAGGCTGGAGCAACACATTAGCAGTGATGTTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAGGGCAAGGAGGCTGGAGCAACACATTAGCAGTGATGTTTTG  388

seq1  GGGGAAGAGGGAAGCTGTTGATTAATACCAAGCAACTATAGCACAAATGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAGGGAAGCTGTTGATTAATACCAAGCAACTATAGCACAAATGC  438

seq1  CACAGGGGCCTTTACAGGGCCTTCTCTGGGCATGCATCAGTCTCAGCTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGGCCTTTACAGGGCCTTCTCTGGGCATGCATCAGTCTCAGCTCA  488

seq1  GCTCCAGTGAGACTAACGAGGGATCTGGCATGAGCCAAGCCTGGTTCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTGAGACTAACGAGGGATCTGGCATGAGCCAAGCCTGGTTCAAA  538

seq1  CCCTGACTTTGCCCAAGTCCTGGGGCAAACACAGAAACAGTCAAATGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTTTGCCCAAGTCCTGGGGCAAACACAGAAACAGTCAAATGGCA  588

seq1  TCACGATACTTGGTAGGGTTAGGGTCTAAATTAAACCAGAAAGTTCCTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATACTTGGTAGGGTTAGGGTCTAAATTAAACCAGAAAGTTCCTGA  638

seq1  CTAAAGTAACCCTCAGTGAATCCAGTGGCCATGATGACAGGGAGGACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTAACCCTCAGTGAATCCAGTGGCCATGATGACAGGGAGGACAGA  688

seq1  GGAGCCAGCAAGAAGCCACGGGTGTCCACTTCTTTTCATTCCCGAGTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGCAAGAAGCCACGGGTGTCCACTTCTTTTCATTCCCGAGTGTT  738

seq1  CCTCATGGGCTGCCTCTAACACCGGCACTGTCCTTTGAAGCCTGATGGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGGCTGCCTCTAACACCGGCACTGTCCTTTGAAGCCTGATGGCT  788

seq1  TACGGACATGCCAGGCCTGTGTCAAATTCCCACCAATGATTTCTCAGCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGACATGCCAGGCCTGTGTCAAATTCCCACCAATGATTTCTCAGCAT  838

seq1  AAATTAACTGGCACAAATGCTTTGAAATGGCTGCTACAGAATTATGTGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACTGGCACAAATGCTTTGAAATGGCTGCTACAGAATTATGTGAC  888

seq1  AGCTTCCAGGAGAACATATAAAAATAGAATCAGAGAATGGCTATTCGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAGGAGAACATATAAAAATAGAATCAGAGAATGGCTATTCGAGA  938

seq1  TGCACAGAGGTTTCTCATTAATTTAATTTCTCCTTTCCTTCTGGCTTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAGGTTTCTCATTAATTTAATTTCTCCTTTCCTTCTGGCTTGTG  988

seq1  ATCCTTCTTTGTACGAGCTAACGAGGAGGAAGGTGGGAGCAAGCACCAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTTTGTACGAGCTAACGAGGAGGAAGGTGGGAGCAAGCACCAGG  1038

seq1  TGCCCGGCTATTGAAATAAGTAGTGCTAACAAACAGCAAAAAGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGCTATTGAAATAAGTAGTGCTAACAAACAGCAAAAAGAATTC  1086