BAC Information

Click to search

BAC

Clone NameB6Ng01-014N10
Chromosome2 (Build37)
Map Location 119,297,158 - 119,428,689
singlet/doubletdoublet
Overlap geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307
Upstream geneEif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1
Downstream geneOip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014N10.bB6Ng01-014N10.g
ACCDH849269DH849270
length1,039903
definitionDH849269|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N10, 5' end.DH849270|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,427,645 - 119,428,689)(119,297,158 - 119,298,062)
sequence
gaattccattttatagaaaactttatttttcagaacaaagcaactacttt
attttcataaggaaagtagaaaaaatgtgaaagctctcaacaattaccaa
aggaaggccaacatactttttgtcaacctacatgggccccactgagctat
cagttctcatgagagagactggactcaacacccaagtcagatgtagaatg
gggcaaagcctaaagtacaggatactccaaactgctgacaaggctttgca
gttagcacacatgctgcaagcaggaaaggaaatggccacagagtaaacat
tccaaagcaatcagcacggcatctcagacatgcaaaacagaaaattattt
tctggacacaaaagaggaaaagtgaacccaaaacatacaatgcaaaatca
atacaggaccaatctagcttcaaacttagagagcaagagaagcctgaacc
caggccttgctgtgaggactaaagggctacaaaggtagctattctagctc
ccccgtgaaaggcctaacattcccccaagcgcagtggctctcagtgggaa
gccacacttctgttcagacattagttgttttggccttttctcctatccgc
agggagactatcaaatattcatatacaaaaaaagtaaaggtctaggattt
tccacactttttacactactggttattatcaatatttcatcttgaagttt
aaaattatactaaattcatgcactaacccctaacatggcactacaatatg
ctatcaagcactactgcttacaaaactatacacatctcaaaatggaagac
attggtgattttgttgttcttaaacaacttgtaacacttgtccacaagta
ttaaaatatacattatatatatatttatatatattgcacatatcccgttt
ttgttagaaacttcaaaagaaaactgccagcttacatgagaaaggaggag
ccacagctataaatggaggcacactctaaatggtagtcttgctgcaatta
gaagaaaaactcaagtaagactataaatggaatgtgccc
gaattcttatagaaaaagagccagtgacaatttagggggaaacctggaag
tatagttatgatgacactggttttgggtttggcaatatagttcaattggt
agacctctcgggccctgggttttaaccccatcaccatatagactgggtat
ggtggcacatgtctaaaattgtagctctttggagatggtggcataaacca
agaattcagttagccttcactgacagcctgggctacaagacaacttacct
caaacaaacaaaaaatgttctttaaaatatttctgggagccgggtgtggt
ggcgcacgcctttaatcccagcactcgggaggcatggcaggcggatttct
gagttcgaggccagcctggtctacaaagtgagctccaggacagccagggc
tatacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaattctgggaaattaaaaaagaacactgctgggggctggcga
gatgactcagtggttaagggcgcctactgctcttccaaaggtcccaagtt
caaatcccagcaaccacatggtggctcacaaccatctgtaacgaaatctg
atgcccttttctggagtgtctgaagacagctacagcgtacttacatataa
taaataaataaatctttaaaaaaaaaaacacactgcccacttactggcca
tctgattttactgaaatactatttgtccacctgtaaaatagggataaacc
ccaaccaaatttattgaaaatttctaaagataggtatttaccttgctaac
tagccttattttattattttacctaataaacaatttatacataaatctat
tatatgtttgaatatattacgatatatacttacctcattatgtaattttt
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119427645_119428689
seq2: B6Ng01-014N10.b_48_1085 (reverse)

seq1  GGCACATTTCCATTTATAGTCTTACTTGAG-TTTTCTTCTTAATAGCAGC  49
      |||||| ||||||||||||||||||||||| |||||||| |||| |||||
seq2  GGCACA-TTCCATTTATAGTCTTACTTGAGTTTTTCTTC-TAATTGCAGC  48

seq1  AAAGACTACCATTTTAGAGTTGTGCCTCCATTTATAGCTGTGCCTCCTCC  99
       |||||||||| ||||||| |||||||||||||||||||||| |||||||
seq2  -AAGACTACCA-TTTAGAG-TGTGCCTCCATTTATAGCTGTGGCTCCTCC  95

seq1  CTTCTCCATGTAAGCTGGCAGTTTTTCTTTTGAAGTTTCTAAACAAAAAC  149
       |||| ||||||||||||||| |||||||||||||||||| |||||||||
seq2  TTTCT-CATGTAAGCTGGCAG-TTTTCTTTTGAAGTTTCT-AACAAAAAC  142

seq1  GGGATATGTGCAATATATATAAATATATATATAATGTATATTTTAATACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATGTGCAATATATATAAATATATATATAATGTATATTTTAATACT  192

seq1  TGTGGACAAGTGTTACAAGTTGTTTAAGAACAACAAAATCACCAATGTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACAAGTGTTACAAGTTGTTTAAGAACAACAAAATCACCAATGTCT  242

seq1  TCCATTTTGAGATGTGTATAGTTTTGTAAGCAGTAGTGCTTGATAGCATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTGAGATGTGTATAGTTTTGTAAGCAGTAGTGCTTGATAGCATA  292

seq1  TTGTAGTGCCATGTTAGGGGTTAGTGCATGAATTTAGTATAATTTTAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTGCCATGTTAGGGGTTAGTGCATGAATTTAGTATAATTTTAAAC  342

seq1  TTCAAGATGAAATATTGATAATAACCAGTAGTGTAAAAAGTGTGGAAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATGAAATATTGATAATAACCAGTAGTGTAAAAAGTGTGGAAAAT  392

seq1  CCTAGACCTTTACTTTTTTTGTATATGAATATTTGATAGTCTCCCTGCGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACCTTTACTTTTTTTGTATATGAATATTTGATAGTCTCCCTGCGG  442

seq1  ATAGGAGAAAAGGCCAAAACAACTAATGTCTGAACAGAAGTGTGGCTTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGAAAAGGCCAAAACAACTAATGTCTGAACAGAAGTGTGGCTTCC  492

seq1  CACTGAGAGCCACTGCGCTTGGGGGAATGTTAGGCCTTTCACGGGGGAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGCCACTGCGCTTGGGGGAATGTTAGGCCTTTCACGGGGGAGC  542

seq1  TAGAATAGCTACCTTTGTAGCCCTTTAGTCCTCACAGCAAGGCCTGGGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGCTACCTTTGTAGCCCTTTAGTCCTCACAGCAAGGCCTGGGTT  592

seq1  CAGGCTTCTCTTGCTCTCTAAGTTTGAAGCTAGATTGGTCCTGTATTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTCTTGCTCTCTAAGTTTGAAGCTAGATTGGTCCTGTATTGAT  642

seq1  TTTGCATTGTATGTTTTGGGTTCACTTTTCCTCTTTTGTGTCCAGAAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTGTATGTTTTGGGTTCACTTTTCCTCTTTTGTGTCCAGAAAAT  692

seq1  AATTTTCTGTTTTGCATGTCTGAGATGCCGTGCTGATTGCTTTGGAATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGTTTTGCATGTCTGAGATGCCGTGCTGATTGCTTTGGAATGT  742

seq1  TTACTCTGTGGCCATTTCCTTTCCTGCTTGCAGCATGTGTGCTAACTGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTGTGGCCATTTCCTTTCCTGCTTGCAGCATGTGTGCTAACTGCA  792

seq1  AAGCCTTGTCAGCAGTTTGGAGTATCCTGTACTTTAGGCTTTGCCCCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGTCAGCAGTTTGGAGTATCCTGTACTTTAGGCTTTGCCCCATT  842

seq1  CTACATCTGACTTGGGTGTTGAGTCCAGTCTCTCTCATGAGAACTGATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTGACTTGGGTGTTGAGTCCAGTCTCTCTCATGAGAACTGATAG  892

seq1  CTCAGTGGGGCCCATGTAGGTTGACAAAAAGTATGTTGGCCTTCCTTTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGGCCCATGTAGGTTGACAAAAAGTATGTTGGCCTTCCTTTGG  942

seq1  TAATTGTTGAGAGCTTTCACATTTTTTCTACTTTCCTTATGAAAATAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTGAGAGCTTTCACATTTTTTCTACTTTCCTTATGAAAATAAAG  992

seq1  TAGTTGCTTTGTTCTGAAAAATAAAGTTTTCTATAAAATGGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCTTTGTTCTGAAAAATAAAGTTTTCTATAAAATGGAATTC  1038

seq1: chr2_119297158_119298062
seq2: B6Ng01-014N10.g_70_972

seq1  GAATTCTTATAGAAAAAGAGCCAGTGACAATTTAGGGGGAAACCTGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAGAAAAAGAGCCAGTGACAATTTAGGGGGAAACCTGGAAG  50

seq1  TATAGTTATGATGACACTGGTTTTGGGTTTGGCAATATAGTTCAATTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTATGATGACACTGGTTTTGGGTTTGGCAATATAGTTCAATTGGT  100

seq1  AGACCTCTCGGGCCCTGGGTTTTAACCCCATCACCATATAGACTGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTCGGGCCCTGGGTTTTAACCCCATCACCATATAGACTGGGTAT  150

seq1  GGTGGCACATGTCTAAAATTGTAGCTCTTTGGAGATGGTGGCATAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACATGTCTAAAATTGTAGCTCTTTGGAGATGGTGGCATAAACCA  200

seq1  AGAATTCAGTTAGCCTTCACTGACAGCCTGGGCTACAAGACAACTTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAGTTAGCCTTCACTGACAGCCTGGGCTACAAGACAACTTACCT  250

seq1  CAAACAAACAAAAAATGTTCTTTAAAATATTTCTGGGAGCCGGGTGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAAATGTTCTTTAAAATATTTCTGGGAGCCGGGTGTGGT  300

seq1  GGCGCACGCCTTTAATCCCAGCACTCGGGAGGCATGGCAGGCGGATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCACGCCTTTAATCCCAGCACTCGGGAGGCATGGCAGGCGGATTTCT  350

seq1  GAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGC  400

seq1  TATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAA  450

seq1  AAAAAAAAAATTCTGGGAAATTAAAAAAGAACACTGCTGGGGGCTGGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATTCTGGGAAATTAAAAAAGAACACTGCTGGGGGCTGGCGA  500

seq1  GATGACTCAGTGGTTAAGGGCGCCTACTGCTCTTCCAAAGGTCCCAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCAGTGGTTAAGGGCGCCTACTGCTCTTCCAAAGGTCCCAAGTT  550

seq1  CAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAAATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAAATCTG  600

seq1  ATGCCCTTTTCTGGAGTGTCTGAAGACAGCTACAGCGTACTTACATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTTTCTGGAGTGTCTGAAGACAGCTACAGCGTACTTACATATAA  650

seq1  TAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAAACACTG-CCACTTAC  699
      |||||||||||||||||      ||||||||||| |||||| ||||||||
seq2  TAAATAAATAAATCTTT------AAAAAAAAAAACACACTGCCCACTTAC  694

seq1  TGGCCATCTGATTTTACTG-AATACTATTTTGTCACCTGTAAAATAGGGA  748
      ||||||||||||||||||| ||||||||||   |||||||||||||||||
seq2  TGGCCATCTGATTTTACTGAAATACTATTTGTCCACCTGTAAAATAGGGA  744

seq1  TAAACACCAACCAAATTTATTGAAAA-TTCTAAAGATAAGGTATTTACCT  797
      ||||| |||||||||||||||||||| |||||||||| ||||||||||||
seq2  TAAACCCCAACCAAATTTATTGAAAATTTCTAAAGAT-AGGTATTTACCT  793

seq1  TGCTAACTAG-CTTA-TTTATTA-TTTACTTATTAAACAAATTTATACAT  844
      |||||||||| |||| ||||||| ||||| || ||||| |||||||||||
seq2  TGCTAACTAGCCTTATTTTATTATTTTACCTAATAAAC-AATTTATACAT  842

seq1  AAATCTATATAATGTTTAAATATATTACTAAATATACTTA-CTCATTTAT  893
      ||||||||   |||||| |||||||||| | ||||||||| |||| ||||
seq2  AAATCTATTATATGTTTGAATATATTACGATATATACTTACCTCA-TTAT  891

seq1  GTAATTTTTTTT  905
      ||||||||||||
seq2  GTAATTTTTTTT  903