BAC Information

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BAC

Clone NameB6Ng01-014O09
Chromosome2 (Build37)
Map Location 159,360,237 - 159,547,539
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689, Gm826, Mafb, LOC100043892, Top1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014O09.bB6Ng01-014O09.g
ACCDH849312DH849313
length1,127913
definitionDH849312|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O09, 5' end.DH849313|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,360,237 - 159,361,390)(159,547,001 - 159,547,539)
sequence
gaattcaactgttacacagcatctattcttagtttgctccattacctgtg
agatgcacccatgctttgagattcagatgctctaagatggaatggatggg
agagacctcagtttatatacatccttgttccccatacgtcttctcaattg
ggagaggttggattctaaatggtccatctcagtgaagccttggatttcaa
cagtctgagtctaatagggctctgcctgtgtctgacacagaagagaacat
tctttctgtgccctggacagagcccccatcccagtgtatcagggcatcgt
ctcctagcatgcataggaagcaatcactaattattggtcttcatgtggct
taaggcaaatgaaacgttgaagctcagcctttccattcagccccatcttc
gggctcatctcctcccatcgtcaaatcataagggtctagggctctgaagt
gcccagtagtgtctggttgtgcctcctgaggcagacattactatccctac
tttttctggttttcatttccttttcttgtctgctaggcttttaaaataca
tattgcagccacttgttgccctgttttctaagctgccttgaactggtgcc
aggggctgttgccagaggagctaatgactaagtcactctcctttcagcct
ctgggaggacaagaaattcacttggggatgggggcagcacaggcacaatc
atcctgaaccaatcaggaaaccacaataaagtgccggccagggactcacc
ctcaaagcccagcactgaactcagcttggaggtgacagccaggcccggga
tgctgtagtttgttccagaggaaccacatcagaagtggagactcagtcag
aaaggctgacccataagagaggctctggcggggaggggtatcccatggta
aacagagacacaaactcactgtgtttctgagcagacgagagatgaaacgc
agaatgaacagcagcaagcatgatgatataatcatagctatactcatatc
taagagttataaagtgccatcttattcatcctcctaggttcccgttaggg
aggcaatcttcttttcatgaatacccgatgttcctcggtggtatgtcatg
tgtaccccaacttgtgagtttaatgtg
gaattctctccttggcatattttggtgagtgtgtctgtgtgtggtgtaga
taagccacatgctgttttcatcttttccgttgatggatgcttgtgctact
gtgagtaatactacaaaaatgtgagtatgaagacatttccttagtaaact
aggatcatttctcttaggtttataacctgaaggacttatgactcatttgg
tagcttattctaattattctaaggcactgccatattctgtccctaatagc
tgtatatgacattcgttgccaacactttgcaagggctttctctttttttt
ctcatccgttttaacactggttataattttaacgacatttattatgagat
gagatgttgggaccataaaaatcaattcactatgattgctaatgttgatc
atttattataattactgcatacaattgtgtctccttttaagaaataacaa
aacatttctttgttttgtttctgttttaaattggattattttattactgt
tgaattgtctgaatgcctcatatattctagatattaactcctgtcagggt
catagtttgaaaatacttttccttcactctactgataatttcctctgcca
ttcagaagaatatgtctctaatgtggtgtaattcagttttctttattctc
agtttggagcttgtggattctagacagttgatcaaaagccattgctcaca
tgagtgtctcacagatttttttctgtcatcttctaacagtttcatagctc
agagtcttagtttaaatccttaatccatttttatggactttttctagaat
gggagatgatagactctctttcatttctccacctgaatgtgatatagctt
ttctcaacagtatttatcaagaaactttctttcaccattgtctgttctgg
tgctttgttgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_159360237_159361390
seq2: B6Ng01-014O09.b_48_1174

seq1  GAATTCAACTGTTACACAGCATCTATTCTTAGTTTGCTCCATTACCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTTACACAGCATCTATTCTTAGTTTGCTCCATTACCTGTG  50

seq1  AGATGCACCCATGCTTTGAGATTCAGATGCTCTAAGATGGAATGGATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACCCATGCTTTGAGATTCAGATGCTCTAAGATGGAATGGATGGG  100

seq1  AGAGACCTCAGTTTATATACATCCTTGTTCCCCATACGTCTTCTCAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTCAGTTTATATACATCCTTGTTCCCCATACGTCTTCTCAATTG  150

seq1  GGAGAGGTTGGATTCTAAATGGTCCATCTCAGTGAAGCCTTGGATTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTTGGATTCTAAATGGTCCATCTCAGTGAAGCCTTGGATTTCAA  200

seq1  CAGTCTGAGTCTAATAGGGCTCTGCCTGTGTCTGACACAGAAGAGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGAGTCTAATAGGGCTCTGCCTGTGTCTGACACAGAAGAGAACAT  250

seq1  TCTTTCTGTGCCCTGGACAGAGCCCCCATCCCAGTGTATCAGGGCATCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTGCCCTGGACAGAGCCCCCATCCCAGTGTATCAGGGCATCGT  300

seq1  CTCCTAGCATGCATAGGAAGCAATCACTAATTATTGGTCTTCATGTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGCATGCATAGGAAGCAATCACTAATTATTGGTCTTCATGTGGCT  350

seq1  TAAGGCAAATGAAACGTTGAAGCTCAGCCTTTCCATTCAGCCCCATCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAAATGAAACGTTGAAGCTCAGCCTTTCCATTCAGCCCCATCTTC  400

seq1  GGGCTCATCTCCTCCCATCGTCAAATCATAAGGGTCTAGGGCTCTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCATCTCCTCCCATCGTCAAATCATAAGGGTCTAGGGCTCTGAAGT  450

seq1  GCCCAGTAGTGTCTGGTTGTGCCTCCTGAGGCAGACATTACTATCCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTAGTGTCTGGTTGTGCCTCCTGAGGCAGACATTACTATCCCTAC  500

seq1  TTTTTCTGGTTTTCATTTCCTTTTCTTGTCTGCTAGGCTTTTAAAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGGTTTTCATTTCCTTTTCTTGTCTGCTAGGCTTTTAAAATACA  550

seq1  TATTGCAGCCACTTGTTGCCCTGTTTTCTAAGCTGCCTTGAACTGGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAGCCACTTGTTGCCCTGTTTTCTAAGCTGCCTTGAACTGGTGCC  600

seq1  AGGGGCTGTTGCCAGAGGAGCTAATGACTAAGTCACTCTCCTTTCAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGTTGCCAGAGGAGCTAATGACTAAGTCACTCTCCTTTCAGCCT  650

seq1  CTGGGAGGACAAGAAATTCACTTGGGGATGGGGGCAGCACAGGCACAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGACAAGAAATTCACTTGGGGATGGGGGCAGCACAGGCACAATC  700

seq1  ATCCTGAACCAATCAGGAAACCACAATAAAGTGCCGGCCAGGGACTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAACCAATCAGGAAACCACAATAAAGTGCCGGCCAGGGACTCACC  750

seq1  CTCAAAGCCCAGCACTGAACTCAGCTTGGAGGTGACAGCCAGGCCGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCAAAGCCCAGCACTGAACTCAGCTTGGAGGTGACAGCCAGGCCCGGGA  800

seq1  TGCTGTAGTTTGTTCCAGAGGAACCACATCAGAAGTGGAGACTCAGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAGTTTGTTCCAGAGGAACCACATCAGAAGTGGAGACTCAGTCAG  850

seq1  AAAGGCTGACCCATAAGAGAGGCTCTGGCGGGGAGGGGTATCCCATGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGACCCATAAGAGAGGCTCTGGCGGGGAGGGGTATCCCATGGTA  900

seq1  AACAGAGAACACAAACTCACTGTGTTTCTGAGCCAGGACGAGAGATGAAA  950
      ||||||| |||||||||||||||||||||||||   ||||||||||||||
seq2  AACAGAG-ACACAAACTCACTGTGTTTCTGAGC--AGACGAGAGATGAAA  947

seq1  CGCAGGAAATGAAACCAAGCAAGCAAAGCATGATGATAATAAATCATAGC  1000
      |||||  ||||||    ||| ||| |||||||||||||   |||||||||
seq2  CGCAG--AATGAA---CAGC-AGC-AAGCATGATGATA--TAATCATAGC  988

seq1  TAATACTCATTATCTAAAGAGTTATAAAGTGCCATCTTATTCCATCTCTC  1050
      | ||||||| ||||| ||||||||||||||||||||||||| ||||   |
seq2  T-ATACTCA-TATCT-AAGAGTTATAAAGTGCCATCTTATT-CATCCTCC  1034

seq1  TAGTGTCTCTGTTAGGGAGGCCATATTCTTCTTTTCCATGAATACACGAA  1100
      ||| ||  | |||||||||||   | ||||||||| ||||||||| || |
seq2  TAG-GTTCCCGTTAGGGAGGC---AATCTTCTTTT-CATGAATACCCG-A  1078

seq1  TGTTCCTCTGTGTGTATGTACATGTGTACCCCAACCTTTGTGAATGTTTA  1150
      |||||||| ||| |||||| |||||||||||||||  |||||| | || |
seq2  TGTTCCTCGGTG-GTATGT-CATGTGTACCCCAAC--TTGTGAGT-TTAA  1123

seq1  TGTG  1154
      ||||
seq2  TGTG  1127

seq1: chr2_159547001_159547539
seq2: B6Ng01-014O09.g_71_609 (reverse)

seq1  AGTTAATATCTAGAATATATGAGGCATTCAGACAATTCAACAGTAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATATCTAGAATATATGAGGCATTCAGACAATTCAACAGTAATAAA  50

seq1  ATAATCCAATTTAAAACAGAAACAAAACAAAGAAATGTTTTGTTATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCAATTTAAAACAGAAACAAAACAAAGAAATGTTTTGTTATTTCT  100

seq1  TAAAAGGAGACACAATTGTATGCAGTAATTATAATAAATGATCAACATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAGACACAATTGTATGCAGTAATTATAATAAATGATCAACATTA  150

seq1  GCAATCATAGTGAATTGATTTTTATGGTCCCAACATCTCATCTCATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATAGTGAATTGATTTTTATGGTCCCAACATCTCATCTCATAATA  200

seq1  AATGTCGTTAAAATTATAACCAGTGTTAAAACGGATGAGAAAAAAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCGTTAAAATTATAACCAGTGTTAAAACGGATGAGAAAAAAAAGAG  250

seq1  AAAGCCCTTGCAAAGTGTTGGCAACGAATGTCATATACAGCTATTAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTTGCAAAGTGTTGGCAACGAATGTCATATACAGCTATTAGGGA  300

seq1  CAGAATATGGCAGTGCCTTAGAATAATTAGAATAAGCTACCAAATGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATGGCAGTGCCTTAGAATAATTAGAATAAGCTACCAAATGAGTC  350

seq1  ATAAGTCCTTCAGGTTATAAACCTAAGAGAAATGATCCTAGTTTACTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCCTTCAGGTTATAAACCTAAGAGAAATGATCCTAGTTTACTAAG  400

seq1  GAAATGTCTTCATACTCACATTTTTGTAGTATTACTCACAGTAGCACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCTTCATACTCACATTTTTGTAGTATTACTCACAGTAGCACAAG  450

seq1  CATCCATCAACGGAAAAGATGAAAACAGCATGTGGCTTATCTACACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCAACGGAAAAGATGAAAACAGCATGTGGCTTATCTACACCACA  500

seq1  CACAGACACACTCACCAAAATATGCCAAGGAGAGAATTC  539
      |||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACACTCACCAAAATATGCCAAGGAGAGAATTC  539