BAC Information

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BAC

Clone NameB6Ng01-016A13
Chromosome2 (Build37)
Map Location 86,449,069 - 86,450,194
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083
Downstream geneOlfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016A13.bB6Ng01-016A13.g
ACCDH850126DH850127
length1,2121,118
definitionDH850126|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A13, 5' end.DH850127|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgcctagctctgctccctcaattttttaattgggttgtttgt
ttctctgaaatctaacttcttgagtttattatatattggatattatccct
ctattgtatgtaggattggtaaagatttagtcccactctgttggttgtag
ttttgtcctattgacagtgtcctttgccttgtaattttatgaagtcccat
ttgtagattgctgatctaagagcatcagccactggtgttctgttcaggaa
aaatttccctgtgcccatgtgtttgaggcccttccccatattttgtctat
tagattcactgtatttggttttatgtggaggtccttgattcactttgact
tgagcattgtacagggagataagaatggatcaatttgcattcttctacat
gttgaccaccagttgaataaacaacatttgttgaaaatgctttctctccc
ccccctcgaccccctactggatgtttttagattctttgcaaagatcaagg
gaccataggtgtgtggttttatttttgggacttgaattctcttccattga
taaacctgcctggctctttatcaatatcatacaattttttgtcactattg
ctctatagtacagtttgaagtcagggatgttgattccccagaaattcttt
tattgttgaaaataatttttgctatcctgggttttttgttattccaaatg
aatttgagaattgctttctctaactctacaaagaattgatttggaatttc
atttgagactatactgaatctgtagattttttttttccggcaagatggca
aatttactacattaatcctgccaatctatggagcatgggagatttttcca
tcttctaaggtcttcttcaatttctttcttcagagttttaaattgatgtc
gtacagatcttttacttctttggttagagacaaatcaagatattttatgt
tgtttgtgactattttgaatgtcatcctttccctaatttctcctcagccc
ttatctctgcatgtaagagatgacaggctgttagtaatatttatcagcca
ctttgctgaagttgttatcagctagggtctctggtgcatttttgtggtca
attagtaactatccaattatctgcatagtctattggactcactttcaatt
gtcatgactcttgtgtcaatgccagcctgaacactcagacatctatggag
tgaagcatctga
gaattcttgtatcaaaataaacagaagcacacacatacacacatatactt
gatatattttattcattctctgtggtattgtattctttaatactggttct
atacaccataaagctacatgaaattccttacaaaacattcatactatagt
ttgtagtatatattattattttttccaaaaaaatttacaaaatgcttaat
tgcataaatccaatttaaatggcctattttcttcagtcttcttaaatgta
cacaattcttccaggttcctcaacaatatattaaatgaaatttgttatat
ttgaatacaaatataattaaaatattcacaatagaactttaagacttaaa
attataaacattacaagaaaagaaaagcaaaaaccacaattctgcatgtc
tcactttagtcaggcaatgagagtcagtggggaatgctctgaattttctt
aatatttatgtcctaattaacatttaattatctattcatcattgtatcac
agtaacaggattgaagtcctacagaagaataatcatgtaaatatacttct
ttcttaaaagtttacttgggattaaagagtaaaaactgtttaactctaaa
gggagaaggaagaagactaaccagggataaattggtgggtctttatcaca
aaacaattttagcagatcagggtatttggtagtagagctgttgcttacca
tgaccatagagatctagataatatgggaaagcagaatcctttcatcttca
tctgttcaacatggtaaggacttcatgacttttaacatatggagaattat
atcagtatagtgcctgtgcaaggcatccttcaagtatatcacatattgca
tatcatgttatacctcatatttacatggagttcctttttgtttactcata
aagacatttcaattattctatgttttaatattttatgtacataaatatcc
atatttacaaatgttttatgaagatgtaacacctgtaggtatagactgtg
ctttgaaatgatttgttctatgcatttttagatttggcattttgaaatca
tagcctgaaattgtagtttacttggtgacattcaaatgtggattgtagtt
tgtttcttatcaggtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_86449069_86450194
seq2: B6Ng01-016A13.g_67_1184 (reverse)

seq1  TTTACCTGATTAAGAAACAATACTTACAATCAACATTTTGAATGTCACCA  50
      ||||||||| |||||||||| || ||||||| ||| ||||||||||||||
seq2  TTTACCTGA-TAAGAAACAA-AC-TACAATCCACA-TTTGAATGTCACCA  46

seq1  AGTAAACTACAATTTCAGGCTATGATTTCATAATGCCAAATTCTAAAAAT  100
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  AGTAAACTACAATTTCAGGCTATGATTTCAAAATGCCAAA-TCTAAAAAT  95

seq1  GCATAG-ACAAATCATTTCAAAGCACAGTTCTTATACCTACAGGTGTTAC  149
      |||||| ||||||||||||||||||||||   ||||||||||||||||||
seq2  GCATAGAACAAATCATTTCAAAGCACAGT--CTATACCTACAGGTGTTAC  143

seq1  ATCTTCATAAAACATTTGTAAATATTGGATATTTATGTACATAAAATATT  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCTTCATAAAACATTTGTAAATA-TGGATATTTATGTACATAAAATATT  192

seq1  AAAACATAGAATAATTGAAATTGTCTTTATGAGTAAACAAAAAGGAACTC  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAACATAGAATAATTGAAA-TGTCTTTATGAGTAAACAAAAAGGAACTC  241

seq1  CATGTAAATATGAGGTATAACATGATATGCAATATGTGATATACTTGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAATATGAGGTATAACATGATATGCAATATGTGATATACTTGAAG  291

seq1  GATGCCTTGCACAGGCACTATACTGATATAATTCTCCATATGTTAAAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTTGCACAGGCACTATACTGATATAATTCTCCATATGTTAAAAGT  341

seq1  CATGAAGTCCTTACCATGTTGAACAGATGAAGATGAAAGGATTCTGCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTCCTTACCATGTTGAACAGATGAAGATGAAAGGATTCTGCTTT  391

seq1  CCCATATTATCTAGATCTCTATGGTCATGGTAAGCAACAGCTCTACTACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTATCTAGATCTCTATGGTCATGGTAAGCAACAGCTCTACTACC  441

seq1  AAATACCCTGATCTGCTAAAATTGTTTTGTGATAAAGACCCACCAATTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCCTGATCTGCTAAAATTGTTTTGTGATAAAGACCCACCAATTTA  491

seq1  TCCCTGGTTAGTCTTCTTCCTTCTCCCTTTAGAGTTAAACAGTTTTTACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTTAGTCTTCTTCCTTCTCCCTTTAGAGTTAAACAGTTTTTACT  541

seq1  CTTTAATCCCAAGTAAACTTTTAAGAAAGAAGTATATTTACATGATTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAAGTAAACTTTTAAGAAAGAAGTATATTTACATGATTATT  591

seq1  CTTCTGTAGGACTTCAATCCTGTTACTGTGATACAATGATGAATAGATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAGGACTTCAATCCTGTTACTGTGATACAATGATGAATAGATAA  641

seq1  TTAAATGTTAATTAGGACATAAATATTAAGAAAATTCAGAGCATTCCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTAATTAGGACATAAATATTAAGAAAATTCAGAGCATTCCCCA  691

seq1  CTGACTCTCATTGCCTGACTAAAGTGAGACATGCAGAATTGTGGTTTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTCATTGCCTGACTAAAGTGAGACATGCAGAATTGTGGTTTTTG  741

seq1  CTTTTCTTTTCTTGTAATGTTTATAATTTTAAGTCTTAAAGTTCTATTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTGTAATGTTTATAATTTTAAGTCTTAAAGTTCTATTGT  791

seq1  GAATATTTTAATTATATTTGTATTCAAATATAACAAATTTCATTTAATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTAATTATATTTGTATTCAAATATAACAAATTTCATTTAATAT  841

seq1  ATTGTTGAGGAACCTGGAAGAATTGTGTACATTTAAGAAGACTGAAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGAGGAACCTGGAAGAATTGTGTACATTTAAGAAGACTGAAGAAA  891

seq1  ATAGGCCATTTAAATTGGATTTATGCAATTAAGCATTTTGTAAATTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCATTTAAATTGGATTTATGCAATTAAGCATTTTGTAAATTTTTT  941

seq1  TGGAAAAAATAATAATATATACTACAAACTATAGTATGAATGTTTTGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAATAATAATATATACTACAAACTATAGTATGAATGTTTTGTAA  991

seq1  GGAATTTCATGTAGCTTTATGGTGTATAGAACCAGTATTAAAGAATACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCATGTAGCTTTATGGTGTATAGAACCAGTATTAAAGAATACAA  1041

seq1  TACCACAGAGAATGAATAAAATATATCAAGTATATGTGTGTATGTGTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGAGAATGAATAAAATATATCAAGTATATGTGTGTATGTGTGTG  1091

seq1  CTTCTGTTTATTTTGATACAAGAATTC  1126
      |||||||||||||||||||||||||||
seq2  CTTCTGTTTATTTTGATACAAGAATTC  1118