BAC Information

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BAC

Clone NameB6Ng01-016K06
Chromosome2 (Build37)
Map Location 89,784,241 - 89,909,839
singlet/doubletdoublet
Overlap geneOlfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1
Upstream geneOlfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258
Downstream geneOlfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016K06.bB6Ng01-016K06.g
ACCDH850548DH850549
length1,124739
definitionDH850548|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K06, 5' end.DH850549|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,908,695 - 89,909,839)(89,784,241 - 89,784,977)
sequence
gaattctctcaaacattttttcattcctacttagaagatattggctcctt
tattgttgttttacctgcaaatccatttagcttttagctttcaaagatga
ttcttttgtaaatatatcttacatattaataattgtaaactaaagacaag
ctattctaactcaacctaacccaaacaaaaccagggctgggaagatgggt
tacttggttaaaaggttgtcatgcaagattgaggacccaaacttaatcca
cagcaaccatgtgatgagaaggtgtttaattttaagcctagtcctgagga
ggcagagacagttggttatatcagatttgctgtccagtcagcctaggaaa
atttacaagccccatgacccattaagagacactgtctcaaaaaaaatatg
gatggcacctctgagtaatttcacatggaaattccttcttgcctccacat
atgccacatgttcccaacatttctatgaatgggttggtagtggattcttg
taccagaatcttaggatattagattcctaaaggtggtgctaactaaactc
ctaaaggtggtctacctgcatccactgcaagagtactttagggaacccac
ttccatagatgtcatgaactgtgtgataaggtaaataaaagtatactcaa
ctatgctctaatactttatactttgcttttatcatatacaagctccggag
cctggtaatttttaccatttgtagaataattagagttgaggaattctatc
actaattggacagcattgacctcctcccagtatagatggggctatatcat
cagttaagtcattatgagtaggagatttggagcagacatttaaaagaatg
caaacaacagtttcttatctccaaaatacaaacaaatacaaacaaagttt
cttatctccaaaataatcttaaattccctctgcattgtatcatgtatagc
ttccttcatttgctagatagagtccagttgtttccctattctttctctgc
tgtttatcatttgataaaagaaggcaactgattatttgagttattttgta
gcagcactgcgagttaacagttgtaagagtctctggaaggatccgggagt
tgctcatatactattaatcagcca
gaattcagtcacattccttttattctccatctgtgtgatatggttaattt
ttcttaaatccctccccaaaaatattttatcttcaggagaaaagaaagga
gaaatcataaaatgattaaatagtctcaaattctaatcttatgagttcta
ccaagtcacagatgaaacctagtcttcccaaaactctataggtctaacct
tctcttaggtacttttttttttttttttttttttttggtaattgaaaggg
attcttaaacatcataaaacaccccaaaggaacaagcagaggagcaattt
caaacttaacttttacatcaaagtgatggaacagagtaatcattatcagt
aaaaatgttggagattagcaagatatggatgtatgtatggatggatgaat
ataagggaaattaccaccataaaatagttctaaaaaactaattctattca
tgtaaatgtaacaagtaaaacttagtgataataattatgtaattagtact
tgaagattatgttctttctatgtgtatttcaagactaaactaaagtttga
agtttttgcataaatttttatataggctatgattcactgattttaaaaca
caattatatttgttccatttttcttcacatctttgcagaaaatagatgaa
aaatggaagaaatgttaagtgaaaatatgtcaaatttaatatcacatatt
ctttctcataatgggatgctaaaactagcatcaatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_89908695_89909839
seq2: B6Ng01-016K06.b_43_1166 (reverse)

seq1  TGGCTGATATAATAGTTTATATGAGCAACTCCCAGAATTCTTCCAGAGAA  50
      |||||||| ||||||  |||||||||||||||| | || ||||||||| |
seq2  TGGCTGAT-TAATAG--TATATGAGCAACTCCC-GGATCCTTCCAGAG-A  45

seq1  CTCTTACAACTGTCTAACTTCGGCAAGTGGCTGGCTACAAAATTAACTCA  100
      ||||||||||||| |||| |||   ||| ||| ||||||||| |||||||
seq2  CTCTTACAACTGT-TAAC-TCG--CAGT-GCT-GCTACAAAA-TAACTCA  88

seq1  AATAAATCAGTTGCCTTCTTTTATACAAATGATAAACAAGCAGAGAAAGA  150
      ||| |||||||||||||||||||| |||||||||||| ||||||||||||
seq2  AAT-AATCAGTTGCCTTCTTTTAT-CAAATGATAAAC-AGCAGAGAAAGA  135

seq1  AATTAGGGAAACAACTGGACTCTATTCTAGCAAATGGAAGGAAGCTATAC  200
      |  ||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  A--TAGGGAAACAACTGGACTCTA-TCTAGCAAAT-GAAGGAAGCTATAC  181

seq1  ATGATACAATGCAGAGGGAATTTAAAGATTATTTTGGAGATAAGAAACTT  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGATACAATGCAGAGGGAATTT-AAGATTATTTTGGAGATAAGAAACTT  230

seq1  TGTTTGTATTTTGTTTGTATTTTGGAGATAAGAAACTGTTGTTTGCATTC  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTA-TTTGTTTGTATTTTGGAGATAAGAAACTGTTGTTTGCATTC  279

seq1  TTTTAAATGTCTGCTCCAAATCTCCTACTCATAATGACTTAACTGATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTCTGCTCCAAATCTCCTACTCATAATGACTTAACTGATGAT  329

seq1  ATAGCCCCATCTATACTGGGAGGAGGTCAATGCTGTCCAATTAGTGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCCATCTATACTGGGAGGAGGTCAATGCTGTCCAATTAGTGATAG  379

seq1  AATTCCTCAACTCTAATTATTCTACAAATGGTAAAAATTACCAGGCTCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTCAACTCTAATTATTCTACAAATGGTAAAAATTACCAGGCTCCG  429

seq1  GAGCTTGTATATGATAAAAGCAAAGTATAAAGTATTAGAGCATAGTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTATATGATAAAAGCAAAGTATAAAGTATTAGAGCATAGTTGAG  479

seq1  TATACTTTTATTTACCTTATCACACAGTTCATGACATCTATGGAAGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTATTTACCTTATCACACAGTTCATGACATCTATGGAAGTGGG  529

seq1  TTCCCTAAAGTACTCTTGCAGTGGATGCAGGTAGACCACCTTTAGGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAAGTACTCTTGCAGTGGATGCAGGTAGACCACCTTTAGGAGTT  579

seq1  TAGTTAGCACCACCTTTAGGAATCTAATATCCTAAGATTCTGGTACAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGCACCACCTTTAGGAATCTAATATCCTAAGATTCTGGTACAAGA  629

seq1  ATCCACTACCAACCCATTCATAGAAATGTTGGGAACATGTGGCATATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTACCAACCCATTCATAGAAATGTTGGGAACATGTGGCATATGTG  679

seq1  GAGGCAAGAAGGAATTTCCATGTGAAATTACTCAGAGGTGCCATCCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGAAGGAATTTCCATGTGAAATTACTCAGAGGTGCCATCCATAT  729

seq1  TTTTTTTGAGACAGTGTCTCTTAATGGGTCATGGGGCTTGTAAATTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAGACAGTGTCTCTTAATGGGTCATGGGGCTTGTAAATTTTCC  779

seq1  TAGGCTGACTGGACAGCAAATCTGATATAACCAACTGTCTCTGCCTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGACTGGACAGCAAATCTGATATAACCAACTGTCTCTGCCTCCTC  829

seq1  AGGACTAGGCTTAAAATTAAACACCTTCTCATCACATGGTTGCTGTGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGGCTTAAAATTAAACACCTTCTCATCACATGGTTGCTGTGGAT  879

seq1  TAAGTTTGGGTCCTCAATCTTGCATGACAACCTTTTAACCAAGTAACCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGGGTCCTCAATCTTGCATGACAACCTTTTAACCAAGTAACCCA  929

seq1  TCTTCCCAGCCCTGGTTTTGTTTGGGTTAGGTTGAGTTAGAATAGCTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAGCCCTGGTTTTGTTTGGGTTAGGTTGAGTTAGAATAGCTTGT  979

seq1  CTTTAGTTTACAATTATTAATATGTAAGATATATTTACAAAAGAATCATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTTACAATTATTAATATGTAAGATATATTTACAAAAGAATCATC  1029

seq1  TTTGAAAGCTAAAAGCTAAATGGATTTGCAGGTAAAACAACAATAAAGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGCTAAAAGCTAAATGGATTTGCAGGTAAAACAACAATAAAGGA  1079

seq1  GCCAATATCTTCTAAGTAGGAATGAAAAAATGTTTGAGAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATATCTTCTAAGTAGGAATGAAAAAATGTTTGAGAGAATTC  1124

seq1: chr2_89784241_89784977
seq2: B6Ng01-016K06.g_67_805

seq1  GAATTCAGTCACATTCCTTTTATTCTCCATCTGTGTGATATGGTTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCACATTCCTTTTATTCTCCATCTGTGTGATATGGTTAATTT  50

seq1  TTCTTAAATCCCTCCCCAAAAATATTTTATCTTCAGGAGAAAAGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAATCCCTCCCCAAAAATATTTTATCTTCAGGAGAAAAGAAAGGA  100

seq1  GAAATCATAAAATGATTAAATAGTCTCAAATTCTAATCTTATGAGTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATAAAATGATTAAATAGTCTCAAATTCTAATCTTATGAGTTCTA  150

seq1  CCAAGTCACAGATGAAACCTAGTCTTCCCAAAACTCTATAGGTCTAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCACAGATGAAACCTAGTCTTCCCAAAACTCTATAGGTCTAACCT  200

seq1  TCTCTTAGGTACTTTTTTTTTTTTTTTTTTTTTTTTGGTAATTGAAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGGTACTTTTTTTTTTTTTTTTTTTTTTTTGGTAATTGAAAGGG  250

seq1  ATTCTTAAACATCATAGAACACCCCAAAGGAACAAGCAGAGGAGCAATTT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTCTTAAACATCATAAAACACCCCAAAGGAACAAGCAGAGGAGCAATTT  300

seq1  CAAACTTAACTTTTACATCAAAGTGATGGAACAGAGTAATCATTATCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAACTTTTACATCAAAGTGATGGAACAGAGTAATCATTATCAGT  350

seq1  AAAAATGTTGGAGATTAGCAAGATATGGATGTATGTATGGATGGATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTGGAGATTAGCAAGATATGGATGTATGTATGGATGGATGAAT  400

seq1  ATAAGGTAAATTACCACCATAAAATAGTTCTAAAAAACTAATTCTATTCA  450
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGAAATTACCACCATAAAATAGTTCTAAAAAACTAATTCTATTCA  450

seq1  TGTAAATGTAACAAGTAAAACTTAGTGATAATAATTATGTAATTAGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGTAACAAGTAAAACTTAGTGATAATAATTATGTAATTAGTACT  500

seq1  TGAAGATTATGTTCTTTCTATGTGTATTTCAAGACTAAACTAAAGTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTATGTTCTTTCTATGTGTATTTCAAGACTAAACTAAAGTTTGA  550

seq1  AGTTTCTGCATAAATTTTTATATAGGCTATGATTCACTGATTTTAAAACA  600
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGCATAAATTTTTATATAGGCTATGATTCACTGATTTTAAAACA  600

seq1  CAATTATATTTGTTCCA-TTTTCTTCACATCTTTGCAGAAAATAGATG-A  648
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  CAATTATATTTGTTCCATTTTTCTTCACATCTTTGCAGAAAATAGATGAA  650

seq1  AAATGGAAGAAATGTTAAGTG-AAATATGTCAAATATCAATATCACATAT  697
      ||||||||||||||||||||| ||||||||||||| | ||||||||||||
seq2  AAATGGAAGAAATGTTAAGTGAAAATATGTCAAAT-TTAATATCACATAT  699

seq1  TCTTTCTCATAATGGGATGCTAAAACTAGCATCAATCTAA  737
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCATAATGGGATGCTAAAACTAGCATCAATCTAA  739