BAC Information

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BAC

Clone NameB6Ng01-017D22
Chromosome2 (Build37)
Map Location 84,545,070 - 84,546,142
singlet/doubletsinglet
Overlap geneZdhhc5
Upstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19
Downstream geneClp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017D22.bB6Ng01-017D22.g
ACCDH850984DH850985
length1,0521,223
definitionDH850984|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D22, 5' end.DH850985|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagtatgatacaagctgatttaaaaagaattctagtagtaaag
catggcacatgcgtttaatctcagcacttgggaggcaatcagatggatct
ttgagtaagaagagaacaacctggtccacataatgagaacctgcctcaaa
ccaagaacaggacctgcctccttctcccccacagaagaattttagcatct
tttcagacatgcttctttattttcatgtgtgtatcacacaactgaagtga
caagtagcaagcttaagagtttcctgtgaattgagaaagaattagaatct
aagactcattggttgagttttcctttctaggaatttgaactttttttttc
cttttaagtagtaggaagtgttagaaatgttagggaacaagatttcagaa
gagtgtctattgaaacccccacttccccttttacttggcattgaaaatag
gcataatgaatgggtgggcagaagaacctgttctacctggggtggtttct
gtctgggatcccatcagtgactcagcttctgagctgcagccactccctaa
acttcttgtgctctgtgattattacttacagagctaaggacaagtcctaa
cttttctcttaggtctggctacatctctttctatcaaaggcaaccgattc
aaataggccacttggagtggtcatcttagaatttagcagagtgctaaaac
aaggaaagcttttccttaagacaagtagagcatagggtgtggctgaagca
ggctttgctcacagattgttgaggtgaattgctccttcagctagagtcct
aaagctagaggctgcaagtctcagtctaggagatactgttcatgaagaaa
gtgaattatttgaatcacttagacattctgtcactgtggggacagtcttt
attttaacaatagataaactcaattttactattatgtatttcactgaata
tactgacagttaaaggtaatttgcagaacacaggagttggtgattatttg
tgaatgacactgaagaaaggtggggttaagatcaggagtgagccagtgtg
gt
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagcccccgccctgcgtagtgcgtcagca
atgcgcagagagatgcgcagagaggcagtgcgcagactcattcattccca
gagaggaacaaaggaaaatacaacaggcatttccggtctttgaaggagcc
gagggtgggcgtgtccacgctccggtagaatacttacaaattaaagaaat
tgccgagtcggtccgtaaatacggaaccaatgctaattttaccttggtgc
agttagacaggctcgccggcatggcactaactcctgctgactggcaaacg
gttgtaaaagccgctctccctagtatgggcaaatatatggaatggagagc
gctttggcacgaagctgcacaagcgcaggcccgagcaaacgcagctgctt
tgactccagagcagagagattggacttttgacttgttaacgggtcaggga
gcttattctgctgatcagacaaactaccattggggagcttatgcccagat
ttcttccacggctattagggcctggaaggcgctctctcgagcaggtgaaa
ccactggtcagttaacaaagataatccagggacctcaggaatccttctca
gattttgtggccagaatgacagaggcagcagagcgtatttttggagagtc
agagcaagctgcgcctctgatagaacagctaatctatgagcaagccacaa
aggagtgccgagcggccatagccccaagaaagaacaaaggcttacaagac
tggctcaggttctgtcgagagcttgggggacctcttcagcaatgcaggct
tagcggccgccatcctccaatctcagaatcggctcatgagcagaaatgat
cagaggacattgttttaattgcggaagtctgggcatttaagaaagattgc
agagcttcaggtaaacagggagggactctcaccttggctctaggtgggca
aggttatcatagagctgaacaggtacgtcgtggaggatattaaggggcaa
aagttctccctactggtagtcactcactggatgtgctaaaaaccggagat
ctaccgatcctcggctttcaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84545070_84546142
seq2: B6Ng01-017D22.b_45_1096 (reverse)

seq1  ACCACACCTGGCTCAACTCCTGATCTTTTAGACCCCACCTTTTCTTCAGT  50
      |||||| ||||||| ||||||||||||    |||||||| ||||||||||
seq2  ACCACA-CTGGCTC-ACTCCTGATCTT---AACCCCACC-TTTCTTCAGT  44

seq1  GTCATTTCCAACAAAATAAATCACCCAACTCCTTGTGTATCCTGCCAAAT  100
      ||||||     || ||  ||||| ||||||||   ||| | |||| ||  
seq2  GTCATT-----CACAAATAATCA-CCAACTCC---TGTGTTCTGCAAA--  83

seq1  TTTACCTTTAAACCTGTCAGTATATTTCAGTGAAATACATAATAGTAAAA  150
       ||||||||||  ||||||||||| |||||||||||||||||||||||||
seq2  -TTACCTTTAA--CTGTCAGTATA-TTCAGTGAAATACATAATAGTAAAA  129

seq1  TTGAGTTTATCTATTGTTAAAATAAAGACTGTCCCCACAGTGACAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTATCTATTGTTAAAATAAAGACTGTCCCCACAGTGACAGAATG  179

seq1  TCTAAGTGATTCAAATAATTCACCTTCTTCATGAACAGTATCTCCTAGAC  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTAAGTGATTCAAATAATTCACTTTCTTCATGAACAGTATCTCCTAGAC  229

seq1  TGAGACTTGCAGCCTCTAGCTTTAGGACTCTAGCTGAAGGAGCAATTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTGCAGCCTCTAGCTTTAGGACTCTAGCTGAAGGAGCAATTCAC  279

seq1  CTCAACAATCTGTGAGCAAAGCCTGCTTCAGCCACACCCTATGCTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAATCTGTGAGCAAAGCCTGCTTCAGCCACACCCTATGCTCTACT  329

seq1  TGTCTTAAGGAAAAGCTTTCCTTGTTTTAGCACTCTGCTAAATTCTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAGGAAAAGCTTTCCTTGTTTTAGCACTCTGCTAAATTCTAAGA  379

seq1  TGACCACTCCAAGTGGCCTATTTGAATCGGTTGCCTTTGATAGAAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACTCCAAGTGGCCTATTTGAATCGGTTGCCTTTGATAGAAAGAGA  429

seq1  TGTAGCCAGACCTAAGAGAAAAGTTAGGACTTGTCCTTAGCTCTGTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCAGACCTAAGAGAAAAGTTAGGACTTGTCCTTAGCTCTGTAAGT  479

seq1  AATAATCACAGAGCACAAGAAGTTTAGGGAGTGGCTGCAGCTCAGAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCACAGAGCACAAGAAGTTTAGGGAGTGGCTGCAGCTCAGAAGCT  529

seq1  GAGTCACTGATGGGATCCCAGACAGAAACCACCCCAGGTAGAACAGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTGATGGGATCCCAGACAGAAACCACCCCAGGTAGAACAGGTTC  579

seq1  TTCTGCCCACCCATTCATTATGCCTATTTTCAATGCCAAGTAAAAGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCACCCATTCATTATGCCTATTTTCAATGCCAAGTAAAAGGGGA  629

seq1  AGTGGGGGTTTCAATAGACACTCTTCTGAAATCTTGTTCCCTAACATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGTTTCAATAGACACTCTTCTGAAATCTTGTTCCCTAACATTTC  679

seq1  TAACACTTCCTACTACTTAAAAGGAAAAAAAAAGTTCAAATTCCTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTCCTACTACTTAAAAGGAAAAAAAAAGTTCAAATTCCTAGAAA  729

seq1  GGAAAACTCAACCAATGAGTCTTAGATTCTAATTCTTTCTCAATTCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTCAACCAATGAGTCTTAGATTCTAATTCTTTCTCAATTCACAG  779

seq1  GAAACTCTTAAGCTTGCTACTTGTCACTTCAGTTGTGTGATACACACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTTAAGCTTGCTACTTGTCACTTCAGTTGTGTGATACACACATG  829

seq1  AAAATAAAGAAGCATGTCTGAAAAGATGCTAAAATTCTTCTGTGGGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAAGCATGTCTGAAAAGATGCTAAAATTCTTCTGTGGGGGAG  879

seq1  AAGGAGGCAGGTCCTGTTCTTGGTTTGAGGCAGGTTCTCATTATGTGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCAGGTCCTGTTCTTGGTTTGAGGCAGGTTCTCATTATGTGGAC  929

seq1  CAGGTTGTTCTCTTCTTACTCAAAGATCCATCTGATTGCCTCCCAAGTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTTCTCTTCTTACTCAAAGATCCATCTGATTGCCTCCCAAGTGC  979

seq1  TGAGATTAAACGCATGTGCCATGCTTTACTACTAGAATTCTTTTTAAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAAACGCATGTGCCATGCTTTACTACTAGAATTCTTTTTAAATC  1029

seq1  AGCTTGTATCATACTGAGAATTC  1073
      |||||||||||||||||||||||
seq2  AGCTTGTATCATACTGAGAATTC  1052