BAC Information

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BAC

Clone NameB6Ng01-017N20
Chromosome17 (Build37)2 (Build37)
Map Location 78,011,444 - 78,012,354132,091,371 - 132,091,425
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG624348, LOC545234
Downstream geneLOC100043887, LOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017N20.bB6Ng01-017N20.g
ACCDH851419DH851420
length910970
definitionDH851419|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N20, 5' end.DH851420|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,011,444 - 78,012,354)(132,091,371 - 132,091,425)
sequence
gaattctgttcactagagtaagagcaaaaaaattaatttttcatcaagcc
tttgaattccatgaacaaactctattataatatctatgaatcttataaac
ttaaagatggtgtgtgtgtttgtgtatgtgataatatttaaccattgaaa
tggaaataaatgaataaaacaattgaaatggatgaattttaatagccagc
agattttaaaactatcagattgttttaaacgctttaaagtaggtctatat
tctttcctctgactttccaaagtcttctaaagtgcaaagtaaatttaatt
atctctgtacctaattctgtcttgacagtattgataggcattttcctatt
aaggatatagtgtcacctttcttgatttggaggctgctgcaggatctaaa
cctgaactacatagtgacccagagctgtctcactgtgcatcgttgggaaa
caagtaatcttaggtcagtttcttctgtgactgtgattctttatctatac
acttaaaattcaattggattttcttgtattatgttacatctgttgcatct
tacaaatatttatcactcaaattgagtttgaagaatctcagagaggttat
aggtaaatgttttcaaaactctctatatagttaattgagtacagggttgg
ttttttaaactctttgaatattacatgtctttttggatattaaaatagac
ctgaaatagtattatttctaagagccaagatatagaatcaatccaggtat
gcactaaagcatgaatgtggtgtatgtttgcaatgaagtatggtgtagct
ctacaagtaagggattccatcaattttcaggtctgtcatggaaggtagag
aactaatctatacactcatatggagaatcaaaaaagctgaaggcattgaa
tgagggacta
gaattctgtcagctgataaacaacttcagcaaactggccagatataaaat
tagctcaaacaaatcagtagacttcttatactcaaaggataaacaagctg
agaaagaatttagggaaatgacacccttcccaacagtcacaaacaatata
aagtatcttagtgtaactctaagctaacaaatgaaagatctatatgacaa
aacttcaagactctgaagaaagaaattgaagaatgcctcagaagatgaaa
agatctcctatgctcaagaattggaaggattaacctagcaaaagtggcca
tattgccaaaaccaatctacagattcaatgtaatccccatcaaaattcca
actcagttcttcatagagctagaaagaacaattctccaatacacctggaa
taacaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaaaaaagccaaaataccaaaaactattcttgt
ggataaaagaacttctggggggaatcagcatcccggacctcaagctgtgc
tacagagcaattgtgataaaactgtatgatatcagtacagtaacagacag
gtagatcagtggaatagaactgaagacccagaaatgaacccatgaaccta
tggtcacataatctttgacaaaggacctaaaaccattcagtggaaaaatg
acagcattttcaacaaatggtgctggttcttttggctactagcatgcaga
agaatggaaatcgatccattcttatctccttgtacaaagttaaagtccaa
gtggatcaaggacctttcatgtaaaaccagatacactgaaactaatagaa
aagaaagtgggggaaaagcctcaatcacgtgggccagagaagaaaatatc
ctgatcagaataccaatagcttatgccctaagatcaagaactgaaaaatg
gtacctcataaaattacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78011444_78012354
seq2: B6Ng01-017N20.b_50_959 (reverse)

seq1  TAGTCCCTCCTTCTATGCCTTCAGCTTTTTTGGTTCTCCATATGAGTTGT  50
      ||||||||| ||| |||||||||||||||||| ||||||||||||| |||
seq2  TAGTCCCTCATTCAATGCCTTCAGCTTTTTTGATTCTCCATATGAG-TGT  49

seq1  CTAGCTTAGTTCTCTACCTTCCATGACAGAACTG-AAATTGATGGAATCC  99
       ||| ||||||||||||||||||||||||| ||| |||||||||||||||
seq2  ATAGATTAGTTCTCTACCTTCCATGACAGACCTGAAAATTGATGGAATCC  99

seq1  CTTACTTTGTAGAGCTACACCATACTTCATTGCAAACATACACCACATTC  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAC-TTGTAGAGCTACACCATACTTCATTGCAAACATACACCACATTC  148

seq1  ATGCTTTAGTGCATACCTGGATTGATTCTATATCTTGGCTCTTAGAAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAGTGCATACCTGGATTGATTCTATATCTTGGCTCTTAGAAATA  198

seq1  ATACTATTTCAGGTCTATTTTAATATCCAAAAAGACATGTAATATTCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTTCAGGTCTATTTTAATATCCAAAAAGACATGTAATATTCAAA  248

seq1  GAGTTTAAAAAACCAACCCTGTACTCAATTAACTATATAGAGAGTTTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAAAAAACCAACCCTGTACTCAATTAACTATATAGAGAGTTTTGA  298

seq1  AAACATTTACCTATAACCTCTCTGAGATTCTTCAAACTCAATTTGAGTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTACCTATAACCTCTCTGAGATTCTTCAAACTCAATTTGAGTGA  348

seq1  TAAATATTTGTAAGATGCAACAGATGTAACATAATACAAGAAAATCCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTGTAAGATGCAACAGATGTAACATAATACAAGAAAATCCAAT  398

seq1  TGAATTTTAAGTGTATAGATAAAGAATCACAGTCACAGAAGAAACTGACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTAAGTGTATAGATAAAGAATCACAGTCACAGAAGAAACTGACC  448

seq1  TAAGATTACTTGTTTCCCAACGATGCACAGTGAGACAGCTCTGGGTCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTACTTGTTTCCCAACGATGCACAGTGAGACAGCTCTGGGTCACT  498

seq1  ATGTAGTTCAGGTTTAGATCCTGCAGCAGCCTCCAAATCAAGAAAGGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTCAGGTTTAGATCCTGCAGCAGCCTCCAAATCAAGAAAGGTGA  548

seq1  CACTATATCCTTAATAGGAAAATGCCTATCAATACTGTCAAGACAGAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATCCTTAATAGGAAAATGCCTATCAATACTGTCAAGACAGAATT  598

seq1  AGGTACAGAGATAATTAAATTTACTTTGCACTTTAGAAGACTTTGGAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAGAGATAATTAAATTTACTTTGCACTTTAGAAGACTTTGGAAAG  648

seq1  TCAGAGGAAAGAATATAGACCTACTTTAAAGCGTTTAAAACAATCTGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAAAGAATATAGACCTACTTTAAAGCGTTTAAAACAATCTGATA  698

seq1  GTTTTAAAATCTGCTGGCTATTAAAATTCATCCATTTCAATTGTTTTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAATCTGCTGGCTATTAAAATTCATCCATTTCAATTGTTTTATT  748

seq1  CATTTATTTCCATTTCAATGGTTAAATATTATCACATACACAAACACACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTCCATTTCAATGGTTAAATATTATCACATACACAAACACACA  798

seq1  CACCATCTTTAAGTTTATAAGATTCATAGATATTATAATAGAGTTTGTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTTTAAGTTTATAAGATTCATAGATATTATAATAGAGTTTGTTC  848

seq1  ATGGAATTCAAAGGCTTGATGAAAAATTAATTTTTTTGCTCTTACTCTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTCAAAGGCTTGATGAAAAATTAATTTTTTTGCTCTTACTCTAG  898

seq1  TGAACAGAATTC  911
      ||||||||||||
seq2  TGAACAGAATTC  910

seq1: chr2_132091371_132091425
seq2: B6Ng01-017N20.g_472_538 (reverse)

seq1  ------------TTTTCTTTCTTTCTTTCTTTCTCTCTTTCTTTCTTTCT  38
                   ||||||||||||||||||||| |||||||||||||||
seq2  TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  50

seq1  TTCTTTCTTTTTTTTTT  55
      |||||||||||||||||
seq2  TTCTTTCTTTTTTTTTT  67