BAC Information

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BAC

Clone NameB6Ng01-019B24
Chromosome2 (Build37)
Map Location 164,683,381 - 164,822,890
singlet/doubletdoublet
Overlap geneF730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5
Upstream geneKcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp
Downstream geneNcoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019B24.bB6Ng01-019B24.g
ACCDH852310DH852311
length1,095892
definitionDH852310|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B24, 5' end.DH852311|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,821,798 - 164,822,890)(164,683,381 - 164,684,273)
sequence
gaattccatgtctaagagctggttaaggagacagcctgcgccttctctca
gcctgcgtccctgtcctagggttttcatcccaggctagaggacccacgta
atggtgccgtccacctccctcttccctttaacttaaatccaggatacagt
tttcatccccattgcggttgcggggaggcccgggcatgttgagcaaaact
agcttggcatcccgagatttattcacgatgacctcgttcagccgcacagc
tgtgtgcatgcgccgtacattggactggttcctgcagaagaaaggagagg
aagtgcggatgttagcccaggccaagaagagttaggtcggatcgccctcc
cagcctgagtctggctgctcggccgggtgcttgccagcctgggacctccc
ccaaccccataacactccaagctgggcaatggccagggacaccccttgag
ggttccgtggaggagggaccctagaaacctaggagagacgatggagctgg
tggcacacttacaagttttcccactcccttcaggaaacacaaagagaagc
aaagagagaaagaaaaagagaggggtcaggaaaagaggcaccccgctaag
ccagccaccatcttgtccaggataagcagtgcccccccacccaccttcac
ctcttcaacacctgcacttgggagtgcatcctgacctggaaccatcatgc
ccggccctgtaagtctcgaactggggaaaccaaggcaagtaagtcctgcc
cttggtcatcaaattgccatatcacgaccttcctgcccagttattctgcc
atattaaacaccttttagcccaccctccccccccccaacccccgccgccc
ccatgcagccccagtcccgtacggcttcatgctgaagaagtccttgatgc
cctcggaggagacgggactggggccttttattcttctctgccactgacta
tccttgtccaggtagatgcacctctgggtctgtctcctcttctccttcgg
cttcctccccctggagtatggcgagctgcttagggcagctgggagcactc
ctgatcatggatccacctgctccctgaggtaggatgacggtcagc
gaattccaatcacacagcaattcctgcacgctcctaaacaaactccttca
cttggctgcggagcctcagtttcctcacccagcaccgagtgcctccttat
gggaactcccactcggcttccacgctaggccagcgaaagccaatgcccta
cggtcattcccctttcttttctctcacaaccgtctcccgctggctttgtt
atgagaccccaacctacttgattggcttttagggccccagggaccttccc
ctattggaaaagcgatcatcccagagggaggtttggccttcctgaggaac
tctgaattctttagtgaggacttggaggtggctgctttgcacagtccccc
tcaccccgtgcaccgccccgcacagttccgagcatcacagtggaaaacag
acagtagatgcttgctttctttttgtagccatgcgggcgaaatggaaagg
gggaactgataaagatgtttgctgagcatatacttaacactcagcactca
gccagctcagctgacccaatagtcttgttttgtccaggaccttcctggat
tcagaactacccacgggaatccactcagtcccaagcgaaccagaatggct
aatcactctagatctggttttaccttcttatagtctgtgaggctggctct
ctggcaggaaactggaggttgaggttgagacaattctgtgactgtaaatg
cagaattcaaggattgttccaaaacagtgtgaggtaggattggtagctca
agaagccttctctctgagggaccagcgcttacatcctaggatgtcagcct
caggacacttattgtataaatagctcagcgattttctccttctaaatcgt
atctaaaatagtatatattaaaggtttggggagggagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164821798_164822890
seq2: B6Ng01-019B24.b_42_1136 (reverse)

seq1  GCTGACCTGTCATCCCTACCTCA-GGTGCAGCT-GATCCATGACCA-GAG  47
      ||||||| ||||| ||||||||| || |||| | ||||||||| || |||
seq2  GCTGACC-GTCAT-CCTACCTCAGGGAGCAGGTGGATCCATGATCAGGAG  48

seq1  TGCTCCCAGCTGCCCT-AGCAGCTCGCCAT-CTCCA-GGGGAGGAGCCCG  94
      |||||||||||||||| ||||||||||||| ||||| ||||||||  |||
seq2  TGCTCCCAGCTGCCCTAAGCAGCTCGCCATACTCCAGGGGGAGGAAGCCG  98

seq1  AGGGGGAGAGGGAGACAGACCCAGAGGTGCATCTTACCTGGACCAAGGAT  144
      | || ||   ||||||||||||||||||||||| |||||||| |||||||
seq2  AAGGAGAAGAGGAGACAGACCCAGAGGTGCATC-TACCTGGA-CAAGGAT  146

seq1  AAGTCAGTGGCAGAGAAGAAT-AAAGGCCCCAGTCCCGTCTCCTCCGAGG  193
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -AGTCAGTGGCAGAGAAGAATAAAAGGCCCCAGTCCCGTCTCCTCCGAGG  195

seq1  GCATCAAGGACTTCTTCAGCATGAAGCCGTACGGGACTGGGGCTGCATGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAGGACTTCTTCAGCATGAAGCCGTACGGGACTGGGGCTGCATGG  245

seq1  GGGCGGCGGGGGTTGGGGGGGGGGAGGGTGGGCCTAAAGGTGTTTAATAT  293
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GGGCGGCGGGGGTTGGGGGGGGGGAGGGTGGGCTAAAAGGTGTTTAATAT  295

seq1  GGCAGAATAACTGGGCAGGAAGGTCGTGATATGGCAATTTGATGACCAAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATAACTGGGCAGGAAGGTCGTGATATGGCAATTTGATGACCAAG  345

seq1  GGCAGGACTTACTTGCCTTGGTTTCCCCAGTTCGAGACTTACAGGGCCGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGACTTACTTGCCTTGGTTTCCCCAGTTCGAGACTTACAGGGCCGG  395

seq1  GCATGATGGTTCCAGGTCAGGATGCACTCCCAAGTGCAGGTGTTGAAGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATGGTTCCAGGTCAGGATGCACTCCCAAGTGCAGGTGTTGAAGAG  445

seq1  GTGAAGGTGGGTGGGGGGGCACTGCTTATCCTGGACAAGATGGTGGCTGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTGGGTGGGGGGGCACTGCTTATCCTGGACAAGATGGTGGCTGG  495

seq1  CTTAGCGGGGTGCCTCTTTTCCTGACCCCTCTCTTTTTCTTTCTCTCTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGGGGTGCCTCTTTTCCTGACCCCTCTCTTTTTCTTTCTCTCTTT  545

seq1  GCTTCTCTTTGTGTTTCCTGAAGGGAGTGGGAAAACTTGTAAGTGTGCCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTTTGTGTTTCCTGAAGGGAGTGGGAAAACTTGTAAGTGTGCCA  595

seq1  CCAGCTCCATCGTCTCTCCTAGGTTTCTAGGGTCCCTCCTCCACGGAACC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCATCGTCTCTCCTAGGTTTCTAGGGTCCCTCCTCCACGGAACC  645

seq1  CTCAAGGGGTGTCCCTGGCCATTGCCCAGCTTGGAGTGTTATGGGGTTGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGGGTGTCCCTGGCCATTGCCCAGCTTGGAGTGTTATGGGGTTGG  695

seq1  GGGAGGTCCCAGGCTGGCAAGCACCCGGCCGAGCAGCCAGACTCAGGCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTCCCAGGCTGGCAAGCACCCGGCCGAGCAGCCAGACTCAGGCTG  745

seq1  GGAGGGCGATCCGACCTAACTCTTCTTGGCCTGGGCTAACATCCGCACTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCGATCCGACCTAACTCTTCTTGGCCTGGGCTAACATCCGCACTT  795

seq1  CCTCTCCTTTCTTCTGCAGGAACCAGTCCAATGTACGGCGCATGCACACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTTTCTTCTGCAGGAACCAGTCCAATGTACGGCGCATGCACACA  845

seq1  GCTGTGCGGCTGAACGAGGTCATCGTGAATAAATCTCGGGATGCCAAGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCGGCTGAACGAGGTCATCGTGAATAAATCTCGGGATGCCAAGCT  895

seq1  AGTTTTGCTCAACATGCCCGGGCCTCCCCGCAACCGCAATGGGGATGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCTCAACATGCCCGGGCCTCCCCGCAACCGCAATGGGGATGAAA  945

seq1  ACTGTATCCTGGATTTAAGTTAAAGGGAAGAGGGAGGTGGACGGCACCAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCCTGGATTTAAGTTAAAGGGAAGAGGGAGGTGGACGGCACCAT  995

seq1  TACGTGGGTCCTCTAGCCTGGGATGAAAACCCTAGGACAGGGACGCAGGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGGTCCTCTAGCCTGGGATGAAAACCCTAGGACAGGGACGCAGGC  1045

seq1  TGAGAGAAGGCGCAGGCTGTCTCCTTAACCAGCTCTTAGACATGGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAGGCGCAGGCTGTCTCCTTAACCAGCTCTTAGACATGGAATTC  1095

seq1: chr2_164683381_164684273
seq2: B6Ng01-019B24.g_66_957

seq1  GAATTCCAATCACACAGCAATTCCTGCACGCTCCTAAACAAACTCCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCACACAGCAATTCCTGCACGCTCCTAAACAAACTCCTTCA  50

seq1  CTTGGCTGCGGAGCCTCAGTTTCCTCACCCAGCACCGAGTGCCTCCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGCGGAGCCTCAGTTTCCTCACCCAGCACCGAGTGCCTCCTTAT  100

seq1  GGGAACTCCCACTCGGCTTCCACGCTAGGCCAGCGAAAGCCAATGCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCCCACTCGGCTTCCACGCTAGGCCAGCGAAAGCCAATGCCCTA  150

seq1  CGGTCATTCCCCTTTCTTTTCTCTCACAACCGTCTCCCGCTGGCTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCATTCCCCTTTCTTTTCTCTCACAACCGTCTCCCGCTGGCTTTGTT  200

seq1  ATGAGACCCCAACCTACTTGATTGGCTTTTAGGGCCCCAGGGACCTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCCCAACCTACTTGATTGGCTTTTAGGGCCCCAGGGACCTTCCC  250

seq1  CTATTGGAAAAGCGATCATCCCAGAGGGAGGTTTGGCCTTCCTGAGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAAAAGCGATCATCCCAGAGGGAGGTTTGGCCTTCCTGAGGAAC  300

seq1  TCTGAATTCTTTAGTGAGGACTTGGAGGTGGCTGCTTTGCACAGTCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTCTTTAGTGAGGACTTGGAGGTGGCTGCTTTGCACAGTCCCCC  350

seq1  TCACCCCGTGCACCGCCCCGCACAGTTCCGAGCATCACAGTGGAAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCGTGCACCGCCCCGCACAGTTCCGAGCATCACAGTGGAAAACAG  400

seq1  ACAGTAGATGCTTGCTTTCTTTTTGTAGCCATGCGGGCGAAATGGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGATGCTTGCTTTCTTTTTGTAGCCATGCGGGCGAAATGGAAAGG  450

seq1  GGGAACTGATAAAGATGTTTGCTGAGCATATACTTAACACTCAGCACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGATAAAGATGTTTGCTGAGCATATACTTAACACTCAGCACTCA  500

seq1  GCCAGCTCAGCTGACCCAATAGTCTTGTTTTGTCCAGGACCTTCCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCAGCTGACCCAATAGTCTTGTTTTGTCCAGGACCTTCCTGGAT  550

seq1  TCAGAACTACCCACGGGAATCCACTCAGTCCCAAGCGAACCAGAATGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTACCCACGGGAATCCACTCAGTCCCAAGCGAACCAGAATGGCT  600

seq1  AATCACTCTAGATCTGGTTTTACCTTCTTATAGTCTGTGAGGCTGGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTCTAGATCTGGTTTTACCTTCTTATAGTCTGTGAGGCTGGCTCT  650

seq1  CTGGCAGGAAACTGGAGGTTGAGGTTGAGACAATTCTGTGACTGTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGAAACTGGAGGTTGAGGTTGAGACAATTCTGTGACTGTAAATG  700

seq1  CAGAATTCAAGGATTGTTCCAAAACAGTGTGAGGTAGGATTGGTAGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCAAGGATTGTTCCAAAACAGTGTGAGGTAGGATTGGTAGCTCA  750

seq1  AGAAGCCTTCTCTCTGAGGGACCAGCGCTTACATCCTAGGATGTCAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTTCTCTCTGAGGGACCAGCGCTTACATCCTAGGATGTCAGCCT  800

seq1  CAGGACACTTATTGTATAAATAGCTCAGGCGATTTTCTCCTTCTAAATCG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGGACACTTATTGTATAAATAGCTCA-GCGATTTTCTCCTTCTAAATCG  849

seq1  TATCTAAAATAGTATATATTAAAGGTTTGGGGAGGGAGTGGGG  893
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAATAGTATATATTAAAGGTTTGGGGAGGGAGTGGGG  892