BAC Information

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BAC

Clone NameB6Ng01-019N24
Chromosome2 (Build37)
Map Location 142,776,348 - 142,776,810
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019N24.bB6Ng01-019N24.g
ACCDH852834DH852835
length1,204970
definitionDH852834|Mus musculus domesticus DNA, BAC clone: B6Ng01-019N24, 5' end.DH852835|Mus musculus domesticus DNA, BAC clone: B6Ng01-019N24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttacaaccccatgggacaaggaatagttgaacgtgctcatcgc
accttaaagaattggctctttaagacaaaagaggggcagctatatccccc
aaggtcaccaaaggcccaccttgccttcactttatttgtcctaaatttct
tgcacaccgatatcaagggccagtctgcagcggatcgccactggcatcca
gttacttattcttatgcattggtaaaatggaaggaccccctgactaatga
atagaagggtccagatccagttctaatttggggtaggggctcagtttgtg
ttttttcacgagatgaagatggagcgcggtggctgccagagagattaatt
cgtcagatgaacacagattctgactcttctggtaagtatcattctaaaga
ctaaaattccttttgtgcttaaaattcagctgagagcaacagctctcaaa
gctgttctccagctactctctgagccagctcccgacaggaggccagagac
tagcctcagctttacaatttgcatttgaataaagtacctagacttcccga
aagaagttctgctttcctactttctcactgtctttcaagattttgtcttt
caagcaggtaaatcaacattctcgaggcggaccagcagatgtgcatcccc
gcccccctagaacacacaggtggcagctgttacccccagtctcaggacat
ttccagcacgtggttttcagtctaagttaaaaatttaggtttacctagag
ggctagaagagtagatatttctacattaataaagattggtttttattttt
tgatagacaggcttagccccttagctgacctctggcttttcacccttgct
gttactgcaaggtgtccttagctcaataggctgtagaaaaaacaggatga
agagaaacgacttccagctcctattttagccacaaatcgtgtgttactaa
cgacataattcttgcttaggctttgctaattctgaggtgataattctcct
tagagctgcaccagcactcagaactgtgcatactggtttgtgattgtaca
attcagtatggcaccgcttggtgcgaaagtactgcaaaaaaagttcgctt
gaccattttgatctgtggaataaccgtttaagagtgtacattgtaaaaaa
attcgactactgctcgaagacgagccaagtggtggtttaccccagaggat
ctcg
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtctttagccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtatctctggttttatgtgaagttccttga
tccacttagatttgagctcagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtccttcttccactggatggttttagctcccttgttgccatgaattc
ctgatctttccagaacttttatcatgaatgggtattggatcatgaatggg
tattggaccataggtgtgtgggttcatttctgggtcttcaattttattcc
attggtctacttctctgtctctataccagtaccatgcaggtttttttttt
gttttgttttgttttgtttttatcacaattgctctgtattaaagctttag
gtcaggcatggtgattccaccagaggttattttatccttgagaagagttt
ttgctatcctaggtctttttgttatcccagatgaatttggaaattgctcc
ttctaattcgttgaagaattgagttgggattttgatggggattgcattga
atctgtagattgctcttggcaagatagccatttttacaatgttgatcctg
caatccatgagctgggagatcttctcatcttctgagatcttcttaattcc
tttttcagaagcctgaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776348_142776810
seq2: B6Ng01-019N24.g_497_1038 (reverse)

seq1  AACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAA  50
      ||||||| |  |||||| |||| |||| |||||||||||||||||||  |
seq2  AACTTCAGGCTTCTGAA-AAAGGAATT-AAGAAGATCTCAGAAGATGAGA  48

seq1  GGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTA  100
       ||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  AGATCTCCCA-GCTCATGGATT-GCAGGATCAACATTGTAAAAATGGCTA  96

seq1  TCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCA  150
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  TCTTGCCAAGAGCAATCTACAGATTCAATGCAATCCCCATCAAAATCCCA  146

seq1  ACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAA  200
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  ACTCAATTCTTCAACGAATTAGAAGGAGCAATTTCCAAATTCATCTGGGA  196

seq1  TAACAAAAA-ACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACC  249
      ||||||||| ||||||||||||||||| ||||||||||||||||| ||||
seq2  TAACAAAAAGACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAATAACC  246

seq1  TCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGT  299
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTGGTGGAATCACCATGCCTGACCTAAAGCTTTAATACAGAGCAATTGT  296

seq1  GATAAAAA---------------------------CTGCATGGTACTGGT  322
      ||||||||                           |||||||||||||||
seq2  GATAAAAACAAAACAAAACAAAACAAAAAAAAAACCTGCATGGTACTGGT  346

seq1  ATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATG  372
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  ATAGAGACAGAGAAGTAGACCAATGGAATAAAATTGAAGACCCAGAAATG  396

seq1  AACCCACACACCTATGGTC----------ACTTGATC-------------  399
      |||||||||||||||||||           | |||||             
seq2  AACCCACACACCTATGGTCCAATACCCATTCATGATCCAATACCCATTCA  446

seq1  ---------------------------TT-----CGACAAGGGAGCTAAA  417
                                 ||     | ||||||||||||||
seq2  TGATAAAAGTTCTGGAAAGATCAGGAATTCATGGCAACAAGGGAGCTAAA  496

seq1  ACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  463
      ||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  ACCATCCAGTGGAAGAAGGACAGCATTTTCAACAATTGGTGCTGGC  542