BAC Information

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BAC

Clone NameB6Ng01-020D05
Chromosome2 (Build37)
Map Location 31,603,202 - 31,711,789
singlet/doubletdoublet
Overlap geneAbl1, BC094274, Fibcd1
Upstream geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2
Downstream geneLamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020D05.bB6Ng01-020D05.g
ACCDH853065DH853066
length1,1191,023
definitionDH853065|Mus musculus domesticus DNA, BAC clone: B6Ng01-020D05, 5' end.DH853066|Mus musculus domesticus DNA, BAC clone: B6Ng01-020D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,710,654 - 31,711,789)(31,603,202 - 31,604,246)
sequence
gaattcccacaggccagaggtctgacaacacaggctgcgctgggctgtgg
taaatattgatgaaatgagctgctgttttcctgtctaagccccaggggcc
catgctgacacaccctccctcggcctgtgctacgcaggcacagatgccta
aaagcatgaaggctgggaagctcagctctactgtgcctacccagcatgca
ccaagccaaggttctccatctgcagcactacacaacccgagtgctgtggc
tcgagcctgtagtccaagcacttgagaaacagaagcaagaggatcgccag
ttcaagaccatccttggccacgtagcaagttcaaggccagcctgggttac
ccaagaccccatctcaaaacaaataaactaaacacagttttgaaagaagt
gctctaagtcagtagcagaagtgggttttagatccaacagtgggtgacct
ttatacatttaaaaaccacttgcctccgcgtgtgcattcgtcagctatgg
ctgctgtagtgctgtgtaacaaccatctctaacgaaacagcatctatctc
tctgactggtagctcagctgggaactgtagcttctcagagccctgagagg
aaggcaggagtacctcttacggcctgtgctgtcctggctccagctcctcc
tttccctgcttcatcccttacagccataatgggctctcttctgtatgccc
acaatgatggactatcttctctaaaactgggagccgaaacgtatctttgg
gttcttatgttgctctaggtcacaccagcaataggacggagtgacacaat
gctctgtgcccccacccccaccctgtctgctgtctgccaggcctccctcc
tggctccatcctagcttcaccctgcacttgttcatgggtccattttaatc
gccccagtctgaactgttccatttcctgcagtctcagaaactctttagtg
gctgcccagctgcccttagagccacgcaaagtgtctaacaatcaagatgt
cactggctgctgcttcagctacctctgctgcatgttcctagggcttccaa
tttgactgctaagagtctcatgggttccccgcctttattacacagtctct
tttctgttttgactctctc
gaattcaatgggtagaacaggctagcctccaactcagagagacctgcctg
cctttactctcgagtgcttgaataaaggtgtgcacgaccacacccagctt
tatctcaagtttttaacagactatgtgtattggagtgtgtacatgcatgc
agacgccagagttaaccattgctccctccattgctcttagtttttgagac
agactctttccctgaacctagagctcaccagtgagttctcaagataatcc
tgtctccatctccccaggaaaaactcctttccaaagagactgtgcatctc
cattgtcctgcatgattgttagcactgtgtttgtgactgtagcccgtgga
gtggggtgagatgggaacttgctgcagtggacatgaggaactcactgagt
gaatatagtgggagtcccatagaaccagactaggctggccttaaacctgc
ctgtttccttagtgctttgattaaaggtgtgtgccaccgttgcctggcct
gagcatctttttgggtgcttaccagccatttgttttgattcttggtgaca
agccaatgacccttttgccagttttaagccagtttgaacgtgttctaact
gggcaggaagggttctctgcattttgggatgcagctatgcctcagatcca
tggtaggatacatggcttttactttcctcacactgataccatttctcccc
tgtgttctttggagagatttatcatatgtttggactatttggagaattta
ggctttggagtaccaccatccacactgcaagctagagacccaggaaagct
ggtgggtttctagagacttattaccctgggcagtgtgagatgctaatgac
ttgaactggaacacggaaaacagaagatctgtctgtcaagaatcagactc
atgggctgagagaggctcagtcgtaagagcatactgctcttcagaggtcc
tgagtcattccagcaatcactggtggctacaccttcttaaagagtcggac
cccctctttcgggggtctgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_31710654_31711789
seq2: B6Ng01-020D05.b_44_1162 (reverse)

seq1  GAGAGAGGAGGTCAAAGACAGAAAGAAGACTGTGTGATACAAGGCGGGGG  50
      ||||||    |||||| |||||||  ||||||||| ||| ||||||||| 
seq2  GAGAGA----GTCAAA-ACAGAAAAGAGACTGTGTAATA-AAGGCGGGGA  44

seq1  ACCCATGTAGACTTCATAGCAGTCAGAATGGGAAGCCCTAGGGACATGGC  100
      ||||||| |||| || ||||||||| ||| |||||||||||| |||||  
seq2  ACCCATG-AGAC-TCTTAGCAGTCA-AATTGGAAGCCCTAGGAACATG--  89

seq1  AAGCAGAGGTAGCTGAAGCAGCAGCCAGTGGACATCTTTGATGGTTAGAC  150
       |||||||||||||||||||||||||||| |||||| ||||| |||||||
seq2  CAGCAGAGGTAGCTGAAGCAGCAGCCAGT-GACATC-TTGATTGTTAGAC  137

seq1  ACTTTGCGTGGGCTCTAAGGGCAGCTGGGGCAGGCCACTAAAGAGGTTCC  200
      ||||||||| |||||||||||||||| ||||| ||||||||||| ||| |
seq2  ACTTTGCGT-GGCTCTAAGGGCAGCT-GGGCA-GCCACTAAAGA-GTTTC  183

seq1  TGGGACTGCAGGAAATGGAACAGTTCAGACTGGGGCGATTAAAATGGACC  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGCAGGAAATGGAACAGTTCAGACTGGGGCGATTAAAATGGACC  233

seq1  CATGAACAAGTGCAGGGTGGAGCTAGGATGGAGCCAGGAGGGAGGCCTGG  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATGAACAAGTGCAGGGTGAAGCTAGGATGGAGCCAGGAGGGAGGCCTGG  283

seq1  CAGACAGCAGACAGGGTGGGGGTGGGGGCACAGAGCATTGTGTCACTCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCAGACAGGGTGGGGGTGGGGGCACAGAGCATTGTGTCACTCCG  333

seq1  TCCTATTGCTGGTGTGACCTAGAGCAACATAAGAACCCAAAGATACGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGCTGGTGTGACCTAGAGCAACATAAGAACCCAAAGATACGTTT  383

seq1  CGGCTCCCAGTTTTAGAGAAGATAGTCCATCATTGTGGGCATACAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCCCAGTTTTAGAGAAGATAGTCCATCATTGTGGGCATACAGAAGA  433

seq1  GAGCCCATTATGGCTGTAAGGGATGAAGCAGGGAAAGGAGGAGCTGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCATTATGGCTGTAAGGGATGAAGCAGGGAAAGGAGGAGCTGGAGC  483

seq1  CAGGACAGCACAGGCCGTAAGAGGTACTCCTGCCTTCCTCTCAGGGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCACAGGCCGTAAGAGGTACTCCTGCCTTCCTCTCAGGGCTCT  533

seq1  GAGAAGCTACAGTTCCCAGCTGAGCTACCAGTCAGAGAGATAGATGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTACAGTTCCCAGCTGAGCTACCAGTCAGAGAGATAGATGCTGT  583

seq1  TTCGTTAGAGATGGTTGTTACACAGCACTACAGCAGCCATAGCTGACGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTAGAGATGGTTGTTACACAGCACTACAGCAGCCATAGCTGACGAA  633

seq1  TGCACACGCGGAGGCAAGTGGTTTTTAAATGTATAAAGGTCACCCACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACGCGGAGGCAAGTGGTTTTTAAATGTATAAAGGTCACCCACTGT  683

seq1  TGGATCTAAAACCCACTTCTGCTACTGACTTAGAGCACTTCTTTCAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTAAAACCCACTTCTGCTACTGACTTAGAGCACTTCTTTCAAAAC  733

seq1  TGTGTTTAGTTTATTTGTTTTGAGATGGGGTCTTGGGTAACCCAGGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGTTTATTTGTTTTGAGATGGGGTCTTGGGTAACCCAGGCTGG  783

seq1  CCTTGAACTTGCTACGTGGCCAAGGATGGTCTTGAACTGGCGATCCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTGCTACGTGGCCAAGGATGGTCTTGAACTGGCGATCCTCTT  833

seq1  GCTTCTGTTTCTCAAGTGCTTGGACTACAGGCTCGAGCCACAGCACTCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTTCTCAAGTGCTTGGACTACAGGCTCGAGCCACAGCACTCGG  883

seq1  GTTGTGTAGTGCTGCAGATGGAGAACCTTGGCTTGGTGCATGCTGGGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTAGTGCTGCAGATGGAGAACCTTGGCTTGGTGCATGCTGGGTAG  933

seq1  GCACAGTAGAGCTGAGCTTCCCAGCCTTCATGCTTTTAGGCATCTGTGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAGAGCTGAGCTTCCCAGCCTTCATGCTTTTAGGCATCTGTGCC  983

seq1  TGCGTAGCACAGGCCGAGGGAGGGTGTGTCAGCATGGGCCCCTGGGGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTAGCACAGGCCGAGGGAGGGTGTGTCAGCATGGGCCCCTGGGGCTT  1033

seq1  AGACAGGAAAACAGCAGCTCATTTCATCAATATTTACCACAGCCCAGCGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAAAACAGCAGCTCATTTCATCAATATTTACCACAGCCCAGCGC  1083

seq1  AGCCTGTGTTGTCAGACCTCTGGCCTGTGGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGTTGTCAGACCTCTGGCCTGTGGGAATTC  1119

seq1: chr2_31603202_31604246
seq2: B6Ng01-020D05.g_66_1088

seq1  GAATTCAATGGGTAGAACAGGCTAGCCTCCAACTCAGAGAGACCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGGTAGAACAGGCTAGCCTCCAACTCAGAGAGACCTGCCTG  50

seq1  CCTTTACTCTCGAGTGCTTGAATAAAGGTGTGCACGACCACACCCAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTCTCGAGTGCTTGAATAAAGGTGTGCACGACCACACCCAGCTT  100

seq1  TATCTCAAGTTTTTAACAGACTATGTGTATTGGAGTGTGTACATGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAGTTTTTAACAGACTATGTGTATTGGAGTGTGTACATGCATGC  150

seq1  AGACGCCAGAGTTAACCATTGCTCCCTCCATTGCTCTTAGTTTTTGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCCAGAGTTAACCATTGCTCCCTCCATTGCTCTTAGTTTTTGAGAC  200

seq1  AGACTCTTTCCCTGAACCTAGAGCTCACCAGTGAGTTCTCAAGATAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTCCCTGAACCTAGAGCTCACCAGTGAGTTCTCAAGATAATCC  250

seq1  TGTCTCCATCTCCCCAGGAAAAACTCCTTTCCAAAGAGACTGTGCATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATCTCCCCAGGAAAAACTCCTTTCCAAAGAGACTGTGCATCTC  300

seq1  CATTGTCCTGCATGATTGTTAGCACTGTGTTTGTGACTGTAGCCCGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTGCATGATTGTTAGCACTGTGTTTGTGACTGTAGCCCGTGGA  350

seq1  GTGGGGTGAGATGGGAACTTGCTGCAGTGGACATGAGGAACTCACTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGAGATGGGAACTTGCTGCAGTGGACATGAGGAACTCACTGAGT  400

seq1  GAATATAGTGGGAGTCCCATAGAACCAGACTAGGCTGGCCTTAAACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAGTGGGAGTCCCATAGAACCAGACTAGGCTGGCCTTAAACCTGC  450

seq1  CTGTTTCCTTAGTGCTTTGATTAAAGGTGTGTGCCACCGTTGCCTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTTAGTGCTTTGATTAAAGGTGTGTGCCACCGTTGCCTGGCCT  500

seq1  GAGCATCTTTTTGGGTGCTTACCAGCCATTTGTTTTGATTCTTGGTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTTTTTGGGTGCTTACCAGCCATTTGTTTTGATTCTTGGTGACA  550

seq1  AGCCAATGACCCTTTTGCCAGTTTTAAGCCAGTTTGAACGTGTTCTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGACCCTTTTGCCAGTTTTAAGCCAGTTTGAACGTGTTCTAACT  600

seq1  GGGCAGGAAGGGTTCTCTGCATTTTGGGATGCAGCTATGCCTCAGATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAAGGGTTCTCTGCATTTTGGGATGCAGCTATGCCTCAGATCCA  650

seq1  TGGTAGGATACATGGCTTTTACTTTCCTCACACTGATACCATTTCTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGATACATGGCTTTTACTTTCCTCACACTGATACCATTTCTCCCC  700

seq1  TGTGTTCTTTGGAGAGATTTATCATATGTTTGGACTATTTGGAGAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTTGGAGAGATTTATCATATGTTTGGACTATTTGGAGAATTTA  750

seq1  GGCTTTGGAGTACCACCATCCACACTGCAAGCTAGAGACCCAGGAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGAGTACCACCATCCACACTGCAAGCTAGAGACCCAGGAAAGCT  800

seq1  GGTGGGGTTTCTAGAGACCTTATTACCCTGGGCAGTGTGAGATGCTAATG  850
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGT-GGGTTTCTAGAGA-CTTATTACCCTGGGCAGTGTGAGATGCTAATG  848

seq1  ACTTGAACTGGGAACACGGAAAACAGAAGATCCTGTCCTGTTCAAGAAGC  900
      ||||||||| ||||||||||||||||||||| |||| ||| |||||||  
seq2  ACTTGAACT-GGAACACGGAAAACAGAAGAT-CTGT-CTG-TCAAGAA-T  893

seq1  CAGACCCATGGGCTGGAGAGATGGCTCAGTCGTTAAGAGCATTAACTGCT  950
      ||||| |||||||| |||||| |||||||||| |||||||||  ||||||
seq2  CAGACTCATGGGCT-GAGAGA-GGCTCAGTCG-TAAGAGCAT--ACTGCT  938

seq1  CTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAA  1000
      ||| ||||||||||||| |||  | ||||||| ||| |||||||| || |
seq2  CTT-CAGAGGTCCTGAG-TCA--TTCCAGCAATCAC-TGGTGGCT-AC-A  981

seq1  CCATCTATAAGGAGATCGGACCCCCTCTTCTGGGGTGTCTGAAGA  1045
      || ||| ||| ||| |||||||||||||| | ||| |||||||||
seq2  CCTTCT-TAAAGAG-TCGGACCCCCTCTT-TCGGGGGTCTGAAGA  1023