BAC Information

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BAC

Clone NameB6Ng01-020M13
Chromosome2 (Build37)
Map Location 179,620,265 - 179,765,682
singlet/doubletdoublet
Overlap geneCdh4, Taf4a, Lsm14b
Upstream geneLOC665264, LOC100043168, LOC100039413
Downstream genePsma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020M13.bB6Ng01-020M13.g
ACCDH853480DH853481
length9271,071
definitionDH853480|Mus musculus domesticus DNA, BAC clone: B6Ng01-020M13, 5' end.DH853481|Mus musculus domesticus DNA, BAC clone: B6Ng01-020M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,764,754 - 179,765,682)(179,620,265 - 179,621,337)
sequence
gaattcaagaaatgctggagaaccaccaccccagcctgggatcttctagg
aagtacagtggtcagactctgaagcgaagttctcgaacagctttatgaaa
accagaatgagaacaaactacaacaaaggttaacaacccagtttcttaaa
agagtaagtccctcctaagcaaggatgggctgccaggtgcccactgtggg
agatggccccccatgcccacaaataatcttctgccgctggagagacatga
agtgcctccagtactctctgctacccctgacctgtcccaggtctgtgacc
caggggaacagtacattcttcagggctatggaactggactgagacatgaa
gcacaagttttgatcatggcaaaacaaaaggaaaacactgatgtggagaa
actccagggacagggttggagatactcgagaggcagggatccacaaggtt
cttctgacagaaactgagctggccagtttctcgggccagtcatctcactc
agcaagaacgactccaagaaacaaacaggaaaaagtcttacagaagtcgc
ttgtgtgtgtggtttttaaaaatacttcatctatacagacattcccagcc
aaacactttactgaggtcagggacccctatggaagagtgggaatagaagg
aactgaaggggatgacaacctcataggaagaacaagagtatcaactaacc
tggacccctgggagctcccagagaacacaaagaaggttggtggtaagcca
ccaaccaaagagcatacgcaggctagctgggcctttccctcccctgccgc
cgccccccccccccccccatgtagaagaagactgacttgtctggcctcag
tggagaagatgcgcctaatcctatagagattttgatgtcccagggaaaga
gatgctggaggaggttgttaaggttgg
gaattcttgagacaacatacctgtgattccaacacccaggaaaaagatcg
atgccccaagaaacccggcttctgcctcatccgggtgtggggctaactag
ctagagacactttattccaacctccctctcctctcattggccagaaccca
gaagaagccagagactgcggtaaagggacagtggaaaccaggcccccata
gaaagcaaggcagggagagtctaagagactgggcagtaggaacggccagc
cccacctctgtaggaagccccagttaacctgtcccttcttccaggcagtg
gactatgagctgaaccgtgccttcatgctgaccgtaatggtgtccaacca
ggcgcccctggccagtgggatccagatgtccttccagtccacagcagggg
taaccatctctgtcaccgatgtcaacgaggccccctacttcccctccaac
cacaaactgatccgcctggaagagggtgtgcccgctgggacagcactcac
cactttttctgcagtggaccctgaccggttcatgcagcaagccgtgaggt
gagtcttcagtatagcctggccctgtctggccctcagagcaggatccact
cctgtgtaccacacagaagagtcacaacatgcccaaagaagcctgaacac
caggaagcccagtagagagaggaggaggacaggggtactatgtccagacc
tgaagcactggcttatctagaagcaacccaccccagagagtcacccaata
ggatagcctcgggcatcagggaccagtgtcaccatctccaggctgacaag
gaaagtgtttaaactgtggagccagtgcaggtcatggcttccgtgacagt
ggcaagtgattaagcaaactgctaatgactttgtactcagggtacccata
cacctacaaatgtaggtgatgcaagcatagccctctggaggttccttcag
tatctaagacacccaccacaggacaccaagccactgctggtgcctgtcct
tatgtaaggagggcaacgagtgcatgaagccctgtgctactcttggagga
cagaaatgcctctggggtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_179764754_179765682
seq2: B6Ng01-020M13.b_43_969 (reverse)

seq1  CCAACCTTACCACCCTCCTCCAGCATCCTCCTTCCCTGGGACATC-AAAT  49
      ||||||||| || ||||||||||||| ||| |||||||||||||| ||||
seq2  CCAACCTTAACAACCTCCTCCAGCAT-CTCTTTCCCTGGGACATCAAAAT  49

seq1  CTCTATAGGATTAGGCGCATCTTCTCCCACTGAGGCCAGACAAGTCAGTC  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCTATAGGATTAGGCGCATCTTCT-CCACTGAGGCCAGACAAGTCAGTC  98

seq1  TTCTTCTACATGGGGGGGGGGGGGGGGCGGCGGCAGGGGAGGGAAAGGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACATGGGGGGGGGGGGGGGGCGGCGGCAGGGGAGGGAAAGGCC  148

seq1  CAGCCTAGCCTGCGTATGCTCTTTGGTTGGTGGCTTACCACCAACCTTCT  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAG-CTAGCCTGCGTATGCTCTTTGGTTGGTGGCTTACCACCAACCTTCT  197

seq1  TTGTGTTCTCTGGGAGCTCCCAGGGGTCCAGGTTAGTTGATACTCTTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTCTGGGAGCTCCCAGGGGTCCAGGTTAGTTGATACTCTTGTT  247

seq1  CTTCCTATGAGGTTGTCATCCCCTTCAGTTCCTTCTATTCCCACTCTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATGAGGTTGTCATCCCCTTCAGTTCCTTCTATTCCCACTCTTCC  297

seq1  ATAGGGGTCCCTGACCTCAGTAAAGTGTTTGGCTGGGAATGTCTGTATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGTCCCTGACCTCAGTAAAGTGTTTGGCTGGGAATGTCTGTATAG  347

seq1  ATGAAGTATTTTTAAAAACCACACACACAAGCGACTTCTGTAAGACTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTATTTTTAAAAACCACACACACAAGCGACTTCTGTAAGACTTTT  397

seq1  TCCTGTTTGTTTCTTGGAGTCGTTCTTGCTGAGTGAGATGACTGGCCCGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTGTTTCTTGGAGTCGTTCTTGCTGAGTGAGATGACTGGCCCGA  447

seq1  GAAACTGGCCAGCTCAGTTTCTGTCAGAAGAACCTTGTGGATCCCTGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGCCAGCTCAGTTTCTGTCAGAAGAACCTTGTGGATCCCTGCCT  497

seq1  CTCGAGTATCTCCAACCCTGTCCCTGGAGTTTCTCCACATCAGTGTTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTATCTCCAACCCTGTCCCTGGAGTTTCTCCACATCAGTGTTTTC  547

seq1  CTTTTGTTTTGCCATGATCAAAACTTGTGCTTCATGTCTCAGTCCAGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTTGCCATGATCAAAACTTGTGCTTCATGTCTCAGTCCAGTTC  597

seq1  CATAGCCCTGAAGAATGTACTGTTCCCCTGGGTCACAGACCTGGGACAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCCTGAAGAATGTACTGTTCCCCTGGGTCACAGACCTGGGACAGG  647

seq1  TCAGGGGTAGCAGAGAGTACTGGAGGCACTTCATGTCTCTCCAGCGGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGTAGCAGAGAGTACTGGAGGCACTTCATGTCTCTCCAGCGGCAG  697

seq1  AAGATTATTTGTGGGCATGGGGGGCCATCTCCCACAGTGGGCACCTGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATTTGTGGGCATGGGGGGCCATCTCCCACAGTGGGCACCTGGCA  747

seq1  GCCCATCCTTGCTTAGGAGGGACTTACTCTTTTAAGAAACTGGGTTGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCCTTGCTTAGGAGGGACTTACTCTTTTAAGAAACTGGGTTGTTA  797

seq1  ACCTTTGTTGTAGTTTGTTCTCATTCTGGTTTTCATAAAGCTGTTCGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTTGTAGTTTGTTCTCATTCTGGTTTTCATAAAGCTGTTCGAGA  847

seq1  ACTTCGCTTCAGAGTCTGACCACTGTACTTCCTAGAAGATCCCAGGCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGCTTCAGAGTCTGACCACTGTACTTCCTAGAAGATCCCAGGCTGG  897

seq1  GGTGGTGGTTCTCCAGCATTTCTTGAATTC  929
      ||||||||||||||||||||||||||||||
seq2  GGTGGTGGTTCTCCAGCATTTCTTGAATTC  927

seq1: chr2_179620265_179621337
seq2: B6Ng01-020M13.g_67_1137

seq1  GAATTCTTGAGACAACATACCTGTGATTCCAACACCCAGGAAAAAGATCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGACAACATACCTGTGATTCCAACACCCAGGAAAAAGATCG  50

seq1  ATGCCCCAAGAAACCCGGCTTCTGCCTCATCCGGGTGTGGGGCTAACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCAAGAAACCCGGCTTCTGCCTCATCCGGGTGTGGGGCTAACTAG  100

seq1  CTAGAGACACTTTATTCCAACCTCCCTCTCCTCTCATTGGCCAGAACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACACTTTATTCCAACCTCCCTCTCCTCTCATTGGCCAGAACCCA  150

seq1  GAAGAAGCCAGAGACTGCGGTAAAGGGACAGTGGAAACCAGGCCCCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCCAGAGACTGCGGTAAAGGGACAGTGGAAACCAGGCCCCCATA  200

seq1  GAAAGCAAGGCAGGGAGAGTCTAAGAGACTGGGCAGTAGGAACGGCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGGCAGGGAGAGTCTAAGAGACTGGGCAGTAGGAACGGCCAGC  250

seq1  CCCACCTCTGTAGGAAGCCCCAGTTAACCTGTCCCTTCTTCCAGGCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCTGTAGGAAGCCCCAGTTAACCTGTCCCTTCTTCCAGGCAGTG  300

seq1  GACTATGAGCTGAACCGTGCCTTCATGCTGACCGTAATGGTGTCCAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGAGCTGAACCGTGCCTTCATGCTGACCGTAATGGTGTCCAACCA  350

seq1  GGCGCCCCTGGCCAGTGGGATCCAGATGTCCTTCCAGTCCACAGCAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCCCTGGCCAGTGGGATCCAGATGTCCTTCCAGTCCACAGCAGGGG  400

seq1  TAACCATCTCTGTCACCGATGTCAACGAGGCCCCCTACTTCCCCTCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATCTCTGTCACCGATGTCAACGAGGCCCCCTACTTCCCCTCCAAC  450

seq1  CACAAACTGATCCGCCTGGAAGAGGGTGTGCCCGCTGGGACAGCACTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTGATCCGCCTGGAAGAGGGTGTGCCCGCTGGGACAGCACTCAC  500

seq1  CACTTTTTCTGCAGTGGACCCTGACCGGTTCATGCAGCAAGCCGTGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTCTGCAGTGGACCCTGACCGGTTCATGCAGCAAGCCGTGAGGT  550

seq1  GAGTCTTCAGTATAGCCTGGCCCTGTCTGGCCCTCAGAGCAGGATCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTCAGTATAGCCTGGCCCTGTCTGGCCCTCAGAGCAGGATCCACT  600

seq1  CCTGTGTACCACACAGAAGAGTCACAACATGCCCAAAGAAGCCTGAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTACCACACAGAAGAGTCACAACATGCCCAAAGAAGCCTGAACAC  650

seq1  CAGGAAGCCCAGTAGAGAGAGGAGGAGGACAGGGGTACTATGTCCAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCCCAGTAGAGAGAGGAGGAGGACAGGGGTACTATGTCCAGACC  700

seq1  TGAAGCACTGGCTTATCTAGAAGCAACCCACCCCAGAGAGTCACCCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACTGGCTTATCTAGAAGCAACCCACCCCAGAGAGTCACCCAATA  750

seq1  GGATAGCCTCGGGCATCAGGGACCAGTGTCACCATCTCCAGGCTGACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCTCGGGCATCAGGGACCAGTGTCACCATCTCCAGGCTGACAAG  800

seq1  GAAGGTGTTTAAACTGTGGAGCCAGTGCAGGTCATGGCTTCCGTGACAGT  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTTTAAACTGTGGAGCCAGTGCAGGTCATGGCTTCCGTGACAGT  850

seq1  GGCAAGTGATTTAAGCAAACTGCTAATGACTTTGTACCTCAGGGTACCCA  900
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  GGCAAGTGA-TTAAGCAAACTGCTAATGACTTTGTA-CTCAGGGTACCCA  898

seq1  TACACCTACAAAATGTAGGTGATGCAGGCATAGCCCTCT-GAGG-TCCTC  948
      ||||||||| |||||||||||||||| |||||||||||| |||| |||| 
seq2  TACACCTAC-AAATGTAGGTGATGCAAGCATAGCCCTCTGGAGGTTCCTT  947

seq1  CAGTATCTAAGACCACCCACCACAGGGACA-CGAGCCACTGCTGTGGCCT  997
      |||||||||||| ||||||||||| ||||| | |||||||||||  ||||
seq2  CAGTATCTAAGA-CACCCACCACA-GGACACCAAGCCACTGCTGGTGCCT  995

seq1  GTCCTTATGT-AGGAGGCGCACCGAGGTGCATGAAGCCCTGGGC-ACTCT  1045
      |||||||||| |||||| ||| ||| ||||||||||||||| || |||||
seq2  GTCCTTATGTAAGGAGG-GCAACGA-GTGCATGAAGCCCTGTGCTACTCT  1043

seq1  GGGAGGACAGAAATGCCACTGGGTTATA  1073
       |||||||||||||||| ||||| ||||
seq2  TGGAGGACAGAAATGCCTCTGGGGTATA  1071