BAC Information

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BAC

Clone NameB6Ng01-020P16
Chromosome2 (Build37)
Map Location 113,121,351 - 113,122,413
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020P16.g
ACCDH853624
length1,048
definitionDH853624|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggctccttcttctaacacaccagaggcagactcacctgtac
agccacatcagaacatgctcattataaacagtgtgctgtggcagaatctt
cagtggacagccacaccctctaggtaccactggttgacaagttgtgatga
aaatattcttcccattaaactgcatcttttgatttcccttaaggacacca
tacaaattcaccctctctatgaaaccttctatcacaaatcattcctggct
cattgcctcaaagagataatataatatatatgttgtgtgagaacacattt
cctaatgacacaaagacgctcaaacccacatttgaagctccaaatgtcta
ttgctatacttaatattatggtccatatgtttcctttggtttattctctt
tcctttagttttattctccaattcacttttcacatggtcctgaacttgaa
cttattttttcattatttcacattgagcattttatcctaaatatgggtat
agttgactcagatagatgtaggtatcgacctcattgtagataataaataa
ggatacgagagggggaacagggctgaccgtgatgggactcagactttgga
tatctgttcttctcatttccaggtgaaaggatatgaacaggttattgaac
ccaataagcactggttttctaatttacaaaaatgcaaatgatgtgtgcct
actccataacagtgagatgaggttaaaagggatgtgtcacaatgtctgca
tgacataaatacttaataaattataactatagtagccgtcattgttgcaa
ctatagtagctttcattgttgcaaagcacctaaattgactcatcctcttg
atagttccttctttatcatcatgaaactgaattcctccaggctgggtctc
accaaatgttctttgtcatatccttctttgttccagttatctgtctggat
tctgctcacgcagccttagtatctggctttccctgacactgtgctggata
gtctgcttgctcctgctatccttcagtcatgggtctagcctagaatcc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_113121351_113122413
seq2: B6Ng01-020P16.g_66_1113 (reverse)

seq1  GGATACTAGGCTAGACCCATGACTGAAGGATAGCAGGGAGCAAAAGCCAA  50
      |||| |||||||||||||||||||||||||||||| |||||  ||||  |
seq2  GGATTCTAGGCTAGACCCATGACTGAAGGATAGCA-GGAGC--AAGC--A  45

seq1  GACTATCCAAGCACAGTGTCCAGGGGAAAGCCAGATTACCTAAGGCTGCG  100
      |||||||| |||||||||||   |||||||||||||   |||||||||||
seq2  GACTATCC-AGCACAGTGTC--AGGGAAAGCCAGAT--ACTAAGGCTGCG  90

seq1  TGAAGCCAAGAATCCAGACAGATAAACTGGAACAAAGAAGGATATGACAA  150
      || |||  ||||||||||||||| ||||||||||||||||||||||||||
seq2  TG-AGC--AGAATCCAGACAGAT-AACTGGAACAAAGAAGGATATGACAA  136

seq1  AGAACATTTGGTGAAGACCCAGCCTGGAGGAATTCAGTTTCATGATGATA  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAACATTTGGTG-AGACCCAGCCTGGAGGAATTCAGTTTCATGATGATA  185

seq1  AAGAAGGAACTATCAAGAGGATGAGTCAATTTAGGTGCTTTGCAACAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAACTATCAAGAGGATGAGTCAATTTAGGTGCTTTGCAACAATG  235

seq1  AAAGCTACTATAGTTGCAACAATGACGGCTACTATAGTTATAATTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACTATAGTTGCAACAATGACGGCTACTATAGTTATAATTTATTA  285

seq1  AGTATTTATGTCATGCAGACATTGTGACACATCCCTTTTAACCTCATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTATGTCATGCAGACATTGTGACACATCCCTTTTAACCTCATCTC  335

seq1  ACTGTTATGGAGTAGGCACACATCATTTGCATTTTTGTAAATTAGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATGGAGTAGGCACACATCATTTGCATTTTTGTAAATTAGAAAAC  385

seq1  CAGTGCTTATTGGGTTCAATAACCTGTTCATATCCTTTCACCTGGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTATTGGGTTCAATAACCTGTTCATATCCTTTCACCTGGAAATG  435

seq1  AGAAGAACAGATATCCAAAGTCTGAGTCCCATCACGGTCAGCCCTGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACAGATATCCAAAGTCTGAGTCCCATCACGGTCAGCCCTGTTCC  485

seq1  CCCTCTCGTATCCTTATTTATTATCTACAATGAGGTCGATACCTACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCGTATCCTTATTTATTATCTACAATGAGGTCGATACCTACATCT  535

seq1  ATCTGAGTCAACTATACCCATATTTAGGATAAAATGCTCAATGTGAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTCAACTATACCCATATTTAGGATAAAATGCTCAATGTGAAATA  585

seq1  ATGAAAAAATAAGTTCAAGTTCAGGACCATGTGAAAAGTGAATTGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAATAAGTTCAAGTTCAGGACCATGTGAAAAGTGAATTGGAGAA  635

seq1  TAAAACTAAAGGAAAGAGAATAAACCAAAGGAAACATATGGACCATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAAAGGAAAGAGAATAAACCAAAGGAAACATATGGACCATAATA  685

seq1  TTAAGTATAGCAATAGACATTTGGAGCTTCAAATGTGGGTTTGAGCGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATAGCAATAGACATTTGGAGCTTCAAATGTGGGTTTGAGCGTCT  735

seq1  TTGTGTCATTAGGAAATGTGTTCTCACACAACATATATATTATATTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCATTAGGAAATGTGTTCTCACACAACATATATATTATATTATCT  785

seq1  CTTTGAGGCAATGAGCCAGGAATGATTTGTGATAGAAGGTTTCATAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGCAATGAGCCAGGAATGATTTGTGATAGAAGGTTTCATAGAGA  835

seq1  GGGTGAATTTGTATGGTGTCCTTAAGGGAAATCAAAAGATGCAGTTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAATTTGTATGGTGTCCTTAAGGGAAATCAAAAGATGCAGTTTAAT  885

seq1  GGGAAGAATATTTTCATCACAACTTGTCAACCAGTGGTACCTAGAGGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAATATTTTCATCACAACTTGTCAACCAGTGGTACCTAGAGGGTG  935

seq1  TGGCTGTCCACTGAAGATTCTGCCACAGCACACTGTTTATAATGAGCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCACTGAAGATTCTGCCACAGCACACTGTTTATAATGAGCATG  985

seq1  TTCTGATGTGGCTGTACAGGTGAGTCTGCCTCTGGTGTGTTAGAAGAAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGTGGCTGTACAGGTGAGTCTGCCTCTGGTGTGTTAGAAGAAGG  1035

seq1  AGCCAAAGAATTC  1063
      |||||||||||||
seq2  AGCCAAAGAATTC  1048