BAC Information

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BAC

Clone NameB6Ng01-021G05
Chromosome2 (Build37)
Map Location 39,408,503 - 39,575,586
singlet/doubletdoublet
Overlap genenone
Upstream geneNek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021G05.bB6Ng01-021G05.g
ACCDH853907DH853908
length1,053648
definitionDH853907|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G05, 5' end.DH853908|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,574,559 - 39,575,586)(39,408,503 - 39,409,150)
sequence
gaattcagaaatctgcctgcctttgtaaatacaaacaataggtttatctg
gatgggaccttaccctgagatcaccactccctagatctttttgtctcctt
ccttaatatctttctgacaacctgacttattggtacagctgtctctgttc
ttctaggtgtgtgaagctcctcatataattcatattgcacccttatattt
tgcatcattgagaaatcttgtaaaggatagctcttaggctgatttatact
ttgaactcatgtttttagagttctttcctacattcttaagagctgtcctg
aaggcttcagtgtcacaaagacatgtttttgcttcctagaattgtgctgt
ttctgattattatggtgtcattaaaccagagaggacattcctccgaaaga
agaacatatgtaagccttatgcctacagcaactgtcaacacttgtggaag
accatgcctggctggctcaactccagcgctggaaatcatgtcacactgtt
ccttccaaggtcatgaagaactcagtgttctaattccagcctgtctttat
cacccctacttcattcagagatgctgatatcttctcttcccttctgtata
acagcaacaatagtttacggtgtggtttgaaaaatcactggaaaatgttg
gaattttaatcattcagagaagttcaccatattgaagataccagttgcat
ttattacttaagagtaataataatcaaaaactttaacaatttccctgtat
tgctattgcttccattttctcccataattatggtttctcttcaaatctta
aattaatgattagccagttatgagcagaaaagtactcataaaatttagtc
tctggatatattatgtaatatgtaacaattaaaacccattatagatcatt
ctgagaacataattaaagataaataatggaaaatgagattatcctggacc
ttaacaatctgtatacatgtgtattactaagtcctttctaactgttctgt
agcattatggatgaagcatgttgtcagctggtcataagaaatatcatgga
tcc
gaattcagtagttgttcagtccatgaggctagatgtctcagttggtcttc
agtatatgcctgaataaaagaagtaggctctaatgccagtgaaggaatgt
ctactgtgagaaagaacaaagagacaaaaggagagcaagcttcatttttc
catgccctttagacagccaatagaatgcctggtccaggttaaagatggat
tttcctacatcaaaaatatctgaattaaaagctatctccccaccctaaag
atcctgataagaagtggctcttcccacttcaaattacttaattaagaaac
agtcctaataggtatgtccagatctttttgttttagttcattccagatgt
agttgacaaccaagaattgtcataacaatcttgattttccttaaagtaaa
ttctgccataatagattttttttttgtgggttgccttggtgctgtttgta
tttgatgctactcttgccccttatgaggagcatatcaagtactcaggtga
ttccatatgaatcctgctgctcaatttaaccagtcaaataaaggttagag
actgtgattgggcaatggaagggaaaggcagggctagaagttttagataa
gggagagaggaaggaagaaggggaagatgagacagagggtggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_39574559_39575586
seq2: B6Ng01-021G05.b_74_1086 (reverse)

seq1  TTTCTTATGGAACACAGCCTGACAACAATGCTTCATCCATAATTGCTAAC  50
      |||||||||  || ||| |||||||| ||||||||||||||| |||| ||
seq2  TTTCTTATG--AC-CAG-CTGACAAC-ATGCTTCATCCATAA-TGCT-AC  43

seq1  AGGAACAGTTTAGAAAAGGACTTAGTAATACACATGTATAACAGATTGTG  100
      | |||||| |||| ||||||||||||||||||||||||| ||||||||| 
seq2  A-GAACAG-TTAG-AAAGGACTTAGTAATACACATGTAT-ACAGATTGT-  88

seq1  TAAGGTCCAGGATTATTCTCATTTTCCATTTATTTATCTTTATTTATGTT  150
      |||||||||||| || |||||||||||| ||||||||||||| |||||||
seq2  TAAGGTCCAGGA-TAATCTCATTTTCCA-TTATTTATCTTTAATTATGTT  136

seq1  CTCAGAATGATCTATAATGGGTTTTAATTGTTACATATTACATAATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATGATCTATAATGGGTTTTAATTGTTACATATTACATAATATAT  186

seq1  CCAGGGACTAAATTTTATGAGTACTTTTCTGCTCATAACTGGCTAATCAT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTAAATTTTATGAGTACTTTTCTGCTCATAACTGGCTAATCAT  236

seq1  TAATTTAAGATTTGAAGAGAAACCATAATTATGGGAGAAAATGGAAAGCA  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAATTTAAGATTTGAAGAGAAACCATAATTATGGGAGAAAATGG-AAGCA  285

seq1  ATAGCAATACAGGGAAATTGTTAAAGTTTTTGATTATTATTACTCTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATACAGGGAAATTGTTAAAGTTTTTGATTATTATTACTCTTAAG  335

seq1  TAATAAATGCAACTGGTATCTTCAATATGGTGAACTTCTCTGAATGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGCAACTGGTATCTTCAATATGGTGAACTTCTCTGAATGATTA  385

seq1  AAATTCCAACATTTTCCAGTGATTTTTCAAACCACACCGTAAACTATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAACATTTTCCAGTGATTTTTCAAACCACACCGTAAACTATTGT  435

seq1  TGCTGTTATACAGAAGGGAAGAGAAGATATCAGCATCTCTGAATGAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTATACAGAAGGGAAGAGAAGATATCAGCATCTCTGAATGAAGTA  485

seq1  GGGGTGATAAAGACAGGCTGGAATTAGAACACTGAGTTCTTCATGACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGATAAAGACAGGCTGGAATTAGAACACTGAGTTCTTCATGACCTT  535

seq1  GGAAGGAACAGTGTGACATGATTTCCAGCGCTGGAGTTGAGCCAGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAACAGTGTGACATGATTTCCAGCGCTGGAGTTGAGCCAGCCAGG  585

seq1  CATGGTCTTCCACAAGTGTTGACAGTTGCTGTAGGCATAAGGCTTACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTTCCACAAGTGTTGACAGTTGCTGTAGGCATAAGGCTTACATA  635

seq1  TGTTCTTCTTTCGGAGGAATGTCCTCTCTGGTTTAATGACACCATAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCTTTCGGAGGAATGTCCTCTCTGGTTTAATGACACCATAATAA  685

seq1  TCAGAAACAGCACAATTCTAGGAAGCAAAAACATGTCTTTGTGACACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACAGCACAATTCTAGGAAGCAAAAACATGTCTTTGTGACACTGA  735

seq1  AGCCTTCAGGACAGCTCTTAAGAATGTAGGAAAGAACTCTAAAAACATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCAGGACAGCTCTTAAGAATGTAGGAAAGAACTCTAAAAACATGA  785

seq1  GTTCAAAGTATAAATCAGCCTAAGAGCTATCCTTTACAAGATTTCTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGTATAAATCAGCCTAAGAGCTATCCTTTACAAGATTTCTCAAT  835

seq1  GATGCAAAATATAAGGGTGCAATATGAATTATATGAGGAGCTTCACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAATATAAGGGTGCAATATGAATTATATGAGGAGCTTCACACAC  885

seq1  CTAGAAGAACAGAGACAGCTGTACCAATAAGTCAGGTTGTCAGAAAGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGAACAGAGACAGCTGTACCAATAAGTCAGGTTGTCAGAAAGATA  935

seq1  TTAAGGAAGGAGACAAAAAGATCTAGGGAGTGGTGATCTCAGGGTAAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAGGAGACAAAAAGATCTAGGGAGTGGTGATCTCAGGGTAAGGT  985

seq1  CCCATCCAGATAAACCTATTGTTTGTAT  1028
      ||||||||||||||||||||||||||||
seq2  CCCATCCAGATAAACCTATTGTTTGTAT  1013

seq1: chr2_39408503_39409150
seq2: B6Ng01-021G05.g_69_716

seq1  GAATTCAGTAGTTGTTCAGTCCATGAGGCTAGATGTCTCAGTTGGTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTTGTTCAGTCCATGAGGCTAGATGTCTCAGTTGGTCTTC  50

seq1  AGTATATGCCTGAATAAAAGAAGTAGGCTCTAATGCCAGTGAAGGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGCCTGAATAAAAGAAGTAGGCTCTAATGCCAGTGAAGGAATGT  100

seq1  CTACTGTGAGAAAGAACAAAGAGACAAAAGGAGAGCAAGCTTCATTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGAGAAAGAACAAAGAGACAAAAGGAGAGCAAGCTTCATTTTTC  150

seq1  CATGCCCTTTAGACAGCCAATAGAATGCCTGGTCCAGGTTAAAGATGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTTTAGACAGCCAATAGAATGCCTGGTCCAGGTTAAAGATGGAT  200

seq1  TTTCCTACATCAAAAATATCTGAATTAAAAGCTATCTCCCCACCCTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACATCAAAAATATCTGAATTAAAAGCTATCTCCCCACCCTAAAG  250

seq1  ATCCTGATAAGAAGTGGCTCTTCCCACTTCAAATTACTTAATTAAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGATAAGAAGTGGCTCTTCCCACTTCAAATTACTTAATTAAGAAAC  300

seq1  AGTCCTAATAGGTATGTCCAGATCTTTTTGTTTTAGTTCATTCCAGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAATAGGTATGTCCAGATCTTTTTGTTTTAGTTCATTCCAGATGT  350

seq1  AGTTGACAACCAAGAATTGTCATAACAATCTTGATTTTCCTTAAAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACAACCAAGAATTGTCATAACAATCTTGATTTTCCTTAAAGTAAA  400

seq1  TTCTGCCATAATAGATTTTTTTTTTGTGGGTTGCCTTGGTGCTGTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCATAATAGATTTTTTTTTTGTGGGTTGCCTTGGTGCTGTTTGTA  450

seq1  TTTGATGCTACTCTTGCCCCTTATGAGGAGCATATCAAGTACTCAGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCTACTCTTGCCCCTTATGAGGAGCATATCAAGTACTCAGGTGA  500

seq1  TTCCATATGAATCCTGCTGCTCAATTTAACCAGTCAAATAAAGGTTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATGAATCCTGCTGCTCAATTTAACCAGTCAAATAAAGGTTAGAG  550

seq1  ACTGTGATTGGGCAATGGAAGGGAAAGGCAGGGCTAGAAGTTTTAGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATTGGGCAATGGAAGGGAAAGGCAGGGCTAGAAGTTTTAGATAA  600

seq1  GGGAGAGAGGAAGGAAGAAGGGGAAGATGAGACAGAGGGTGGAGGGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGGAAGGAAGAAGGGGAAGATGAGACAGAGGGTGGAGGGAG  648