BAC Information

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BAC

Clone NameB6Ng01-021M06
Chromosome2 (Build37)
Map Location 87,388,197 - 87,529,681
singlet/doubletdoublet
Overlap geneLOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135
Upstream geneOlfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038
Downstream geneOlfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M06.bB6Ng01-021M06.g
ACCDH854179DH854180
length972947
definitionDH854179|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M06, 5' end.DH854180|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,388,197 - 87,389,171)(87,529,124 - 87,529,681)
sequence
gaattctctgagttatgagcctgtcagcctgcccctgagtgcacaagatt
ttgtctcttaggaataagaggaagttaaaataacaggattaaggttgaga
tttcaaacaatcaacatgattgaagagcattcctattatcaatctttaaa
catttttatgtaggtaattcccaaacttagcattagcaaattgacttcaa
ttaatttggtactcattactttttgatcatcactcataatatatatttta
atgttataaaatagggaactattatatatccatacacctgtacagattta
tgttaacccccaaaatacaacaaaccatgcattcatatttacttagtgga
tacaggaaatttcattagctcattgcctaaagatatatatatacacactt
atacttatcttaggcaatatactatatatatacatatacatatgtgtata
tatatatacatattggaattgatggatattttttcttgttctgaaaatat
atttttcttacataatatatctgattaacatttctactccctctcttctc
tcagtctctcttcacataccatgccatatgaattcaactcatttctgtct
gtcagagaataggtccccctaggttttctctgtactctagcacttcaagt
ctcagcaaggctaggtgcttcctctcccattgattccagagaaggcagcc
caggtagtagaatataccccattgacaggcaacagcttttgggatagccc
cagctccagttgttcaagaaacaaataaatccaaattgcacatctactac
ataggaataggaaggtctaggtccagcctatgtatgttcttggttggtgg
tttagattctgagagcgctaaagttccaggttattgactctgttggtctt
cttgtagagttctaatccccttcacggcctgcaaccttcatcttattctg
tataaattcccaaactcataca
gaattcatggctccagatacctgtgtagcagaggattgcattacctgaca
tcaatagaaggggagacccttggtcctgtggaggattgaaactgtagcat
aaggttgtgaggcagcagtgggtaaatagatggtggaggagcaccctcac
agaggggtatgggataaggggctgtagaggggtatctgtgaagggagata
tcatttgaaatttaaatgaataaaatgattaattaaaataaaataaagta
aggtcttactgaatgatatgttgatgtactgtttagatgatccattttaa
ctctgtggattaagatctcattgttggcatcatctacaaaagacttccca
aactaaggatcaaggagttttctttgtgactgtgtctcctaggaatgtca
gaatgtacaccaatacagtctcatcgatgtgactggctaaacacgaactg
ggtgaggtctacacaaacatgacaaagtaaaggtggaaaaactcacaagt
cttcaaccagacaaaagaattagagacaactaagaaatgctgagagtgag
agaaatagttttctctaggcaagaccacaccagttggctacaaattagca
aatggtcagccctaaaaacacacgttaaggaacattatacagactgagaa
gattatagctaagaatgtattagtttatacatgcaagcatataacaacag
ataacaatggttaatgaggaaaaaggacatgaatttgaaagagagcaaga
gagagatttcggaattgaagaagaaaagttaaaggatgccactataatgc
catctcaaataaaagatagatatatataaaaccatcaaaatggacccatt
tatttcttacctactttccatatcaagattgatttgcagagacatgtcac
tctctaggctttgttattaaattgaaagagtgaattggggtggaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_87388197_87389171
seq2: B6Ng01-021M06.b_45_1016

seq1  GAATTCTCTGAGTTATGAGCCTGTCAGCCTGCCCCTGAGTGCACAAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGTTATGAGCCTGTCAGCCTGCCCCTGAGTGCACAAGATT  50

seq1  TTGTCTCTTAGGAATAAGAGGAAGTTAAAATAACAGGATTAAGGTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTTAGGAATAAGAGGAAGTTAAAATAACAGGATTAAGGTTGAGA  100

seq1  TTTCAAACAATCAACATGATTGAAGAGCATTCCTATTATCAATCTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAATCAACATGATTGAAGAGCATTCCTATTATCAATCTTTAAA  150

seq1  CATTTTTATGTAGGTAATTCCCAAACTTAGCATTAGCAAATTGACTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATGTAGGTAATTCCCAAACTTAGCATTAGCAAATTGACTTCAA  200

seq1  TTAATTTGGTACTCATTACTTTTTGATCATCACTCATAATATATATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGGTACTCATTACTTTTTGATCATCACTCATAATATATATTTTA  250

seq1  ATGTTATAAAATAGGGAACTATTATATATCCATACACCTGTACAGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAAAATAGGGAACTATTATATATCCATACACCTGTACAGATTTA  300

seq1  TGTTAACCCCCAAAATACAACAAACCATGCATTCATATTTACTTAGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACCCCCAAAATACAACAAACCATGCATTCATATTTACTTAGTGGA  350

seq1  TACAGGAAATTTCATTAGCTCATTGCCTAAAGATATATATATACACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAATTTCATTAGCTCATTGCCTAAAGATATATATATACACACTT  400

seq1  ATACTTATCTTAGGCAATATACTATATATATACATATACATATGTGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATCTTAGGCAATATACTATATATATACATATACATATGTGTATA  450

seq1  TATATATACATATTGGAATTGATGGATATTTTTTCTTGTTCTGAAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACATATTGGAATTGATGGATATTTTTTCTTGTTCTGAAAATAT  500

seq1  ATTTTTCTTACATAATATATCTGATTAACATTTCTACTCCCTCTCTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTACATAATATATCTGATTAACATTTCTACTCCCTCTCTTCTC  550

seq1  TCAGTCTCTCTTCACATACCATGCCATATGAATTCAACTCATTTCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCTCTTCACATACCATGCCATATGAATTCAACTCATTTCTGTCT  600

seq1  GTCAGAGAATAGGTCCCCCTAGGTTTTCTCTGTACTCTAGCACTTCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAATAGGTCCCCCTAGGTTTTCTCTGTACTCTAGCACTTCAAGT  650

seq1  CTCAGCAAGGCTAGGTGCTTCCTCTCCCATTGATTCCAGAGAAGGCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAGGCTAGGTGCTTCCTCTCCCATTGATTCCAGAGAAGGCAGCC  700

seq1  CAGGTAGTAGAATATACCCCATTGACAGGCAACAGCTTTTGGGATAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGTAGAATATACCCCATTGACAGGCAACAGCTTTTGGGATAGCCC  750

seq1  CAGCTCCAGTTGTTCAAGAAACAAATAAATCCAAATTGCACATCTACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCAGTTGTTCAAGAAACAAATAAATCCAAATTGCACATCTACTAC  800

seq1  ATAGGAATAGGAAGGTCTAGGTCCAGCCTATGTATGTTCTTGGTTGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAATAGGAAGGTCTAGGTCCAGCCTATGTATGTTCTTGGTTGGTGG  850

seq1  TTTAGATTCTGAGAGCGCTAAGGTTCCAGGTTAATTGACTCTGTTGGTCT  900
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  TTTAGATTCTGAGAGCGCTAAAGTTCCAGGTT-ATTGACTCTGTTGGTCT  899

seq1  TCTTGTAGAGTTCCTATCCCCTTCACGGCCTGCAAACCTTCATCTTATTC  950
      |||||||||||||  |||||||||||||||||| ||||||||||||||||
seq2  TCTTGTAGAGTTCTAATCCCCTTCACGGCCTGC-AACCTTCATCTTATTC  948

seq1  TGTATAAATTCCCAAACTCCATACA  975
      |||||||||||||||||| ||||||
seq2  TGTATAAATTCCCAAACT-CATACA  972

seq1: chr2_87529124_87529681
seq2: B6Ng01-021M06.g_463_1014 (reverse)

seq1  AGTTCCACCCCAATATCACTCTTTCTATTTCAATACAAAGCCTAGAGAGT  50
      |||||||||||||| |||||||||| |||| |  ||||||||||||||||
seq2  AGTTCCACCCCAAT-TCACTCTTTCAATTTAATAACAAAGCCTAGAGAGT  49

seq1  GACATGTCTCTTGCAAATTCATCCTGATATGGAAAGTGGGTAAGAAAATA  100
      |||||||||| |||||||  ||| ||||||||||||| |||||||||  |
seq2  GACATGTCTC-TGCAAATCAATCTTGATATGGAAAGTAGGTAAGAAATAA  98

seq1  ATGGGTCCCTTTTTGATGGTTTTATTATATATCTATCTTTTATTTTGAGA  150
      |||||| || |||||||||||||| ||||||||||||||||| |||||||
seq2  ATGGGT-CCATTTTGATGGTTTTA-TATATATCTATCTTTTA-TTTGAGA  145

seq1  TGGCATTATAGTGGCATCCTTTAACTTTTCTTCTTCATTCCTGAAATCTC  200
      ||||||||||||||||||||||||||||||||||||| | | ||||||||
seq2  TGGCATTATAGTGGCATCCTTTAACTTTTCTTCTTCAATTCCGAAATCTC  195

seq1  TCTCTTTGCTCTCTTTCAAATTCATGTCCTTTTTCCTCATTAACCATTGT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTC-TTGCTCTCTTTCAAATTCATGTCCTTTTTCCTCATTAACCATTGT  244

seq1  TATCTGTTGTTATATGCTTGCATGTATAAACTAATACATTCTTAGCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTGTTATATGCTTGCATGTATAAACTAATACATTCTTAGCTATA  294

seq1  ATCTTCTCAGTCTGTATAATGTTCCTTAACGTGTGTTTTTAGGGCTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCAGTCTGTATAATGTTCCTTAACGTGTGTTTTTAGGGCTGACC  344

seq1  ATTTGCTAATTTGTAGCCAACTGGTGTGGTCTTGCCTAGAGAAAACTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTAATTTGTAGCCAACTGGTGTGGTCTTGCCTAGAGAAAACTATT  394

seq1  TCTCTCACTCTCAGCATTTCTTAGTTGTCTCTAATTCTTTTGTCTGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTCTCAGCATTTCTTAGTTGTCTCTAATTCTTTTGTCTGGTTG  444

seq1  AAGACTTGTGAGTTTTTCCACCTTTACTTTGTCATGTTTGTGTAGACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGTGAGTTTTTCCACCTTTACTTTGTCATGTTTGTGTAGACCTC  494

seq1  ACCCAGTTCGTGTTTAGCCAGTCACATCGATGAGACTGTATTGGTGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTCGTGTTTAGCCAGTCACATCGATGAGACTGTATTGGTGTACA  544

seq1  TTCTGACA  558
      ||||||||
seq2  TTCTGACA  552