BAC Information

Click to search

BAC

Clone NameB6Ng01-021N12
Chromosome2 (Build37)
Map Location 38,902,256 - 39,073,589
singlet/doubletdoublet
Overlap geneGolga1, A930041I02Rik, LOC100042584, Ppp6c
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l
Downstream geneVmn2r-ps2, Ppia-ps2_560.1, LOC100042604, Magmas-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021N12.bB6Ng01-021N12.g
ACCDH854239DH854240
length705862
definitionDH854239|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N12, 5' end.DH854240|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,902,256 - 38,902,960)(39,072,724 - 39,073,589)
sequence
aggatactgttgtcttttctcccttcacctcttccacttccttaaaaaaa
taaaagaaaaaagaaatggatgtcttaaactgttttcaaaaccaatctca
aatgcctaagcctgtcttagcttctcaagtccctagactataggtatgta
ccaccacatctggaaataccatgtcttctgttcagctacctgggaagctg
agtagctctctgagtacaatttggctagaacaggaagtagacctgtggga
ctcaggaggaagtccctgtccttgtccctgattttaccttttgtaggtca
atggaatgctgctggatgatcgcctggagctcttgttccttttgttccag
gactacaatcttatgttctgcacctgcttttgaagctgtcaagtgatctc
ttcatgaaaagaaagcagacaacgagcaaattttgatatttcctctatta
ctctccaaaggcagaatgcacatgactccttatatttcaggctgcaagtg
ttgttacagccacactaagtttatctccgtgtaaaggctccttggctttc
agaaacagaagcaggaagaccacccaggtctaagcaatgagttctgtctt
tgagtactcaataactttacaactcaaatcagattgtcctgcgtagtttt
actagaataaacttgtgcgtctgcaggggagggagagagagtgagtggtg
atgga
gaattctgtctcctgagtgctagaattaaaggtgtgggccaccacatggg
actaaagatagactgttttatgtggtaagaatatgacaaaatcttaaaga
tgtctgaatggaatttgaatgtctgaatgattattttgaaggaatactct
tgagagatttttaagggcagtaaaagggaggttttaaaataatgttctgg
caacattatggatcatagactggggtgagacatgactgtcagaaataggt
atagtggtgaaggcttgtaataccagcaccagaaggtagagtcaggaggg
tcacaagtacaaggtcttcttcaactatgtagagaacctggactacgtga
gaccctatctcaaaccaacaacaacaaccatatgtataatatatattcta
tatatttataattttgagggtcaagagggaacagggagttggggggccgg
gggcagagaatagaatgggagaccatgaatgtaaattttgaggaagatat
agagaagagaaagaggatttcctaagagtgggtccatgaaactgttattg
tctgaggattaagaattagttaaatgtcatcacgcaccatcttctgagtg
gagagagcgcccacagtggatcagaaggtgaacatgtggagcaagtgggc
atgtggttggatgcctacactgaagtcatgggtctctgggaactgatctg
gggcacagatacagccttcaactgccacccacatctgctcactggcatgt
tggccaagtcctctggctcggtggcagtcctagggtgtgtagtctggctt
tccctttacagtctgaagcccttgatgccaaacatgatgtgaagctgaag
gggaggggcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38902256_38902960
seq2: B6Ng01-021N12.b_59_763

seq1  AGGATACTGTTGTCTTTTCTCCCTTCACCTCTTCCACTTCCTTAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTGTTGTCTTTTCTCCCTTCACCTCTTCCACTTCCTTAAAAAAA  50

seq1  TAAAAGAAAAAAGAAATGGATGTCTTAAACTGTTTTCAAAACCAATCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAAAAGAAATGGATGTCTTAAACTGTTTTCAAAACCAATCTCA  100

seq1  AATGCCTAAGCCTGTCTTAGCTTCTCAAGTCCCTAGACTATAGGTATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTAAGCCTGTCTTAGCTTCTCAAGTCCCTAGACTATAGGTATGTA  150

seq1  CCACCACATCTGGAAATACCATGTCTTCTGTTCAGCTACCTGGGAAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACATCTGGAAATACCATGTCTTCTGTTCAGCTACCTGGGAAGCTG  200

seq1  AGTAGCTCTCTGAGTACAATTTGGCTAGAACAGGAAGTAGACCTGTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCTCTGAGTACAATTTGGCTAGAACAGGAAGTAGACCTGTGGGA  250

seq1  CTCAGGAGGAAGTCCCTGTCCTTGTCCCTGATTTTACCTTTTGTAGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGAAGTCCCTGTCCTTGTCCCTGATTTTACCTTTTGTAGGTCA  300

seq1  ATGGAATGCTGCTGGATGATCGCCTGGAGCTCTTGTTCCTTTTGTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGCTGCTGGATGATCGCCTGGAGCTCTTGTTCCTTTTGTTCCAG  350

seq1  GACTACAATCTTATGTTCTGCACCTGCTTTTGAAGCTGTCAAGTGATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAATCTTATGTTCTGCACCTGCTTTTGAAGCTGTCAAGTGATCTC  400

seq1  TTCATGAAAAGAAAGCAGACAACGAGCAAATTTTGATATTTCCTCTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAAAGAAAGCAGACAACGAGCAAATTTTGATATTTCCTCTATTA  450

seq1  CTCTCCAAAGGCAGAATGCACATGACTCCTTATATTTCAGGCTGCAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAAGGCAGAATGCACATGACTCCTTATATTTCAGGCTGCAAGTG  500

seq1  TTGTTACAGCCACACTAAGTTTATCTCCGTGTAAAGGCTCCTTGGCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAGCCACACTAAGTTTATCTCCGTGTAAAGGCTCCTTGGCTTTC  550

seq1  AGAAACAGAAGCAGGAAGACCACCCAGGTCTAAGCAATGAGTTCTGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAAGCAGGAAGACCACCCAGGTCTAAGCAATGAGTTCTGTCTT  600

seq1  TGAGTACTCAATAACTTTACAACTCAAATCAGATTGTCCTGCGTAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTCAATAACTTTACAACTCAAATCAGATTGTCCTGCGTAGTTTT  650

seq1  ACTAGAATAAACTTGTGCGTCTGCAGGGGAGGGAGAGAGAGTGAGTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATAAACTTGTGCGTCTGCAGGGGAGGGAGAGAGAGTGAGTGGTG  700

seq1  ATGGA  705
      |||||
seq2  ATGGA  705

seq1: chr2_39072724_39073589
seq2: B6Ng01-021N12.g_69_930 (reverse)

seq1  CCCGCCCCTGCCCCCTTCAGCTTCACATACTTGTTTGGCATCAGGGGCTT  50
      |||||||||  ||||||||||||||||| | |||||||||||| ||||||
seq2  CCCGCCCCT--CCCCTTCAGCTTCACAT-CATGTTTGGCATCAAGGGCTT  47

seq1  CAGACTGTAAAAGGGAAAGCCAGACTACACACCCTAGGACTGCCACCGAG  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGT-AAAGGGAAAGCCAGACTACACACCCTAGGACTGCCACCGAG  96

seq1  CCAGAGGACTTGGCCAACATGCCAGTGAGCAGATGTGGGTGGCAGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGACTTGGCCAACATGCCAGTGAGCAGATGTGGGTGGCAGTTGAA  146

seq1  GGCTGTATCTGTGCCCCAGATCAGTTCCCAGAGACCCATGACTTCAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTATCTGTGCCCCAGATCAGTTCCCAGAGACCCATGACTTCAGTGT  196

seq1  AGGCATCCAACCACATGCCCACTTGCTCCACATGTTCACCTTCTGATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCAACCACATGCCCACTTGCTCCACATGTTCACCTTCTGATCCA  246

seq1  CTGTGGGCGCTCTCTCCACTCAGAAGATGGTGCGTGATGACATTTAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCGCTCTCTCCACTCAGAAGATGGTGCGTGATGACATTTAACTA  296

seq1  ATTCTTAATCCTCAGACAATAACAGTTTCATGGACCCACTCTTAGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAATCCTCAGACAATAACAGTTTCATGGACCCACTCTTAGGAAAT  346

seq1  CCTCTTTCTCTTCTCTATATCTTCCTCAAAATTTACATTCATGGTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCTCTTCTCTATATCTTCCTCAAAATTTACATTCATGGTCTCCC  396

seq1  ATTCTATTCTCTGCCCCCGGCCCCCCAACTCCCTGTTCCCTCTTGACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTCTCTGCCCCCGGCCCCCCAACTCCCTGTTCCCTCTTGACCCT  446

seq1  CAAAATTATAAATATATAGAATATATATTATACATATGGTTGTTGTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATAAATATATAGAATATATATTATACATATGGTTGTTGTTGTT  496

seq1  GGTTTGAGATAGGGTCTCACGTAGTCCAGGTTCTCTACATAGTTGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGATAGGGTCTCACGTAGTCCAGGTTCTCTACATAGTTGAAGAA  546

seq1  GACCTTGTACTTGTGACCCTCCTGACTCTACCTTCTGGTGCTGGTATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTACTTGTGACCCTCCTGACTCTACCTTCTGGTGCTGGTATTAC  596

seq1  AAGCCTTCACCACTATACCTATTTCTGACAGTCATGTCTCACCCCAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCACCACTATACCTATTTCTGACAGTCATGTCTCACCCCAGTCT  646

seq1  ATGATCCATAATGTTGCCAGAACATTATTTTAAAACCTCCCTTTTACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCATAATGTTGCCAGAACATTATTTTAAAACCTCCCTTTTACTGC  696

seq1  CCTTAAAAATCTCTCAAGAGTATTCCTTCAAAATAATCATTCAGACATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAATCTCTCAAGAGTATTCCTTCAAAATAATCATTCAGACATTC  746

seq1  AAATTCCATTCAGACATCTTTAAGATTTTGTCATATTCTTACCACATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCATTCAGACATCTTTAAGATTTTGTCATATTCTTACCACATAAA  796

seq1  ACAGTCTATCTTTAGTCCCATGTGGTGGCCCACACCTTTAATTCTAGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTATCTTTAGTCCCATGTGGTGGCCCACACCTTTAATTCTAGCAC  846

seq1  TCAGGAGACAGAATTC  866
      ||||||||||||||||
seq2  TCAGGAGACAGAATTC  862