BAC Information

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BAC

Clone NameB6Ng01-024L17
Chromosome2 (Build37)17 (Build37)
Map Location 148,460,928 - 148,461,38255,791,043 - 55,791,726
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93
Downstream geneNxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024L17.bB6Ng01-024L17.g
ACCDH856277DH856278
length665938
definitionDH856277|Mus musculus domesticus DNA, BAC clone: B6Ng01-024L17, 5' end.DH856278|Mus musculus domesticus DNA, BAC clone: B6Ng01-024L17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(148,460,928 - 148,461,382)(55,791,043 - 55,791,726)
sequence
gaattctctattttgagaatatgattttataaactttttctgatctgaaa
aagttgaaatcacttagagggtgacttatccatttgtcattaaatctttg
actatgaaatgcctcatgatgaggcccataaactgaagattttttcatca
gttttctggctattgagaggtgtttgattggatcttgagagttaatcagt
tgttttatgtgacaggagaataggagctttttaatttatttttaaaaatt
ttattaggtattttcctcatttacatttccaatgctatcccaaaagtccc
ccatacactccaccccactcccctacccacccactcccacctcttggccc
tggcgttcccctgtactgaggcatataaagtttgcattaccaatgggcct
ctctttccactgatgaccgactaggccatcttctgatacatatgtagcta
gagacaagagctccggtggggtgctggttagttcattttgttgttccatc
tatagggttgcagatccctttagctccttgggtactttctctagttcctc
cattgggggccctgtgatccatccaattgctgactgtgagcatccacttc
tgtgtttgctaggccccggcctagtctcacaagaggcagctatatcaggg
tcctttcagcaaaat
gaattcacacacacacacatacacacacacacacacacacacacacacac
acatacacacacacacacaaatacccaaataagatgcagtgacataaagt
tcacaaagcattcagacttttttcaggaggtggggagctgcccactgcac
tggagtgtggttgataatgaatataattgatttctttcttttttttatta
atttttacactccatattgcattccccaccccacccccaccatccaccct
gactgctccacaccccacatctcctccacaacacccgtttccacatggaa
gcccccaccccccaccccacctgacctctaaactccctggggcctcctgt
ctcttgaaggttaggtgcatcatctctgaatgaacagacctggaagtcct
ctactgtatgtgtgttgggggtctcatatcagctggtgtactgttgtctg
tttggtggtccagtgtttgagagatctcaggggtccagattaattgagac
tgctggtcctcctacaggatcacccttctcctcagcttctttcagccttc
cctaattcaacaacaggggtcagctgcttctgtccattggttgggtgcag
atatctgaatctgactctttcagctgcctgttggtctttcagagggcagt
catgttaggtccctttttgtgagtgctccatagcctcagtaatagtgtca
ggccttgggacctccctttgagctggatcccattttggacttgtcactgg
atcttcttttcctcaggctcctctccatttccatccctgtaattctttca
gacaggaagaatttgggtcagagatgtgactgtgggatggcaaccccatc
ccttcatttgatgttctgtctcctgctgtggtgggcctctatagtccctc
tcctaactgtcagcatttcatctaggccctccctttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_148460928_148461382
seq2: B6Ng01-024L17.b_276_656 (reverse)

seq1  GCCGGGGCCTAGCAAACACAGTCATATATTAGCATATATATATATATATA  50
      |||||||||||||||||||||   |  ||  ||                 
seq2  GCCGGGGCCTAGCAAACACAGAAGTGGAT--GC-----------------  31

seq1  TATATATATATATATATATATATATATATATATATATATATCACAGTCAG  100
                                              ||||||||||
seq2  ----------------------------------------TCACAGTCAG  41

seq1  CTATTGGATGAATCACAGGACCCCCAATGGAAGAGCTAGAGAAAGTACCC  150
      | |||||||| |||||||| ||||||||||| || |||||||||||||||
seq2  CAATTGGATGGATCACAGGGCCCCCAATGGAGGAACTAGAGAAAGTACCC  91

seq1  AAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACT  200
      |||||||||||||| ||||||||||||||| ||||||||||| |||||||
seq2  AAGGAGCTAAAGGGATCTGCAACCCTATAGATGGAACAACAAAATGAACT  141

seq1  AACCAGTACCCCCACACACACCCCCAGAGCTCATGTCTCTAGCTGCATAT  250
      ||||||          ||| || || |||||| ||||||||||| |||||
seq2  AACCAG----------CACCCCACCGGAGCTCTTGTCTCTAGCTACATAT  181

seq1  GTGTCATAAGATAGCCTAGTCGGCCATCATTGGAAAGAGAGTCCCATTGG  300
      || ||| ||||| |||||||||| ||||| ||||||||||| ||||||||
seq2  GTATCAGAAGATGGCCTAGTCGGTCATCAGTGGAAAGAGAGGCCCATTGG  231

seq1  TATTGCAAACTTTATATGCTTCAGTACAGGGGAACGCCAGGGCCAAGAAG  350
      || |||||||||||||||| |||||||||||||||||||||||||||| |
seq2  TAATGCAAACTTTATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAGG  281

seq1  TGGGAGTGGGTAGGTAGGGGAGTTTTTTTTGGGGGGGGGAGGGTATGGGG  400
      ||||||||||| |||||||||||         |||| |||| ||||||||
seq2  TGGGAGTGGGTGGGTAGGGGAGT---------GGGGTGGAGTGTATGGGG  322

seq1  GACTTTTGGGATAGCATTGGAAATGTAAATGAAGAAAATACATAAT----  446
      |||||||||||||||||||||||||||||||| |||||||| ||||    
seq2  GACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAAA  372

seq1  TTTTTAAAA  455
      |||||||||
seq2  TTTTTAAAA  381

seq1: chr17_55791043_55791726
seq2: B6Ng01-024L17.g_70_753

seq1  GAATTCACACACACACACATACACACACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACACACACATACACACACACACACACACACACACACACAC  50

seq1  ACATACACACACACACACAAATACCCAAATAAGATGCAGTGACATAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACACACACACAAATACCCAAATAAGATGCAGTGACATAAAGT  100

seq1  TCACAAAGCATTCAGACTTTTTTCAGGAGGTGGGGAGCTGCCCACTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGCATTCAGACTTTTTTCAGGAGGTGGGGAGCTGCCCACTGCAC  150

seq1  TGGAGTGTGGTTGATAATGAATATAATTGATTTCTTTCTTTTTTTTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTGGTTGATAATGAATATAATTGATTTCTTTCTTTTTTTTATTA  200

seq1  ATTTTTACACTCCATATTGCATTCCCCACCCCACCCCCACCATCCACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACACTCCATATTGCATTCCCCACCCCACCCCCACCATCCACCCT  250

seq1  GACTGCTCCACACCCCACATCTCCTCCACAACACCCGTTTCCACATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCCACACCCCACATCTCCTCCACAACACCCGTTTCCACATGGAA  300

seq1  GCCCCCACCCCCCACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACCCCCCACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCTGT  350

seq1  CTCTTGAAGGTTAGGTGCATCATCTCTGAATGAACAGACCTGGAAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAAGGTTAGGTGCATCATCTCTGAATGAACAGACCTGGAAGTCCT  400

seq1  CTACTGTATGTGTGTTGGGGGTCTCATATCAGCTGGTGTACTGTTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTATGTGTGTTGGGGGTCTCATATCAGCTGGTGTACTGTTGTCTG  450

seq1  TTTGGTGGTCCAGTGTTTGAGAGATCTCAGGGGTCCAGATTAATTGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGTCCAGTGTTTGAGAGATCTCAGGGGTCCAGATTAATTGAGAC  500

seq1  TGCTGGTCCTCCTACAGGATCACCCTTCTCCTCAGCTTCTTTCAGCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCCTCCTACAGGATCACCCTTCTCCTCAGCTTCTTTCAGCCTTC  550

seq1  CCTAATTCAACAACAGGGGTCAGCTGCTTCTGTCCATTGGTTGGGTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTCAACAACAGGGGTCAGCTGCTTCTGTCCATTGGTTGGGTGCAG  600

seq1  ATATCTGAATCTGACTCTTTCAGCTGCCTGTTGGTCTTTCAGAGGGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGAATCTGACTCTTTCAGCTGCCTGTTGGTCTTTCAGAGGGCAGT  650

seq1  CATGTTAGGTCCCTTTTTGTGAGTGCTCCATAGC  684
      ||||||||||||||||||||||||||||||||||
seq2  CATGTTAGGTCCCTTTTTGTGAGTGCTCCATAGC  684