BAC Information

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BAC

Clone NameB6Ng01-028B20
Chromosome2 (Build37)3 (Build37)
Map Location 142,776,691 - 142,777,698116,866,516 - 116,867,506
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028B20.bB6Ng01-028B20.g
ACCDH858678DH858679
length951986
definitionDH858678|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B20, 5' end.DH858679|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,691 - 142,777,698)(116,866,516 - 116,867,506)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctccatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctgcttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaaactttaggtcaggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccaagatattttatattat
t
gaattcatcatgggagacaggatgcaggagcaagaagctggatgatcaca
ctgcatcagcatctcagcaaactgcaactgaacatctaatgttgtccctg
aaagtccaaaggcctgtccttagggacatactttcgcagcaaggctctgc
cttacaaaggcttcataaccatcccaaactgcatcagcatcagctaggga
tcaagtgttctgacacatgagtggatggggaacagcttatcatttaacta
caacaggatgtgtggatgagatgatgaacaaagaagcctggcatccttta
agcccggtctgagtgctagctgttatcatcataggccatgatggttaata
agcctagagatgaggtattgtcaatcaggccatttaaacaatggctgcct
aggggaaagtaagcatgctcaatgtcaggcatattgtatgttatctcccc
tcaaacatcatattgcacatacctggagctagtaacacgtctgcattcgt
cactttcatgttgctatgataaagcagcgtgatgaaaagcaacttaaaga
agaaagggtctattttcccttatggttccagtggaatagagaccacagtg
gtgcagagtacatggcagcagaagcaggaagatcatatttcatctgtaca
cagggagctcagaggacaagacctggaagtggggcaggactatgaactct
caaagtttgctctcagagacacacaccttcaagcaaagctgcacttcttt
taggtaccacaacctccccaaagagtaccaccaattgggaccagatgttc
aaatgtatggacatttctatgtgggacatttctcattcaaaccaccacaa
aatcttgtcataaagggttatagtttgatgttgaatgtccccacaaaacc
atggtgtaaaggatatctccaccttgtggcactgttagcaggtgatgtaa
ctttaagggaagggacttatggaaggaagttggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776691_142777698
seq2: B6Ng01-028B20.b_40_587 (reverse)

seq1  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCAT  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCAT  100

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGG  150
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGC  150

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGGAACTTCACATAAAAGCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  300

seq1  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATGGAGAATTGACAAATGGGACCTAATG  350

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGA  550
      |||||||||||||||||||||||||||||| ||            ||| |
seq2  TCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CTGAACA  540

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  600
      ||||    |||                                       
seq2  AAGA----ATTC--------------------------------------  548

seq1  AGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  650
                                                        
seq2  --------------------------------------------------  548

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  700
                                                        
seq2  --------------------------------------------------  548

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  750
                                                        
seq2  --------------------------------------------------  548

seq1  CTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  800
                                                        
seq2  --------------------------------------------------  548

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATA  850
                                                        
seq2  --------------------------------------------------  548

seq1  AGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAA  900
                                                        
seq2  --------------------------------------------------  548

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  950
                                                        
seq2  --------------------------------------------------  548

seq1  CCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  1000
                                                        
seq2  --------------------------------------------------  548

seq1  AAGAATTC  1008
              
seq2  --------  548

seq1: chr3_116866516_116867506
seq2: B6Ng01-028B20.g_65_1050

seq1  GAATTCATCATGGGAGACAGGATGCAGGAGCAAGAAGCTGGATGATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGGGAGACAGGATGCAGGAGCAAGAAGCTGGATGATCACA  50

seq1  CTGCATCAGCATCTCAGCAAACTGCAACTGAACATCTAATGTTGTCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAGCATCTCAGCAAACTGCAACTGAACATCTAATGTTGTCCCTG  100

seq1  AAAGTCCAAAGGCCTGTCCTTAGGGACATACTTTCGCAGCAAGGCTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAAAGGCCTGTCCTTAGGGACATACTTTCGCAGCAAGGCTCTGC  150

seq1  CTTACAAAGGCTTCATAACCATCCCAAACTGCATCAGCATCAGCTAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAGGCTTCATAACCATCCCAAACTGCATCAGCATCAGCTAGGGA  200

seq1  TCAAGTGTTCTGACACATGAGTGGATGGGGAACAGCTTATCATTTAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTTCTGACACATGAGTGGATGGGGAACAGCTTATCATTTAACTA  250

seq1  CAACAGGATGTGTGGATGAGATGATGAACAAAGAAGCCTGGCATCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGATGTGTGGATGAGATGATGAACAAAGAAGCCTGGCATCCTTTA  300

seq1  AGCCCGGTCTGAGTGCTAGCTGTTATCATCATAGGCCATGATGGTTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGGTCTGAGTGCTAGCTGTTATCATCATAGGCCATGATGGTTAATA  350

seq1  AGCCTAGAGATGAGGTATTGTCAATCAGGCCATTTAAACAATGGCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGAGATGAGGTATTGTCAATCAGGCCATTTAAACAATGGCTGCCT  400

seq1  AGGGGAAAGTAAGCATGCTCAATGTCAGGCATATTGTATGTTATCTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAGTAAGCATGCTCAATGTCAGGCATATTGTATGTTATCTCCCC  450

seq1  TCAAACATCATATTGCACATACCTGGAGCTAGTAACACGTCTGCATTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATCATATTGCACATACCTGGAGCTAGTAACACGTCTGCATTCGT  500

seq1  CACTTTCATGTTGCTATGATAAAGCAGCGTGATGAAAAGCAACTTAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCATGTTGCTATGATAAAGCAGCGTGATGAAAAGCAACTTAAAGA  550

seq1  AGAAAGGGTCTATTTTCCCTTATGGTTCCAGTGGAATAGAGACCACAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGTCTATTTTCCCTTATGGTTCCAGTGGAATAGAGACCACAGTG  600

seq1  GTGCAGAGTACATGGCAGCAGAAGCAGGAAGATCATATTTCATCTGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGTACATGGCAGCAGAAGCAGGAAGATCATATTTCATCTGTACA  650

seq1  CAGGGAGCTCAGAGGACAAGACCTGGAAGTGGGGCAGGACTATGAACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCTCAGAGGACAAGACCTGGAAGTGGGGCAGGACTATGAACTCT  700

seq1  CAAAGTTTGCTCTCAGAGACACACACCTTCAAGCAAAGCTGCACTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTGCTCTCAGAGACACACACCTTCAAGCAAAGCTGCACTTCTTT  750

seq1  TAGGTACCACAACCTCCCCAAAGAGTACCACCAATTGGGACCAGATGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACCACAACCTCCCCAAAGAGTACCACCAATTGGGACCAGATGTTC  800

seq1  AAATGTATGGACATTTCTATGTGGGACATTTCTCATTCAAACCACCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATGGACATTTCTATGTGGGACATTTCTCATTCAAACCACCACAA  850

seq1  AATCCTTGTCATAAAGGGTTATAGTTTTGATGTTGAATGTCCCCACAAAA  900
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAT-CTTGTCATAAAGGGTTATAG-TTTGATGTTGAATGTCCCCACAAAA  898

seq1  CCATGTGTTAAAGGATATCTCCACCTTGTGGCACTGTTAGCAGGTGATGT  950
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGTAAAGGATATCTCCACCTTGTGGCACTGTTAGCAGGTGATGT  948

seq1  AACTTTTAGGGAAGGGGACCTAGTGGAAGGAAGTTTGGTGT  991
      |||||| |||||| ||||| || |||||||||| |||||||
seq2  AACTTTAAGGGAA-GGGACTTA-TGGAAGGAAG-TTGGTGT  986