BAC Information

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BAC

Clone NameB6Ng01-028D10
ChromosomeY (Build37)2 (Build37)
Map Location 1,120,586 - 1,120,85355,819,427 - 55,820,509
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028D10.bB6Ng01-028D10.g
ACCDH858752DH858753
length9611,081
definitionDH858752|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D10, 5' end.DH858753|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,120,853)(55,819,427 - 55,820,509)
sequence
gaattcctgatctttccaagacttttattatgaatgggtgttggattttg
tcaaatgctttctcagcatctaatgagatgatcatgtgttttttgtctct
gagtttgtttatatagtggattatgttgatggatttctgtatattaaacc
atccctgcatccttccatgaagtctacgtggtcatgatggatgactgctt
tgatgtgttcttggattctatttgtgtggattttttttttgaattaattt
tttattaggtattttcctcatttacatttccaatgctatccaaattgccc
ccaatacaccccccccactctcctacccacccactcccactttttggccc
tggcgttcccctgtactggggcatataacgattgcaagtccaatgggcct
ctatttccagtgatggccgactaggccatcttttgatacatatgcagcta
cagtcaagagctctggggtactggttagttcataatgttgttccacctat
agggttgcagatccctttagctccttgggtactttctctagctccatcat
tgggggccctgtgatccatccaatagctgactgagagcatctacttcagt
gtttgctaggccccggcattgtctcacaagagacagctatatctgggtca
tttcagcaaaatcttgctagtgtatgcaatggtgtcagcgtttggaagct
gattatgcgatggatccctggatatggcagtctttagatggtccatcctt
tcgtctcagctccaaactttgtctctgtaactactaccataggtgttttg
ttcccaattctaagaaagggcatagtgtccacactttggtcttcgttctt
cttgagtttcaggcgtttaacaaattgtatcttatatcttgagtatccta
agtttttttggctaatatccacttatcagtgagtacatattgtgtgagtt
tctttgtgatt
gaattcatcccagcttctggctattataaataaggctgctatggacatag
atgagcatgtgtccttgttatatgttggagcatattttgggtataaacca
aggagtggtatgtttgagtcctcaggtagttttctgaggagctgccagac
tgattttcagaatggttataccaggttgcaatctcaccattctagtatgt
gcttctcagttataatttttatatacttccatttaaaacttatgctattc
tttatgtttatctttattctgtcttctatttattgaaattctactcatct
ttaaagaaaatattagtgttacagttgtgtggctttctatgtgattaatt
aaattatagcttataatactttgttctttttcctattaagattcattgga
ttagttatggttttttcagatgatgaattatagacttaatagttgagaga
tatttaaaacatttctgttcaaacctcaaccacaatttaatgttgacaaa
caagaccatggttagaaaagactcttcaagttaaggactcagttatggta
caactgttctcactactgaatcaatcaagatatctgtgctgaacgtgtgt
atccttctaacaagcaggcaacagatttaagagttcacacaaatacccta
agattatttctttggggtaatgattaccagactttaagaaagcaacaact
cataattagaatctagtttcaatgataaagtgataagcaggaagatgaaa
tgacacacaatataagatctacaataggtatgcctgcagatcttctgtaa
ccttgccttatgaatccagaatgcatctgcttaccagctcataaatatac
tcattgaccaggaagttctcctaagattccacgtacagaggtctcattgg
gaacttcattatatacacaagattgagtaaataatagtccagatgaaata
attcaatctctagacatacctcagagtggattggctcaaaatccaaacag
attccgaattaatttttctgtttttcaggtgcattatctaaattgatatt
gaaggggcctctggagttatggttggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1120853
seq2: B6Ng01-028D10.b_274_542

seq1  -TTTTTTTT---TCCATTTTTTATTAGGTATTTAACTCATTTACATTTCC  46
       ||||||||   |  ||||||||||||||||||  |||||||||||||||
seq2  TTTTTTTTTGAATTAATTTTTTATTAGGTATTTTCCTCATTTACATTTCC  50

seq1  AATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCC  96
      |||||||| |||||   |||||| || ||||| ||||||||| ||| |||
seq2  AATGCTAT-CCAAATTGCCCCCA-ATACACCC-CCCCCACTCTCCTACCC  97

seq1  ACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAA  146
      |||||||||| ||||||||||||||  |||||||||||||||||||||||
seq2  ACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAA  147

seq1  AGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCA  196
       | ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CGATTGCAAGTCCAATGGGCCTCTATTTCCAGTGATGGCCGACTAGGCCA  197

seq1  TCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAG  246
      |||||||||| ||||||||||| |||||||||||| ||||||||||||||
seq2  TCTTTTGATACATATGCAGCTACAGTCAAGAGCTCTGGGGTACTGGTTAG  247

seq1  CTCATAACGTTGTTCCACCTAT  268
       |||||| ||||||||||||||
seq2  TTCATAATGTTGTTCCACCTAT  269

seq1: chr2_55819427_55820509
seq2: B6Ng01-028D10.g_66_1146

seq1  GAATTCATCCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGGACATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGGACATAG  50

seq1  ATGAGCATGTGTCCTTGTTATATGTTGGAGCATATTTTGGGTATAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATGTGTCCTTGTTATATGTTGGAGCATATTTTGGGTATAAACCA  100

seq1  AGGAGTGGTATGTTTGAGTCCTCAGGTAGTTTTCTGAGGAGCTGCCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGTATGTTTGAGTCCTCAGGTAGTTTTCTGAGGAGCTGCCAGAC  150

seq1  TGATTTTCAGAATGGTTATACCAGGTTGCAATCTCACCATTCTAGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCAGAATGGTTATACCAGGTTGCAATCTCACCATTCTAGTATGT  200

seq1  GCTTCTCAGTTATAATTTTTATATACTTCCATTTAAAACTTATGCTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAGTTATAATTTTTATATACTTCCATTTAAAACTTATGCTATTC  250

seq1  TTTATGTTTATCTTTATTCTGTCTTCTATTTATTGAAATTCTACTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTATCTTTATTCTGTCTTCTATTTATTGAAATTCTACTCATCT  300

seq1  TTAAAGAAAATATTAGTGTTACAGTTGTGTGGCTTTCTATGTGATTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAATATTAGTGTTACAGTTGTGTGGCTTTCTATGTGATTAATT  350

seq1  AAATTATAGCTTATAATACTTTGTTCTTTTTCCTATTAAGATTCATTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAGCTTATAATACTTTGTTCTTTTTCCTATTAAGATTCATTGGA  400

seq1  TTAGTTATGGTTTTTTCAGATGATGAATTATAGACTTAATAGTTGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATGGTTTTTTCAGATGATGAATTATAGACTTAATAGTTGAGAGA  450

seq1  TATTTAAAACATTTCTGTTCAAACCTCAACCACAATTTAATGTTGACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAACATTTCTGTTCAAACCTCAACCACAATTTAATGTTGACAAA  500

seq1  CAAGACCATGGTTAGAAAAGACTCTTCAAGTTAAGGACTCAGTTATGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCATGGTTAGAAAAGACTCTTCAAGTTAAGGACTCAGTTATGGTA  550

seq1  CAACTGTTCTCACTACTGAATCAATCAAGATATCTGTGCTGAACGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTCTCACTACTGAATCAATCAAGATATCTGTGCTGAACGTGTGT  600

seq1  ATCCTTCTAACAAGCAGGCAACAGATTTAAGAGTTCACACAAATACCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTAACAAGCAGGCAACAGATTTAAGAGTTCACACAAATACCCTA  650

seq1  AGATTATTTCTTTGGGGTAATGATTACCAGACTTTAAGAAAGCAACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTCTTTGGGGTAATGATTACCAGACTTTAAGAAAGCAACAACT  700

seq1  CATAATTAGAATCTAGTTTCAATGATAAAGTGATAAGCAGGAAGATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTAGAATCTAGTTTCAATGATAAAGTGATAAGCAGGAAGATGAAA  750

seq1  TGACACACAATATAAGATCTACAATAGGTATGCCTGCAGATCTTCTGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACAATATAAGATCTACAATAGGTATGCCTGCAGATCTTCTGTAA  800

seq1  CCTTGCCTTATGAATCCAGAATGCATCTGCTTACCAGCTCATAAATATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTTATGAATCCAGAATGCATCTGCTTACCAGCTCATAAATATAC  850

seq1  TCATTGACCAGGAAGTTCTCCTAAGATTCCACGTACAGAGGTCTCATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGACCAGGAAGTTCTCCTAAGATTCCACGTACAGAGGTCTCATTGG  900

seq1  GAACTTCATTATATACACAAGATTGAGTAAATAATAGTCCAGATGAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCATTATATACACAAGATTGAGTAAATAATAGTCCAGATGAAATA  950

seq1  ATTCAATCTCTAGACATACCTCAGAGTGGATTGGCTCAAAAATCCAAAAC  1000
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  ATTCAATCTCTAGACATACCTCAGAGTGGATTGGCTC-AAAATCC-AAAC  998

seq1  AGAATTCCGAATTTAGTCTTCTGTTATTCAGGTGCATTATCTAAAATGAT  1050
      || |||||||||| | | ||||||| ||||||||||||||||||| ||||
seq2  AG-ATTCCGAATTAATTTTTCTGTTTTTCAGGTGCATTATCTAAATTGAT  1047

seq1  ATTGAAGGGG-CTCTTGAGTTATGGTTGGAAGGA  1083
      |||||||||| |||| ||||||||||||||||||
seq2  ATTGAAGGGGCCTCTGGAGTTATGGTTGGAAGGA  1081