BAC Information

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BAC

Clone NameB6Ng01-028I02
Chromosome2 (Build37)8 (Build37)
Map Location 142,776,402 - 142,777,69858,125,498 - 58,126,111
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028I02.bB6Ng01-028I02.g
ACCDH858964DH858965
length911617
definitionDH858964|Mus musculus domesticus DNA, BAC clone: B6Ng01-028I02, 5' end.DH858965|Mus musculus domesticus DNA, BAC clone: B6Ng01-028I02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,402 - 142,777,698)(58,125,498 - 58,126,111)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttctgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgatttgca
ttcttctacacggtaacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accatagctgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtctggtatggtgattccaccagaagttctttt
atccttgagaagactttttgccaacctaggttttttgttattccagacga
atttgcaaattggtccttccaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagtatatattttctat
aagtagtaatttttatctttttttaaaaaatcacttctaatgcactacaa
gtagcataatg
gaattcctgagtgagccaatgctttggtttctatatctatacctgtttat
tcttggagacttttccatttatttttaatttttttctgtcttattctgat
gtgtttgttttatcctattttttgtttagtattatactatagaagtcagt
ttgttttttaatgacatatagaaaggggggcagatccagatgctagggta
tgtgtgtgtgtggatgaactgtagaagtggggtgaggggaacccataatc
agagcacagtatataaacacaatctattttcagtaaaataaaaaccagga
atataactgttctactgcacattttagattcaagaatcagctgtgtagca
tcgagtgtcttccatttctgaagaacaagagactgtgtttcttaataatc
aaagatacatggtacttttactcctcgtgaatgttcttaagaaatactct
gctataaatatttttgtttattttcctgttatataggctccctccatact
atgtacataatttttttctgtacttttcctcatatggtttccatggttac
aaattattttctttaacaaatagcagtattatagaaacatttgcagtgaa
tcaaagtcaagaaacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776402_142777698
seq2: B6Ng01-028I02.b_44_879 (reverse)

seq1  CTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTT  50

seq1  GCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTC  100

seq1  AATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAAC  150
      |||||||||||||||| |||||| |||||||||||||| |||||||||||
seq2  AATTCTTCAACGAATTGGAAGGACCAATTTGCAAATTCGTCTGGAATAAC  150

seq1  AAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGG  200
      |||||||||||| | ||||||||||||||||||||||||||||| |||||
seq2  AAAAAACCTAGGTTGGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGG  200

seq1  TGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAA  250
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  TGGAATCACCATACCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAA  250

seq1  AAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGA  300

seq1  ATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGA  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTGAAGACCCAGAAATGAACCCACACAGCTATGGTCACTTGATCTTCGA  350

seq1  CAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATT  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATT  400

seq1  GGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCA  450
      ||||||||||||||||||||||| | ||||||||||||  ||||||||||
seq2  GGTGCTGGCACAACTGGTTGTTACCGTGTAGAAGAATGCAAATCGATCCA  450

seq1  TACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCA  500

seq1  CATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCC  550
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCC  550

seq1  TTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCT  600
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCT  600

seq1  TGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAG  650

seq1  TTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAG  700

seq1  ATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCC  750

seq1  AACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCC  800

seq1  CATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCATT  850
      |||| |||||||||||||| ||            ||| |||||    |||
seq2  CATT-AAAAATGGGGCTCAGAA----------CTGAACAAAGA----ATT  835

seq1  TTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCG  900
                                                        
seq2  C-------------------------------------------------  836

seq1  AATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCA  950
                                                        
seq2  --------------------------------------------------  836

seq1  AGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTG  1000
                                                        
seq2  --------------------------------------------------  836

seq1  GGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAG  1050
                                                        
seq2  --------------------------------------------------  836

seq1  AGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGA  1100
                                                        
seq2  --------------------------------------------------  836

seq1  AACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGA  1150
                                                        
seq2  --------------------------------------------------  836

seq1  CCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGG  1200
                                                        
seq2  --------------------------------------------------  836

seq1  ACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAAT  1250
                                                        
seq2  --------------------------------------------------  836

seq1  CAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1297
                                                     
seq2  -----------------------------------------------  836

seq1: chr8_58125498_58126111
seq2: B6Ng01-028I02.g_66_681

seq1  GAATTCCTGAGTGAGCCAATGCTTTGGTTTCTATATCTATACCTGTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTGAGCCAATGCTTTGGTTTCTATATCTATACCTGTTTAT  50

seq1  TCTTGGAGACTTTTCCATTTATTTTTAATTTTTTTCTGTCTTATTCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGACTTTTCCATTTATTTTTAATTTTTTTCTGTCTTATTCTGAT  100

seq1  GTGTTTGTTTTATCCTATTTTTTGTTTAGTATTATACTATAGAAGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTTTTATCCTATTTTTTGTTTAGTATTATACTATAGAAGTCAGT  150

seq1  TTGTTTTTTAATGACATATAGAAAGGGGGGCAGATCCAGATGCTAGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTAATGACATATAGAAAGGGGGGCAGATCCAGATGCTAGGGTA  200

seq1  TGTGTGTGTGTGGATGAACTGTAGAAGTGGGGTGAGGGGAACCCATAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGGATGAACTGTAGAAGTGGGGTGAGGGGAACCCATAATC  250

seq1  AGAGCACAGTATATAAACACAATCTATTTTCAGTAAAATAAAAACCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAGTATATAAACACAATCTATTTTCAGTAAAATAAAAACCAGGA  300

seq1  ATATAACTGTTCTACTGCACATTTTAGATTCAAGAATCAGCTGTGTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTGTTCTACTGCACATTTTAGATTCAAGAATCAGCTGTGTAGCA  350

seq1  TCGAGTGTCTTCCATTTCTGAAGAACAAGAGACTGTGTTTCTTAATAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGTCTTCCATTTCTGAAGAACAAGAGACTGTGTTTCTTAATAATC  400

seq1  AAAGATACATGGTACTTTTACTCCTCGTGAATGTTCTTAAGAAATACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACATGGTACTTTTACTCCTCGTGAATGTTCTTAAGAAATACTCT  450

seq1  GCTATAAATATTTTTGTTTATTTTCCTGTTATATAGGCTCCCTCCATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAATATTTTTGTTTATTTTCCTGTTATATAGGCTCCCTCCATACT  500

seq1  ATGTACATAATTTTTTTCTGTACTTTTCCTCATATGGTTTCCATGGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATAATTTTTTTCTGTACTTTTCCTCATATGGTTTCCATGGTTAC  550

seq1  AAATTATTTTC-TTAACAATTAGCAGTATTATAG-AACATTTGCAATGAA  598
      ||||||||||| ||||||| |||||||||||||| |||||||||| ||||
seq2  AAATTATTTTCTTTAACAAATAGCAGTATTATAGAAACATTTGCAGTGAA  600

seq1  TCAAATTCAAAAAACG  614
      ||||| |||| |||||
seq2  TCAAAGTCAAGAAACG  616