BAC Information

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BAC

Clone NameB6Ng01-029C05
Chromosome8 (Build37)2 (Build37)
Map Location 48,629,879 - 48,630,376173,884,182 - 173,885,058
singlet/doubletsingletsinglet
Overlap geneRwdd4a
Upstream geneMlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik, D030016E14Rik
Downstream geneLOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029C05.bB6Ng01-029C05.g
ACCDH859423DH859424
length732977
definitionDH859423|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C05, 5' end.DH859424|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,629,879 - 48,630,376)(173,884,182 - 173,885,058)
sequence
gaattcttttctgaagacttattgtgactgaaattaattttagggaaaaa
aatccaaccactatcctaagatggagcgatgtgtcacactgcaagtggga
actctttcacatagctttttgatgtacataggcaaataaaacccacatgt
tacagtgttcaggaaggacaatgtgctttgtctatttttattgtgggccg
gagtgagaatatttataattgctctgtgagtcattcttttgctcctcaat
aaatgcagtatttttgtactgtgaccaatggggctctgactccaaagctc
taccaatagaaagatggctccttgattaaggacactgactgctcttccag
aggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctg
taatgggatctgatgccctcttcagggggggtccgaatacacctacgatg
aactttcactgtgtataaatatatatatgtatctatatatttttatatat
atggatgtaacaacaacaacaaaagcaaaaacatcatcctaagtgaggta
actcagaccagaaagacaaacatggtacatggtacttgaggtggatatta
gcttctaattaaatgaacatcaagctacaatttgtagacccagagaggtt
aggtaaagaaagaggagggctctaggaaggattcatgagtctccccagga
agggaaagtagattttgtgggtggatggggta
gaattccctcaacgtcggtaccggaaaccggggtcgtggcggtgatggca
gggagagttgagtttaagcgaccatctccgggaagatccggaggggggag
gggctcaaagtctctacctctttctcctacacagcatctatgcagagcca
tgtgtttccggagtctttcctactatcaccacttttctcaaaaaaggcct
tgggtaaacatgtgtgtgccatggccttgcagtgagtaagtctcagtggt
cagtgggtccagtggcatgctccccacagtgtggaggtgcttccagcctt
gagatgacaagagcttcttattggaagcagccaacagcaagacactcacg
ttgtcagtggggtggttttgcccccaggagccatctgcaacatctggagc
ctttgggactgcacaatgtgtagatcatgctgtagagattcaatggtcaa
gggctgagatgccagaacccctgtctctctcaaagtgtctacctctttct
cctacacagcatctacacagagccatgtgttttccatgtggtggtctcaa
gagccaccagcccctggcatgggataccctgaactacagagatgctattc
tggcctgctttctccccagcatcctccactgaattcccttgggctccaga
aatgtccacacgcacccacaacacaaactggccaaaagagccccattacc
tttcttcctcactgaaagtcctattttatccctccacacttagcctgtgt
gccttaatgacaaaatcgagttgtaagagagtacagtctttcctgccatc
attccggtgggaggagagagtgaagtcacttgacaatgcaccaatcaaag
acaaaatgcatatcaagatgggtgggaaggaacaagggaggagggcgagc
tggagaagaggaggagtccctgctgagtcttctcttctggccttaggttt
ggcctgcatgcgctgtctagagttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_48629879_48630376
seq2: B6Ng01-029C05.b_41_542 (reverse)

seq1  --ATATAT----ATATATATATATATATATATATATATACACAGTGTAAG  44
        ||||||    ||||||| ||| |||||||||| ||||||||||| |||
seq2  ATATATATAAAAATATATAGATACATATATATATTTATACACAGTGAAAG  50

seq1  TACACTGTAGCTGTCTTCAGACACCCCCAGAAGAGGGCATCAGATCCCAT  94
      | ||  |||| ||| ||| ||| ||||| |||||||||||||||||||||
seq2  TTCATCGTAGGTGTATTCGGACCCCCCCTGAAGAGGGCATCAGATCCCAT  100

seq1  TACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGAC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGAC  150

seq1  CTCTGGAAGAGCAGTCAGTGCTCTTAATCACTGAGCCATCTCTCTATTCT  194
      ||||||||||||||||||||  ||||||||  ||||||||| ||||||  
seq2  CTCTGGAAGAGCAGTCAGTGTCCTTAATCAAGGAGCCATCTTTCTATTGG  200

seq1  TGGAGCATTTGAGTCAGAGCCCCATTGGTCACAGTACAAAAATACTGCAT  244
      | |||| || ||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTTTGGAGTCAGAGCCCCATTGGTCACAGTACAAAAATACTGCAT  250

seq1  TTATTGCTACTTG-GAAAGAATGACTCACAGAGCAATTATAAATATTCTC  293
      ||||||  |   |  |||||||||||||||||||||||||||||||||||
seq2  TTATTG--AGGAGCAAAAGAATGACTCACAGAGCAATTATAAATATTCTC  298

seq1  ACTGAGGGACATTAGAAAAATAGACAAAGCACATTGTCCTACCTGAACAC  343
      |||  ||  ||  | ||||||||||||||||||||||||| |||||||||
seq2  ACTCCGGCCCACAATAAAAATAGACAAAGCACATTGTCCTTCCTGAACAC  348

seq1  TGTAACATGTGGGTTTTATTTGCCTATGTACATCTAAAAGCTATGTGAAA  393
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTAACATGTGGGTTTTATTTGCCTATGTACATCAAAAAGCTATGTGAAA  398

seq1  TAGTTCCCACTTGCAGTCTGACACATCGCTCCATCTTAGTATAGTTGTTG  443
       |||||||||||||||| ||||||||||||||||||||| ||||| ||||
seq2  GAGTTCCCACTTGCAGTGTGACACATCGCTCCATCTTAGGATAGTGGTTG  448

seq1  GATTTTTTTCCCTATAATTAACTTAATTATACAATAAGTCTTCAGAAAAG  493
      |||||||||||||| |||||| || | |  ||||||||||||||||||||
seq2  GATTTTTTTCCCTAAAATTAATTTCAGT-CACAATAAGTCTTCAGAAAAG  497

seq1  AATTC  498
      |||||
seq2  AATTC  502

seq1: chr2_173884182_173885058
seq2: B6Ng01-029C05.g_167_1040

seq1  CTCAAAGTCTCTACCTCTTTCTCCTACACAGCATCTATGCAGAGCCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTCTCTACCTCTTTCTCCTACACAGCATCTATGCAGAGCCATGT  50

seq1  GTTTCCGGAGTCTTTCCTACTATCACCACTTTTCTCAAAAAAGGCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCGGAGTCTTTCCTACTATCACCACTTTTCTCAAAAAAGGCCTTGG  100

seq1  GTAAACATGTGTGTGCCATGGCCTTGCAGTGAGTAAGTCTCAGTGGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATGTGTGTGCCATGGCCTTGCAGTGAGTAAGTCTCAGTGGTCAG  150

seq1  TGGGTCCAGTGGCATGCTCCCCACAGTGTGGAGGTGCTTCCAGCCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCAGTGGCATGCTCCCCACAGTGTGGAGGTGCTTCCAGCCTTGAG  200

seq1  ATGACAAGAGCTTCTTATTGGAAGCAGCCAACAGCAAGACACTCACGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGAGCTTCTTATTGGAAGCAGCCAACAGCAAGACACTCACGTTG  250

seq1  TCAGTGGGGTGGTTTTGCCCCCAGGAGCCATCTGCAACATCTGGAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGGTGGTTTTGCCCCCAGGAGCCATCTGCAACATCTGGAGCCTT  300

seq1  TGGGACTGCACAATGTGTAGATCATGCTGTAGAGATTCAATGGTCAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGCACAATGTGTAGATCATGCTGTAGAGATTCAATGGTCAAGGG  350

seq1  CTGAGATGCCAGAACCCCTGTCTCTCTCAAAGTGTCTACCTCTTTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCCAGAACCCCTGTCTCTCTCAAAGTGTCTACCTCTTTCTCCT  400

seq1  ACACAGCATCTACACAGAGCCATGTGTTTTCCATGTGGTGGTCTCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCATCTACACAGAGCCATGTGTTTTCCATGTGGTGGTCTCAAGAG  450

seq1  CCACCAGCCCCTGGCATGGGATACCCTGAACTACAGAGATGCTATTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCCCCTGGCATGGGATACCCTGAACTACAGAGATGCTATTCTGG  500

seq1  CCTGCTTTCTCCCCAGCATCCTCCACTGAATTCCCTTGGGCTCCAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTCTCCCCAGCATCCTCCACTGAATTCCCTTGGGCTCCAGAAAT  550

seq1  GTCCACACGCACCCACAACACAAACTGGCCAAAAGAGCCCCATTACCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACACGCACCCACAACACAAACTGGCCAAAAGAGCCCCATTACCTTT  600

seq1  CTTCCTCACTGAAAGTCCTATTTTATCCCTCCACACTTAGCCTGTGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCACTGAAAGTCCTATTTTATCCCTCCACACTTAGCCTGTGTGCC  650

seq1  TTAATGACAAAATCGAGTTGTAAGAGAGTACAGTCTTTCCTGCCATCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACAAAATCGAGTTGTAAGAGAGTACAGTCTTTCCTGCCATCATT  700

seq1  CCGGT-GGAGGAGAGAGTGAAGTCACTTGACAATGCACCAATCAAAGACA  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCGGTGGGAGGAGAGAGTGAAGTCACTTGACAATGCACCAATCAAAGAC-  749

seq1  AAAATGCATATCAAGATGGGTGGGAAGGAACAAGGGAGGAGGGCGAGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCATATCAAGATGGGTGGGAAGGAACAAGGGAGGAGGGCGAGCTG  799

seq1  GAGAAGAGGAGGAGTCCCTGCTGAGTCTTCTCTTCTGGCCTTCAGGTTTG  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGAAGAGGAGGAGTCCCTGCTGAGTCTTCTCTTCTGGCCTT-AGGTTTG  848

seq1  GCCTGCATGCGGCTGTCTAGATGTTCTG  877
      |||||||||| |||||||||| ||||||
seq2  GCCTGCATGC-GCTGTCTAGA-GTTCTG  874