BAC Information

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BAC

Clone NameB6Ng01-031I12
Chromosome13 (Build37)2 (Build37)
Map Location 28,574,938 - 28,576,016100,608,043 - 100,608,474
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399
Downstream genePpia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031I12.bB6Ng01-031I12.g
ACCDH861116DH861117
length1,053951
definitionDH861116|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I12, 5' end.DH861117|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,574,938 - 28,576,016)(100,608,043 - 100,608,474)
sequence
gaattcactgctgggtggcaccatagttcgctttctcctcctgcctggca
ccttctgctgctatggaaacacacagaaagctttccttagagcattcagt
tctagtctctgtgagaaggttcttctagcacaattgaactgtagtcatac
tgaactataagaaaattgcctacaggtcaaggtctacagtctgttttcca
aagttaaccaggtcattgttacagagggagtgttccttgtatgagcagat
attcagagaagggcaaaggttactgtaaatcatttccattttacacacat
atcacatgtacagagttaaagacggtagctgtggtactgttttcccttag
ggtttagattctgattacactttcacttactatttcagaggctttgagta
tgctggtgtgtcttccgtccctcttaatattatctgttttttcagttctc
agaattgaatccagggtgttcctaatgctagctaaactctcttgcttgtt
ccgcttggtctacaattctgcccttccacttaataagagaaataaaagct
aattttatatgaaataccggaagccatcagcatcaagctgtatatcgaca
aaactgatattgctgcaacatttagctagtccttggagactgtggtgatt
caaatatgttttagttggaaaaaaaaaactaacctaaaagttaatagtga
cagtgttactgtttacaaagtacatgtttggtcactgacaacttctttat
gcaattgggtttatataaagataagatagaaaagtcaaagataaactact
atttctgaaggatgtgagtcttgaaagtggtgtagtacttctcttccttc
agaataatcagggctagtgttagctttgcttttctgtatttggggagagt
aataaccattgcttctcaggagtgagagcggggcagcacggtcatttgac
gtacatgagtaaatgttctttagaatgagatgtatgctgtgagatagacg
agatgagagttcccaagactcagaaaccctctgacctgactccatagtgc
tta
gaattcaatgtgtaccttgagcttcagtaatgtttgttttacaaatgtgg
gtgcccttgcatttggggcatggatgttcagaattgaaagttcatcttgg
tgaatttttcctttgatgagtatgtagtgtccttccccatattttttttt
ataagttttggttgaaagtctactttattagatattagaatctactccag
cttgtttcttgagaccatttgcttggaaattttttctagcctttcacttt
gaggtagtgtctgtctttgtcactgaggtgtgtttcctgtatgcagcaaa
atgctgggtcctatttacatatcgagtctgttagcctatgtctttttatt
ggggaattgagtccattgatgttgagagatattaggaaccaatgattgtt
ctttctgttatttttgtttttagagatgaaattctgtttgtgtggttttc
ttcttttgggtgtgttgtaaaaagattaatttctttgtttttcttgagtg
tagtttcccttgttgtgttggagttttccttctattatcctctgtagggc
tggattagtggaaataacttgtttaaatttggttttgtcttataatatct
tagtttctacatctatggtaactgagaattttttctgggtacagtagact
ggtctggcatttgcgttttcttagggtttgtatgacatctgcccaagatt
gtctggcttttagagtctctgttgagaagccttgtgtaattcttataggt
ctgcttttatatgtaacttgacctttttttccttaccacttcaatattct
ttctttgttctgtgcactttgatgttttgactattatgtgatgggagaat
ttctttctggtcccatctgtttggtagcttctgtaaattatgggttctca
ttcttttgttagggaagtttcttctataattttgttgaagatgtttgctg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28574938_28576016
seq2: B6Ng01-031I12.b_44_1096 (reverse)

seq1  TAAGCAACTTAATGGAGTTCAGGGTCAGAGGGTATCTGAAGTCTATGGGA  50
      ||||| |||  |||||| ||| ||||||||||| |||| ||||| |||||
seq2  TAAGC-ACT--ATGGAG-TCA-GGTCAGAGGGTTTCTG-AGTCT-TGGGA  43

seq1  ACTCTCAATCTCGGTCTTTATCTCACAGCATACATCCTTCATTTCTTAAA  100
      |||||| ||||||   | ||||||||||||||||||  |||||   ||||
seq2  ACTCTC-ATCTCG---TCTATCTCACAGCATACATC--TCATT--CTAAA  85

seq1  GAACAATTTAACTTCATTGTTACGTCAAATGACCGTGCTGCCCCCGCTCT  150
      |||| |||||   ||||   |||||||||||||||||||| |||||||| 
seq2  GAAC-ATTTA--CTCAT--GTACGTCAAATGACCGTGCTG-CCCCGCTC-  128

seq1  TCACTTCCTTGAGAAGCAATGGTTATTACTTCTCCCCAAATACAGAAAAG  200
      |||||  | |||||||||||||||||||| ||||||||||||||||||||
seq2  TCACT--CCTGAGAAGCAATGGTTATTAC-TCTCCCCAAATACAGAAAAG  175

seq1  CAAAGCTAACACTAGCCCCTGATTATTCTGAAGGAAGAGAAGTACTACAC  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAAGCTAACACTAG-CCCTGATTATTCTGAAGGAAGAGAAGTACTACAC  224

seq1  CACTTTCAAGACTCACATCCTTCAGAAATAGTAGTTTATCTTTGACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAAGACTCACATCCTTCAGAAATAGTAGTTTATCTTTGACTTTT  274

seq1  CTATCTTATCTTTATATAAACCCAATTGCATAAAGAAGTTGTCAGTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTATCTTTATATAAACCCAATTGCATAAAGAAGTTGTCAGTGACC  324

seq1  AAACATGTACTTTGTAAACAGTAACACTGTCACTATTAACTTTTAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTACTTTGTAAACAGTAACACTGTCACTATTAACTTTTAGGTTA  374

seq1  GTTTTTTTTTTCCAACTAAAACATATTTGAATCACCACAGTCTCCAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTCCAACTAAAACATATTTGAATCACCACAGTCTCCAAGGA  424

seq1  CTAGCTAAATGTTGCAGCAATATCAGTTTTGTCGATATACAGCTTGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAAATGTTGCAGCAATATCAGTTTTGTCGATATACAGCTTGATGC  474

seq1  TGATGGCTTCCGGTATTTCATATAAAATTAGCTTTTATTTCTCTTATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTTCCGGTATTTCATATAAAATTAGCTTTTATTTCTCTTATTAA  524

seq1  GTGGAAGGGCAGAATTGTAGACCAAGCGGAACAAGCAAGAGAGTTTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGGCAGAATTGTAGACCAAGCGGAACAAGCAAGAGAGTTTAGCT  574

seq1  AGCATTAGGAACACCCTGGATTCAATTCTGAGAACTGAAAAAACAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAGGAACACCCTGGATTCAATTCTGAGAACTGAAAAAACAGATAA  624

seq1  TATTAAGAGGGACGGAAGACACACCAGCATACTCAAAGCCTCTGAAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAGGGACGGAAGACACACCAGCATACTCAAAGCCTCTGAAATAG  674

seq1  TAAGTGAAAGTGTAATCAGAATCTAAACCCTAAGGGAAAACAGTACCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAAGTGTAATCAGAATCTAAACCCTAAGGGAAAACAGTACCACA  724

seq1  GCTACCGTCTTTAACTCTGTACATGTGATATGTGTGTAAAATGGAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCGTCTTTAACTCTGTACATGTGATATGTGTGTAAAATGGAAATGA  774

seq1  TTTACAGTAACCTTTGCCCTTCTCTGAATATCTGCTCATACAAGGAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTAACCTTTGCCCTTCTCTGAATATCTGCTCATACAAGGAACAC  824

seq1  TCCCTCTGTAACAATGACCTGGTTAACTTTGGAAAACAGACTGTAGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGTAACAATGACCTGGTTAACTTTGGAAAACAGACTGTAGACCT  874

seq1  TGACCTGTAGGCAATTTTCTTATAGTTCAGTATGACTACAGTTCAATTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTAGGCAATTTTCTTATAGTTCAGTATGACTACAGTTCAATTGT  924

seq1  GCTAGAAGAACCTTCTCACAGAGACTAGAACTGAATGCTCTAAGGAAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGAACCTTCTCACAGAGACTAGAACTGAATGCTCTAAGGAAAGC  974

seq1  TTTCTGTGTGTTTCCATAGCAGCAGAAGGTGCCAGGCAGGAGGAGAAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTGTTTCCATAGCAGCAGAAGGTGCCAGGCAGGAGGAGAAAGC  1024

seq1  GAACTATGGTGCCACCCAGCAGTGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  GAACTATGGTGCCACCCAGCAGTGAATTC  1053

seq1: chr2_100608043_100608474
seq2: B6Ng01-031I12.g_598_1016 (reverse)

seq1  CCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAA  50
      |||||||||||||||||||||||||| |||| ||||||||| || | |||
seq2  CCAGCAAACATCTTCAACAAAATTATAGAAG-AAACTTCCCTAA-CAAAA  48

seq1  GAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGAC  100
      ||| ||||  ||||| ||  ||| ||||| |||       ||||| ||| 
seq2  GAATGAGA-ACCCAT-AATTTAC-AGAAG-CTA-------CCAAACAGAT  87

seq1  TGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAA-  149
       ||||||| ||||||||| |||||  ||||||||| ||| |||| |||| 
seq2  GGGACCAG-AAAGAAATT-CTCCCATCACATAATAGTCAAAACATCAAAG  135

seq1  TGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGG-GAAAAAGGTCAA  198
      |||||  || ||||| |||||| |  |||  ||||||  |||||||||||
seq2  TGCACAGAACAAAGAAAGAATA-TTGAAGTGGTAAGGAAAAAAAGGTCAA  184

seq1  GTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGA  248
      || ||||||||| |||  ||||| |||||||||| ||  || ||| ||||
seq2  GTTACATATAAAAGCAGACCTATAAGAATTACACAAGGCTTCTCAACAGA  234

seq1  GACTATGAAAGCCAGAAGAGCCTGGTCAGATATTATACAGACACTAAGAG  298
      |||| | |||||||||  | | ||| ||||| | ||||| || |||||| 
seq2  GACTCTAAAAGCCAGACAATCTTGGGCAGATGTCATACAAACCCTAAGAA  284

seq1  AACATAAATGCCAGCCCAGGCTACTATACCCAG-CCAAACTCTCAATTAC  347
      |||  ||||||||| |||| ||||| |||||||   ||| ||||| ||||
seq2  AACGCAAATGCCAGACCAGTCTACTGTACCCAGAAAAAATTCTCAGTTAC  334

seq1  CATAGATGGAGAAACCAAAGTATTCCACGACAAAACTAAATTCACCCATT  397
      |||||||| |||||| ||  ||||  | |||||||| ||||| |  ||  
seq2  CATAGATGTAGAAACTAAGATATTATAAGACAAAACCAAATTTAAACAAG  384

seq1  ATCTCTCCACGAATCCAGCCCTTCAAAGGATAATA  432
       | | ||||| ||||||||||| || |||||||||
seq2  TTATTTCCACTAATCCAGCCCTACAGAGGATAATA  419