BAC Information

Click to search

BAC

Clone NameB6Ng01-031M13
Chromosome2 (Build37)
Map Location 152,064,774 - 152,151,176
singlet/doubletdoublet
Overlap geneCsnk2a1, Tbc1d20, Rbck1
Upstream geneLOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843
Downstream geneTrib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031M13.bB6Ng01-031M13.g
ACCDH861303DH861304
length1,0501,039
definitionDH861303|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M13, 5' end.DH861304|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,150,118 - 152,151,176)(152,064,774 - 152,065,818)
sequence
gaattccagggcagccaaaactttatcagaaaccatgtcttggaaaaaaa
ccaaaaaacaaaaaccaacaacctcctcacaaagtaagtaaataatttaa
agattacatttatttgtttgcttgtttctctctctctctgtgtgtgtgtg
tgtgtgtgtatgtagccatgcatgtgccatagagtacatgggaaggaagg
aggacaacttgcaggagccagttctcttttcactgtgtggttcaagggct
caaactcagatcatcaggcgtggtggcaagtggctttgcccactgagccc
tctctctggttgacattgacacaagtaaagtcagtctcatttgggttttt
gccagttgtccaaccagtgtccttggtggcaaaagatatggcattcagct
gccacatctcagtccctcccagccctgatcccctttgatccctggttatc
atgttcagtcctctttctccttggtgggcatttcagcacggtggagtccg
tgtttgggagctcctcctcctaaaagggacagagctcatgaagccagtta
tgaagtaaagccttagacatggggtatcccaagtggtaggtattttactt
ttcaaactataaccctacccccaccatacccccaaatgtactcctggact
atggctccccactagcctgcagcagtgggtggttggacagaggctggctc
tccttcgggaggggcctagaaacactgtagagttgggagttgactccagg
tgggttgtcagcatgtggttacctagataccacacatactccttctgcag
atttgggcttcaaggacctcacccttcagtcacgggggcccttggaacct
gtccttccgaagcccaggaccaccaggagccgggacagccagatgcagca
ccggagtcaccaccggtaagctgccttacctcgaggcacctgtgccctgc
cttcctgtcaagctcacagcaagctcacagcccgtctgcacccagtggct
ggcagttccctggctgcactttcatcacaaccacacggcctggggtgtga

gaattcaattgtcatttggctgtccccatagactctgtttacaagtgatt
ttgtttacttgtttttaagatgtgccctctatgtatagtctgttttgaaa
tttgctatctcgaccagatggaccttgaacttgtaaggattgtcctgcct
ctgtcttaagtgtaaggtttatagtcattacatatatctccacacctggc
acaagtcataaactctgcattggagttactctggttggttggttggtttt
ttgagacaaggtttttatatgtagaccagactgtcctcaaactcagagat
ccacttgcctctgccgcccaagtgctgggattaaaggtgtatgccaaaac
caactgattgatctcatttttgtttttttctccttttggggttaatgctt
ttgaggcagggtctagcctgtataactaagactggtcttgaatttgagtt
cttttgtcttggcctcctgcatgctgagattacaggggtaaaccataatt
cacagtgaaggtactttgatggctctgtgatattgggtgtatgtttgaac
ctaatacctcaaatgtgctcatagctgagctgtagccccagacttcaaac
tcacctctctctttttccttttgtttgtccctaaggtaccagagattgag
cctgtggttttgcacatgctagacagtcttcagagccttcatatttttaa
aatgtaaagacagtttgttaagacctagtaatcagaatagtaaatattca
aacatgttgattttttttcctttgtaatttagttggagacttttaatttt
tcaatgggattttatgaaattaagcttctattcatctgtctttctggaca
gtttcctcccaaaatatagcattccacattttgatgtactggagactttt
caggtatcagtcctaaggacttgcgtattcattggcagctacctaggttc
tggtctagtagtgtagtgtgtcctggccttttgtttctcccgtcattttg
gacaggttcaagaaaacttgtcacaagataaccttcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152150118_152151176
seq2: B6Ng01-031M13.b_48_1097 (reverse)

seq1  TCACA-CCCAGGCCGTGTGGGTTTGTTGATGAAAGTGCAGCCAGGGCACT  49
      ||||| ||||||||||||||  ||| |||||||||||||||||||| |||
seq2  TCACACCCCAGGCCGTGTGG--TTG-TGATGAAAGTGCAGCCAGGGAACT  47

seq1  GCCAGCCCACCTGGGTGCAGACGGGCTGTGAGCTTGGCTGTTGAGCTTGA  99
      |||||||   ||||||||||||||||||||||||| |||| |||||||||
seq2  GCCAGCC--ACTGGGTGCAGACGGGCTGTGAGCTT-GCTG-TGAGCTTGA  93

seq1  CAGGGAGGGCAGGGCACAGGTGCCCTCGAGGTAAGGCAGCTTACCGGTGG  149
      || ||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  CA-GGAAGGCAGGGCACAGGTG-CCTCGAGGTAAGGCAGCTTACCGGTGG  141

seq1  TGACTCCGGTGCTGCATCTGGCTGTCCCGGCTCCTGGTTGGTCCTGGGCT  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGACTCCGGTGCTGCATCTGGCTGTCCCGGCTCCTGG-TGGTCCTGGGCT  190

seq1  TCGGAAGGACAGGTTCCAAGGGCCCCCGTGACTGAAGGGTGAGGTCCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGGACAGGTTCCAAGGGCCCCCGTGACTGAAGGGTGAGGTCCTTG  240

seq1  AAGCCCAAATCTGCAGAAGGAGTATGTGTGGTATCTAGGTAACCACATGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAAATCTGCAGAAGGAGTATGTGTGGTATCTAGGTAACCACATGC  290

seq1  TGACAACCCACCTGGAGTCAACTCCCAACTCTACAGTGTTTCTAGGCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACCCACCTGGAGTCAACTCCCAACTCTACAGTGTTTCTAGGCCCC  340

seq1  TCCCGAAGGAGAGCCAGCCTCTGTCCAACCACCCACTGCTGCAGGCTAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAAGGAGAGCCAGCCTCTGTCCAACCACCCACTGCTGCAGGCTAGT  390

seq1  GGGGAGCCATAGTCCAGGAGTACATTTGGGGGTATGGTGGGGGTAGGGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCCATAGTCCAGGAGTACATTTGGGGGTATGGTGGGGGTAGGGTT  440

seq1  ATAGTTTGAAAAGTAAAATACCTACCACTTGGGATACCCCATGTCTAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGAAAAGTAAAATACCTACCACTTGGGATACCCCATGTCTAAGG  490

seq1  CTTTACTTCATAACTGGCTTCATGAGCTCTGTCCCTTTTAGGAGGAGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTCATAACTGGCTTCATGAGCTCTGTCCCTTTTAGGAGGAGGAG  540

seq1  CTCCCAAACACGGACTCCACCGTGCTGAAATGCCCACCAAGGAGAAAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAACACGGACTCCACCGTGCTGAAATGCCCACCAAGGAGAAAGAG  590

seq1  GACTGAACATGATAACCAGGGATCAAAGGGGATCAGGGCTGGGAGGGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACATGATAACCAGGGATCAAAGGGGATCAGGGCTGGGAGGGACT  640

seq1  GAGATGTGGCAGCTGAATGCCATATCTTTTGCCACCAAGGACACTGGTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGGCAGCTGAATGCCATATCTTTTGCCACCAAGGACACTGGTTG  690

seq1  GACAACTGGCAAAAACCCAAATGAGACTGACTTTACTTGTGTCAATGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTGGCAAAAACCCAAATGAGACTGACTTTACTTGTGTCAATGTCA  740

seq1  ACCAGAGAGAGGGCTCAGTGGGCAAAGCCACTTGCCACCACGCCTGATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAGAGGGCTCAGTGGGCAAAGCCACTTGCCACCACGCCTGATGA  790

seq1  TCTGAGTTTGAGCCCTTGAACCACACAGTGAAAAGAGAACTGGCTCCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTGAGCCCTTGAACCACACAGTGAAAAGAGAACTGGCTCCTGC  840

seq1  AAGTTGTCCTCCTTCCTTCCCATGTACTCTATGGCACATGCATGGCTACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCCTCCTTCCTTCCCATGTACTCTATGGCACATGCATGGCTACA  890

seq1  TACACACACACACACACACACAGAGAGAGAGAGAAACAAGCAAACAAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACAGAGAGAGAGAGAAACAAGCAAACAAATA  940

seq1  AATGTAATCTTTAAATTATTTACTTACTTTGTGAGGAGGTTGTTGGTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATCTTTAAATTATTTACTTACTTTGTGAGGAGGTTGTTGGTTTT  990

seq1  TGTTTTTTGGTTTTTTTCCAAGACATGGTTTCTGATAAAGTTTTGGCTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGGTTTTTTTCCAAGACATGGTTTCTGATAAAGTTTTGGCTGC  1040

seq1  CCTGGAATTC  1059
      ||||||||||
seq2  CCTGGAATTC  1050

seq1: chr2_152064774_152065818
seq2: B6Ng01-031M13.g_68_1106

seq1  GAATTCAATTGTCATTTGGCTGTCCCCATAGACTCTGTTTACAAGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGTCATTTGGCTGTCCCCATAGACTCTGTTTACAAGTGATT  50

seq1  TTGTTTACTTGTTTTTAAGATGTGCCCTCTATGTATAGTCTGTTTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACTTGTTTTTAAGATGTGCCCTCTATGTATAGTCTGTTTTGAAA  100

seq1  TTTGCTATCTCGACCAGATGGACCTTGAACTTGTAAGGATTGTCCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATCTCGACCAGATGGACCTTGAACTTGTAAGGATTGTCCTGCCT  150

seq1  CTGTCTTAAGTGTAAGGTTTATAGTCATTACATATATCTCCACACCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAAGTGTAAGGTTTATAGTCATTACATATATCTCCACACCTGGC  200

seq1  ACAAGTCATAAACTCTGCATTGGAGTTACTCTGGTTGGTTGGTTGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCATAAACTCTGCATTGGAGTTACTCTGGTTGGTTGGTTGGTTTT  250

seq1  TTGAGACAAGGTTTTTATATGTAGACCAGACTGTCCTCAAACTCAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAAGGTTTTTATATGTAGACCAGACTGTCCTCAAACTCAGAGAT  300

seq1  CCACTTGCCTCTGCCGCCCAAGTGCTGGGATTAAAGGTGTATGCCAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCCTCTGCCGCCCAAGTGCTGGGATTAAAGGTGTATGCCAAAAC  350

seq1  CAACTGATTGATCTCATTTTTGTTTTTTTCTCCTTTTGGGGTTAATGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGATTGATCTCATTTTTGTTTTTTTCTCCTTTTGGGGTTAATGCTT  400

seq1  TTGAGGCAGGGTCTAGCCTGTATAACTAAGACTGGTCTTGAATTTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAGGGTCTAGCCTGTATAACTAAGACTGGTCTTGAATTTGAGTT  450

seq1  CTTTTGTCTTGGCCTCCTGCATGCTGAGATTACAGGGGTAAACCATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTTGGCCTCCTGCATGCTGAGATTACAGGGGTAAACCATAATT  500

seq1  CACAGTGAAGGTACTTTGATGGCTCTGTGATATTGGGTGTATGTTTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAAGGTACTTTGATGGCTCTGTGATATTGGGTGTATGTTTGAAC  550

seq1  CTAATACCTCAAATGTGCTCATAGCTGAGCTGTAGCCCCAGACTTCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACCTCAAATGTGCTCATAGCTGAGCTGTAGCCCCAGACTTCAAAC  600

seq1  TCACCTCTCTCTTTTTCCTTTTGTTTGTCCCTAAGGTACCAGAGATTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTCTCTTTTTCCTTTTGTTTGTCCCTAAGGTACCAGAGATTGAG  650

seq1  CCTGTGGTTTTGCACATGCTAGACAGTCTTCAGAGCCTTCATATTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTTTTGCACATGCTAGACAGTCTTCAGAGCCTTCATATTTTTAA  700

seq1  AATGTAAAGACAGTTTGTTAAGACCTAGTAATCAGAATAGTAAATATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAGACAGTTTGTTAAGACCTAGTAATCAGAATAGTAAATATTCA  750

seq1  AACATGTTGATTTTTTTTCCTTTGTAATTTAGTTGGAGACTTTTAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTGATTTTTTTTCCTTTGTAATTTAGTTGGAGACTTTTAATTTT  800

seq1  TCAATGGAATTTTAATGAAAATTAGCTTCTATTCATCTGTCTTTCTGGAC  850
      ||||||| ||||| |||||| | |||||||||||||||||||||||||||
seq2  TCAATGGGATTTT-ATGAAATTAAGCTTCTATTCATCTGTCTTTCTGGAC  849

seq1  AGTTTTCCTCCCAAAATATAGCATTCCACATTTTTGATGTACTGGAGACT  900
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AG-TTTCCTCCCAAAATATAGCATTCCACA-TTTTGATGTACTGGAGACT  897

seq1  TTTCAGGTATCAGTCCTAAGGACTTGCGTATCCATTGGCAGCTACCTAGG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCAGGTATCAGTCCTAAGGACTTGCGTATTCATTGGCAGCTACCTAGG  947

seq1  TTCTTGTCTAGTTAAGTGTAGTTGTGTTCCTGG-CTTTTGTTTCTCCCGT  999
      |||| |||||||  ||||||| |||| |||||| ||||||||||||||||
seq2  TTCTGGTCTAGT--AGTGTAG-TGTG-TCCTGGCCTTTTGTTTCTCCCGT  993

seq1  CATATTTGACAGTTTCTAGAAAACTTGTACCAAGATAACCTTCATA  1045
      ||| || ||||| ||| |||||||||||  ||||||||||||||||
seq2  CATTTTGGACAGGTTCAAGAAAACTTGTCACAAGATAACCTTCATA  1039