BAC Information

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BAC

Clone NameB6Ng01-032P12
Chromosome2 (Build37)
Map Location 179,810,682 - 179,962,180
singlet/doubletdoublet
Overlap geneGtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5
Upstream geneLOC100043168, LOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1
Downstream geneRps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032P12.bB6Ng01-032P12.g
ACCDH862151DH862152
length647741
definitionDH862151|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P12, 5' end.DH862152|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,961,535 - 179,962,180)(179,810,682 - 179,811,416)
sequence
gaattccagattcctccctgtctcccgccctctctggagccagcccctcc
cccacaccaagccttcgaagcaaagggaagcggctgccttgccctccccc
aggtggaaaactaatagtgaggttatagaggaattccggggagggaaagt
ggaagcatccagggagggcagcttgtcttgacctcgcattttcaacggag
actggggtcctcccagccccttggggtttaagatttgtaggaggctgggg
ggttagtcaggagggcaggaggatggtgcaaattttccagacaattacgg
gtcagaactgggccaggacatgatggcagtgtttcaggaactcactggga
cccttgggattatccagaaggaccagcaagaatgggagtcctacccaaaa
acgtgagatggtggcctggctaggagataaggggagctgctagccctgct
gctgagttcgacctctacacccctgggggctttcctgtttggtcctagaa
tccaagggaagggaatccagtggctgtggctgaagcagacatgaggtaca
caagcatcttagctaagcctctaggacgttcaatgttttgcaactcagcc
aggcagatcaactggagcccactgtaccccagaaacacaggagctag
gaattctctgtaaatctagtcactccagagcaatctgctttaaaaagata
actttcatagttagggctggagttgtagctctgtggtagggcatttattt
atttatttatttatttatgtgtatgcattttttatctgcatgtatacctg
catgcatcagattacatgtggttgctgggacttgaactcaggacctctag
aagagcagacgatactctttaaccacgagccatttgtccagagccactga
gccatctatccctctaggcactgtagaaattaaaacaagcttcagagggc
tcagtggttaacagtgtggctgcttttacaaaagactagggttctattcc
caggacccacctggaagctcacaactgtctgtaactccagttcccaggga
tctgacatccacagacactaggtagatatgtacacacatgcatgtattgc
acatacatttgacagaacacccatatttataaaataaagtaataaagtat
tcaaagttgaaaaagaaaagaaaaaacagttgggcatggtggcatatgcc
tttaatcccagcacttgggaggcagaggcaggcggatttcagagttttga
ggccagcctgatctacagaatgagttccaggacagccagagctacacaga
gaaacccctgtcttgaaaaaaaaaaaagaagaaaagaaaaaaaaaaactt
agggctagcaggaggaggggtgaccccctgaatgtttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_179961535_179962180
seq2: B6Ng01-032P12.b_35_681 (reverse)

seq1  CTAGCTCCTGTGTTTCTGGGGTACAGTGGGCTCCAGTTGATCTGCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCTGTGTTTCTGGGGTACAGTGGGCTCCAGTTGATCTGCCTGGC  50

seq1  TGAGTTGC-AAACATTGAACGTCCTAGAGGCTTAGCTAAGATGCTTGTGT  99
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGCAAAACATTGAACGTCCTAGAGGCTTAGCTAAGATGCTTGTGT  100

seq1  ACCTCATGTCTGCTTCAGCCACAGCCACTGGATTCCCTTCCCTTGGATTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGTCTGCTTCAGCCACAGCCACTGGATTCCCTTCCCTTGGATTC  150

seq1  TAGGACCAAACAGGAAAGCCCCCAGGGGTGTAGAGGTCGAACTCAGCAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCAAACAGGAAAGCCCCCAGGGGTGTAGAGGTCGAACTCAGCAGC  200

seq1  AGGGCTAGCAGCTCCCCTTATCTCCTAGCCAGGCCACCATCTCACGTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAGCAGCTCCCCTTATCTCCTAGCCAGGCCACCATCTCACGTTTT  250

seq1  TGGGTAGGACTCCCATTCTTGCTGGTCCTTCTGGATAATCCCAAGGGTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGACTCCCATTCTTGCTGGTCCTTCTGGATAATCCCAAGGGTCC  300

seq1  CAGTGAGTTCCTGAAACACTGCCATCATGTCCTGGCCCAGTTCTGACCCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTTCCTGAAACACTGCCATCATGTCCTGGCCCAGTTCTGACCCG  350

seq1  TAATTGTCTGGAAAATTTGCACCATCCTCCTGCCCTCCTGACTAACCCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCTGGAAAATTTGCACCATCCTCCTGCCCTCCTGACTAACCCCC  400

seq1  CAGCCTCCTACAAATCTTAAACCCCAAGGGGCTGGGAGGACCCCAGTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTACAAATCTTAAACCCCAAGGGGCTGGGAGGACCCCAGTCTC  450

seq1  CGTTGAAAATGCGAGGTCAAGACAAGCTGCCCTCCCTGGATGCTTCCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGAAAATGCGAGGTCAAGACAAGCTGCCCTCCCTGGATGCTTCCACT  500

seq1  TTCCCTCCCCGGAATTCCTCTATAACCTCACTATTAGTTTTCCACCTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCCGGAATTCCTCTATAACCTCACTATTAGTTTTCCACCTGGG  550

seq1  GGAGGGCAAGGCAGCCGCTTCCCTTTGCTTCGAAGGCTTGGTGTGGGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCAAGGCAGCCGCTTCCCTTTGCTTCGAAGGCTTGGTGTGGGGGA  600

seq1  GGGGCTGGCTCCAGAGAGGGCGGGAGACAGGGAGGAATCTGGAATTC  646
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGCTCCAGAGAGGGCGGGAGACAGGGAGGAATCTGGAATTC  647

seq1: chr2_179810682_179811416
seq2: B6Ng01-032P12.g_71_811

seq1  GAATTCTCTGTAAATCTAGTCACTCCAGAGCAATCTGCTTTAAAAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAAATCTAGTCACTCCAGAGCAATCTGCTTTAAAAAGATA  50

seq1  ACTTTCATAGTTAGGGCTGGAGTTGTAGCTCTGTGGTAGGGCATTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATAGTTAGGGCTGGAGTTGTAGCTCTGTGGTAGGGCATTTATTT  100

seq1  ATTTATTTATTTATTTATGTGTATGCATTTTTTATCTGCATGTATACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATGTGTATGCATTTTTTATCTGCATGTATACCTG  150

seq1  CATGCATCAGATTACATGTGGTTGCTGGGACTTGAACTCAGGACCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCAGATTACATGTGGTTGCTGGGACTTGAACTCAGGACCTCTAG  200

seq1  AAGAGCAGACGATACTCTTTAACCACGAGCCATTTGTCCAGAGCCACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGACGATACTCTTTAACCACGAGCCATTTGTCCAGAGCCACTGA  250

seq1  GCCATCTATCCCTCTAGGCACTGTAGAAATTAAAACAAGCTTCAGAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTATCCCTCTAGGCACTGTAGAAATTAAAACAAGCTTCAGAGGGC  300

seq1  TCAGTGGTTAACAGTGTGGCTGCTTTTACAAAAGACTAGGGTTCTATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTTAACAGTGTGGCTGCTTTTACAAAAGACTAGGGTTCTATTCC  350

seq1  CAGGACCCACCTGGAAGCTCACAACTGTCTGTAACTCCAGTTCCCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCACCTGGAAGCTCACAACTGTCTGTAACTCCAGTTCCCAGGGA  400

seq1  TCTGACATCCACAGACACTAGGTAGATATGTACACACATGCATGTATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATCCACAGACACTAGGTAGATATGTACACACATGCATGTATTGC  450

seq1  ACATACATTTGACAGAACACCCATATTTATAAAATAAAGTAATAAAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATTTGACAGAACACCCATATTTATAAAATAAAGTAATAAAGTAT  500

seq1  TCAAAGTTGAAAAAGAAAAGAAAAAACAGTTGGGCATGGTGGCATATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTGAAAAAGAAAAGAAAAAACAGTTGGGCATGGTGGCATATGCC  550

seq1  TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCAGAG-TTTGA  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCAGAGTTTTGA  600

seq1  GGCCAGCCTGATCTACAGAATGAGTTCCAGGACAGCCAGAGCTACACAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGATCTACAGAATGAGTTCCAGGACAGCCAGAGCTACACAGA  650

seq1  GAAA-CCCTGTCTTGAAAAAAAAAAAAGAAGAAA--GAAAAAAAAAACTT  696
      |||| |||||||||||||||||||||||||||||   |||||||||||||
seq2  GAAACCCCTGTCTTGAAAAAAAAAAAAGAAGAAAAGAAAAAAAAAAACTT  700

seq1  AGGGCTAGCAGGAGGA-GGGTGA-CCCCTGAATGTCTGTGT  735
      |||||||||||||||| |||||| ||||||||||| |||||
seq2  AGGGCTAGCAGGAGGAGGGGTGACCCCCTGAATGTTTGTGT  741