BAC Information

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BAC

Clone NameB6Ng01-033E02
Chromosome2 (Build37)
Map Location 40,706,467 - 40,773,046
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033E02.bB6Ng01-033E02.g
ACCDH862360DH862361
length1,120303
definitionDH862360|Mus musculus domesticus DNA, BAC clone: B6Ng01-033E02, 5' end.DH862361|Mus musculus domesticus DNA, BAC clone: B6Ng01-033E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,771,903 - 40,773,046)(40,706,467 - 40,706,775)
sequence
gaattcagtttaaaaagttatgatttcctttgtggtttctgctttctaat
tcacatttaaactattgtcatttctttaatcctgtttttatatacttgct
tttagagcatttatatgtatggaacactgaatagactgttctaataatga
ctactatattacttagttctcttaatccaccatttaatttcttagcaaat
gggtaaaatacttagattttgtctttaaaataagttaaacagatttattg
aggcatatttaaaatacagtatatgtcacttgtcttaaatatactcaatg
gtttttaataaattaaaattttgcactcatcataccaataaatttctgaa
tgtttatctgggaaggctcctatcctgattctcatttcctccacaatttt
cccatttataggcacttcacaaaattaagatatgcagtatgcaagttttt
cagttcctgcttctttcacttaaatatgtctttcagatgcatccatatta
taaaatgtactaatatgtcgtgaatcattactactctctttttcttttat
tatttctccttttgggtttgtcacttcaaaccctcccttcttttaaattc
attgcaatttttctcaataattgttcttatatgtatatatgtatatttat
aaactatgtccccaggtaaaaccttctgtgcataatattacatgtatgtg
tgttttcagggctgaactttggtctaagataaccaggtggcctgctactt
tcagggctaatttttgttcttatttaacgagggggcatactagaaatagt
gtttcctagggaagactatttctcccattcttactgtctgaatttttaag
gtgctttaccaatgtgtacctcagtttctaaaacactagagtacaaaaca
aattggataagttattatattatgttgatggtaaataatactaagttata
tattctatataaatgtcatgctatgtgttttaaactactgactactataa
ccatgatgactactaatatttgtagtcagtagaaaatatcagctatctaa
atccggactaacaaggtattttctaagaaaaaggctcaaaattctctatt
tactggagccacatttaagt
acctcagtcatttgtagttttctcactctgcatcatgcttgtccacattt
ctctcctttttggaggcttgacctatcaaatgtctacgttttaattcttt
catcttcctctagttttattttaatgttcattttcctgctcatgatttac
ccttatataaaatttctttacctatttcatataaatttgaaactaatgca
ttatagaaaggaaaaacaacaatatttttaactttgtttgatatatatat
atatattatatttatatatatatatatatatttatatgtatatatatata
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40771903_40773046
seq2: B6Ng01-033E02.b_44_1163 (reverse)

seq1  ACTTAAAATGTGTGCT-CAGTAAATTAAGAGAATTTTTGGAGGCTTTTTT  49
      |||| ||||||| ||| ||||||||  ||||||||||  ||| |||||| 
seq2  ACTT-AAATGTG-GCTCCAGTAAAT--AGAGAATTTT--GAGCCTTTTT-  43

seq1  CCTTAG-AAATA-CTTGTTAGGTCCCGATTTTAGATAGCTTGATATTTTC  97
       ||||| ||||| ||||||| |||| || |||||||||| ||||||||||
seq2  -CTTAGAAAATACCTTGTTA-GTCCGGA-TTTAGATAGC-TGATATTTTC  89

seq1  TTACTTGACCTACAAATATTAGTAGTCAATTCATGGTTATTAGTAGTCAG  147
       ||| ||| |||||||||||||||||||  ||||||||| ||||||||||
seq2  -TAC-TGA-CTACAAATATTAGTAGTCA--TCATGGTTA-TAGTAGTCAG  133

seq1  TAGTTTTAAAAACACATTAGCATGACATTTTATATAGAATATTATTAACT  197
      ||||||  |||||||| |||||||||| ||||||||||||||   |||||
seq2  TAGTTT--AAAACACA-TAGCATGACA-TTTATATAGAATAT--ATAACT  177

seq1  TAGTATTATTTACCATTCAACATAATATTAATAAACTTATCCAATTTGTT  247
      ||||||||||||||| ||||||||||| |||| ||||||||||||||| |
seq2  TAGTATTATTTACCA-TCAACATAATA-TAAT-AACTTATCCAATTTG-T  223

seq1  TTTGTACTCTAGTGTTTTAGAAACTGAGGTACACATTGGTAAAGCACCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTCTAGTGTTTTAGAAACTGAGGTACACATTGGTAAAGCACCTT  273

seq1  AAAAATTCAGACAGTAAGAATGGGAGAAATAGTCTTCCCTAGGAAACACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCAGACAGTAAGAATGGGAGAAATAGTCTTCCCTAGGAAACACT  323

seq1  ATTTCTAGTATGCCCCCTCGTTAAATAAGAACAAAAATTAGCCCTGAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGTATGCCCCCTCGTTAAATAAGAACAAAAATTAGCCCTGAAAG  373

seq1  TAGCAGGCCACCTGGTTATCTTAGACCAAAGTTCAGCCCTGAAAACACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCCACCTGGTTATCTTAGACCAAAGTTCAGCCCTGAAAACACAC  423

seq1  ATACATGTAATATTATGCACAGAAGGTTTTACCTGGGGACATAGTTTATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTAATATTATGCACAGAAGGTTTTACCTGGGGACATAGTTTATA  473

seq1  AATATACATATATACATATAAGAACAATTATTGAGAAAAATTGCAATGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACATATATACATATAAGAACAATTATTGAGAAAAATTGCAATGAA  523

seq1  TTTAAAAGAAGGGAGGGTTTGAAGTGACAAACCCAAAAGGAGAAATAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGAAGGGAGGGTTTGAAGTGACAAACCCAAAAGGAGAAATAATA  573

seq1  AAAGAAAAAGAGAGTAGTAATGATTCACGACATATTAGTACATTTTATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAGAGTAGTAATGATTCACGACATATTAGTACATTTTATAA  623

seq1  TATGGATGCATCTGAAAGACATATTTAAGTGAAAGAAGCAGGAACTGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGCATCTGAAAGACATATTTAAGTGAAAGAAGCAGGAACTGAAA  673

seq1  AACTTGCATACTGCATATCTTAATTTTGTGAAGTGCCTATAAATGGGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCATACTGCATATCTTAATTTTGTGAAGTGCCTATAAATGGGAAA  723

seq1  ATTGTGGAGGAAATGAGAATCAGGATAGGAGCCTTCCCAGATAAACATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGAGGAAATGAGAATCAGGATAGGAGCCTTCCCAGATAAACATTC  773

seq1  AGAAATTTATTGGTATGATGAGTGCAAAATTTTAATTTATTAAAAACCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTATTGGTATGATGAGTGCAAAATTTTAATTTATTAAAAACCAT  823

seq1  TGAGTATATTTAAGACAAGTGACATATACTGTATTTTAAATATGCCTCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATATTTAAGACAAGTGACATATACTGTATTTTAAATATGCCTCAA  873

seq1  TAAATCTGTTTAACTTATTTTAAAGACAAAATCTAAGTATTTTACCCATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGTTTAACTTATTTTAAAGACAAAATCTAAGTATTTTACCCATT  923

seq1  TGCTAAGAAATTAAATGGTGGATTAAGAGAACTAAGTAATATAGTAGTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGAAATTAAATGGTGGATTAAGAGAACTAAGTAATATAGTAGTCA  973

seq1  TTATTAGAACAGTCTATTCAGTGTTCCATACATATAAATGCTCTAAAAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAACAGTCTATTCAGTGTTCCATACATATAAATGCTCTAAAAGC  1023

seq1  AAGTATATAAAAACAGGATTAAAGAAATGACAATAGTTTAAATGTGAATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATAAAAACAGGATTAAAGAAATGACAATAGTTTAAATGTGAATT  1073

seq1  AGAAAGCAGAAACCACAAAGGAAATCATAACTTTTTAAACTGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGAAACCACAAAGGAAATCATAACTTTTTAAACTGAATTC  1120

seq1: chr2_40706467_40706775
seq2: B6Ng01-033E02.g_65_373

seq1  GAATTCACCTCAGTCATTTGTAGTTTTCTCACTCTGCATCATGCTTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCAGTCATTTGTAGTTTTCTCACTCTGCATCATGCTTGTCC  50

seq1  ACATTTCTCTCCTTTTTGGAGGCTTGACCTATCAAATGTCTACGTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTCTCCTTTTTGGAGGCTTGACCTATCAAATGTCTACGTTTTAA  100

seq1  TTCTTTCATCTTCCTCTAGTTTTATTTTAATGTTCATTTTCCTGCTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATCTTCCTCTAGTTTTATTTTAATGTTCATTTTCCTGCTCATG  150

seq1  ATTTACCCTTATATAAAATTTCTTTACCTATTTCATATAAATTTGAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCTTATATAAAATTTCTTTACCTATTTCATATAAATTTGAAACT  200

seq1  AATGCATTATAGAAAGGAAAAACAACAATATTTTTAACTTTGTTTGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTATAGAAAGGAAAAACAACAATATTTTTAACTTTGTTTGATAT  250

seq1  ATATATATATATTATATTTATATATATATATATATATTTATATGTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATTATATTTATATATATATATATATATTTATATGTATATA  300

seq1  TATATATAT  309
      |||||||||
seq2  TATATATAT  309