BAC Information

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BAC

Clone NameB6Ng01-033H12
Chromosome2 (Build37)12 (Build37)
Map Location 142,776,228 - 142,776,76632,631,616 - 32,631,846
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033H12.bB6Ng01-033H12.g
ACCDH862509DH862510
length1,007600
definitionDH862509|Mus musculus domesticus DNA, BAC clone: B6Ng01-033H12, 5' end.DH862510|Mus musculus domesticus DNA, BAC clone: B6Ng01-033H12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,228 - 142,776,766)(32,631,616 - 32,631,846)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccacctccttgaattctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgccctttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacaacacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccag
tttctcttctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctgttccattgg
tttacttgtctgtctctataccagtaccatgcagtttttattacaattgc
tctgtagtaaagctttaggtcaggcatggcgattccaccagaggatcttt
tatccttgagaagactttttgctatcctaggttttttgttactccagatg
aatttacaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggaagatagccatttt
tacaatgttgatccctgcctatccatgagcatgggagatctttcccatct
tctgagaccttcttaattttctttcttcagggacttgaagtttttatcaa
tcagatctttcacttctttagttagagtcaccgcaagatattttatatat
ttgcgatattgagagggtgtgtttccctaatttttttctcagcctgttta
tctttgt
gaattccttgatccacttagatttgaccttagtacaaggagataagatat
aagatacaatttgcaaaacacatgaatctcaagaagagcgaacaccaaag
tgtggacactttgtaccttcttagaattgggaacaaaacacccatggaag
gagttacagagacaaagtttggagctgagacaaaaggatggaccatctag
agactgccatacccagggatccatccgataatcagcctccaaacgctgac
accattgcatacactagcaagattttgctgaaaggaccctgatatagctg
tctcttgtgaggttactccagggcctagccaacacagaagtgaatactca
cagtcagctattggatggatcacagggcccccaatggaggagctagagaa
tgtacccaaggagctaaagggatctgcaaccctataggtggaacaacaat
atgaactaaccagtacctgggagctcatatctctagctgcatatgtatca
gaagatggcctagttggccatcagtggaaagagaggcccattggtcttgc
aacctttatatgcctcagtacaggggaatgccagggccaagaagtgggag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776228_142776766
seq2: B6Ng01-033H12.b_518_1052 (reverse)

seq1  ACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTC  50
      |||||| ||||||||||||||||| ||||||||||||| |||||| ||||
seq2  ACAAAG-ATAAACAGGCTGAGAAAAAAATTAGGGAAAC-ACACCC-TCTC  47

seq1  AATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAG  100
      |||| || ||||| ||||||||||||| |  |||||||||||||| ||||
seq2  AATA-TCGCAAAT-ATATAAAATATCTTGCGGTGACTCTAACTAAAGAAG  95

seq1  TGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAA  150
      |||||||||||  |||||||||||||||||| ||||||||||||| | ||
seq2  TGAAAGATCTGATTGATAAAAACTTCAAGTCCCTGAAGAAAGAAAATTAA  145

seq1  GAAGATCTCAGAAGAT-GGAAGGATCTCCCATGCTCATGGATTGGCA-GG  198
      |||| ||||||||||| |||| |||||||||||||||||||| |||| ||
seq2  GAAGGTCTCAGAAGATGGGAAAGATCTCCCATGCTCATGGATAGGCAGGG  195

seq1  ATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAA  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCAACATTGTAAAAATGGCTATCTT-CCAAAAGCAATCTACAGATTCAA  244

seq1  TGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAG  294

seq1  CAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGT  348
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  CAATTTGTAAATTCATCTGGAGTAACAAAAAACCTAGGATAGCAAAAAGT  344

seq1  CTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAA  398
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  CTTCTCAAGGATAAAAGATCCTCTGGTGGAATCGCCATGCCTGACCTAAA  394

seq1  GCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAG  448
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTTTACTACAGAGCAATTGTAATAAAAACTGCATGGTACTGGTATAGAG  444

seq1  ACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCA  498
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  ACAGACAAGTAAACCAATGGAACAGAATTGAAGACCCAGAAATGAACCCA  494

seq1  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  539
      ||||||||||||||||||||||| |||||||||||||||||
seq2  CACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAAC  535

seq1: chr12_32631616_32631846
seq2: B6Ng01-033H12.g_393_668 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGGTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| |||||||||||||||||||||                ||||
seq2  GCAAGACCAATGGGCCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      ||||||||| ||||||||||| | |||||||   ||||||||| ||||||
seq2  TGATACATATGCAGCTAGAGATATGAGCTCC-CAGGTACTGGTTAGTTCA  149

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTAC  199

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
       ||||||| |||||||||||||| ||||||||||| ||||||||||||||
seq2  ATTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATCCAATAGCTGAC  248

seq1  TGTGAGCATCCACTTCTGTGTTTGCTAG  231
      |||||| || |||||||||||| |||||
seq2  TGTGAGTATTCACTTCTGTGTTGGCTAG  276