BAC Information

Click to search

BAC

Clone NameB6Ng01-033M17
Chromosome2 (Build37)
Map Location 39,229,823 - 39,230,611
singlet/doubletsinglet
Overlap genenone
Upstream geneNek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2
Downstream genePpia-ps2_560.1, LOC100042604, Magmas-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033M17.bB6Ng01-033M17.g
ACCDH862747DH862748
length1,050789
definitionDH862747|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M17, 5' end.DH862748|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaggacttgaagtttttatcatac
agatctttcacttccttcgttagagtcacgcgagatattttatattattt
gtgggctattgagaaggggttgttccctgatatccttcctcagcctgttt
attttttgggaaagaaaagccattgatatgttttgagttatttattctca

gaattccttaggcagaaaaccctggattcctctttactcaaccggagcca
caaaaatgtcagaaccatgcaggcagtcaaaattacctacaaccgtgtac
tacagtattgcttctatttacatggaaagaattgtttgatgggaagtagt
aagcaaagttgctcaccataaccataaaaagactctttctgaatggctac
ccagggaccatcagtctttacaaattcattttttcaatgttattccttct
agatttagatggtaatactacatatatggcttagcttaaagttgtttcat
aaatgacactggttccaaagatatggaaatgaaaggctaccctaaataaa
agaatgctgtaagattctggatatttgtgtaaaatagcaataggtatagt
tgtacttctaaacaaaatacatgtagatttactaacctatttatttttat
attttttgtatggacatttttctcaaggatttttgtttgtttactattgg
gagatggataggagtgcatgtcttgacataagagaagaacttatagaagt
tgggtttggcaaaaaaaaaaaaaacaaacaaacaaaaaaaaaacatcttg
accctctgagctatctaactagacatttttttaagcagtacaaggtcaac
cactttggcttttaaaatatcacctgtaaaacttagttttacatttttat
attaatgttttaattactcctgtgctgcctgtgccctggactactctatg
tctgactctacctgcccttgggggtaggaggtgaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_39229823_39230611
seq2: B6Ng01-033M17.g_70_858 (reverse)

seq1  CCACCTCACCTCCTACCCCCAAGGGCAGGTAGAGTCAGACATAGAGTAGT  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCACCTCCTACCCCCAAGGGCAGGTAGAGTCAGACATAGAGTAGT  50

seq1  CCAGGGCACAGGCAGCACAGGAGTAATTAAAACATTAATATAAAAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCACAGGCAGCACAGGAGTAATTAAAACATTAATATAAAAATGTA  100

seq1  AAACTAAGTTTTACAGGTGATATTTTAAAAGCCAAAGTGGTTGACCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGTTTTACAGGTGATATTTTAAAAGCCAAAGTGGTTGACCTTGT  150

seq1  ACTGCTTAAAAAAATGTCTAGTTAGATAGCTCAGAGGGTCAAGATGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTAAAAAAATGTCTAGTTAGATAGCTCAGAGGGTCAAGATGTTTT  200

seq1  TTTTTTGTTTGTTTGTTTTTTTTTTTTTTGCCAAACCCAACTTCTATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTGTTTGTTTTTTTTTTTTTTGCCAAACCCAACTTCTATAAG  250

seq1  TTCTTCTCTTATGTCAAGACATGCACTCCTATCCATCTCCCAATAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTTATGTCAAGACATGCACTCCTATCCATCTCCCAATAGTAAA  300

seq1  CAAACAAAAATCCTTGAGAAAAATGTCCATACAAAAAATATAAAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAATCCTTGAGAAAAATGTCCATACAAAAAATATAAAAATAAA  350

seq1  TAGGTTAGTAAATCTACATGTATTTTGTTTAGAAGTACAACTATACCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAGTAAATCTACATGTATTTTGTTTAGAAGTACAACTATACCTAT  400

seq1  TGCTATTTTACACAAATATCCAGAATCTTACAGCATTCTTTTATTTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTTACACAAATATCCAGAATCTTACAGCATTCTTTTATTTAGGG  450

seq1  TAGCCTTTCATTTCCATATCTTTGGAACCAGTGTCATTTATGAAACAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTCATTTCCATATCTTTGGAACCAGTGTCATTTATGAAACAACT  500

seq1  TTAAGCTAAGCCATATATGTAGTATTACCATCTAAATCTAGAAGGAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTAAGCCATATATGTAGTATTACCATCTAAATCTAGAAGGAATAA  550

seq1  CATTGAAAAAATGAATTTGTAAAGACTGATGGTCCCTGGGTAGCCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAAAAATGAATTTGTAAAGACTGATGGTCCCTGGGTAGCCATTCA  600

seq1  GAAAGAGTCTTTTTATGGTTATGGTGAGCAACTTTGCTTACTACTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTCTTTTTATGGTTATGGTGAGCAACTTTGCTTACTACTTCCCA  650

seq1  TCAAACAATTCTTTCCATGTAAATAGAAGCAATACTGTAGTACACGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAATTCTTTCCATGTAAATAGAAGCAATACTGTAGTACACGGTTG  700

seq1  TAGGTAATTTTGACTGCCTGCATGGTTCTGACATTTTTGTGGCTCCGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATTTTGACTGCCTGCATGGTTCTGACATTTTTGTGGCTCCGGTT  750

seq1  GAGTAAAGAGGAATCCAGGGTTTTCTGCCTAAGGAATTC  789
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGAGGAATCCAGGGTTTTCTGCCTAAGGAATTC  789