BAC Information

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BAC

Clone NameB6Ng01-034L14
Chromosome2 (Build37)
Map Location 101,052,661 - 101,162,574
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034L14.bB6Ng01-034L14.g
ACCDH863393DH863394
length9691,078
definitionDH863393|Mus musculus domesticus DNA, BAC clone: B6Ng01-034L14, 5' end.DH863394|Mus musculus domesticus DNA, BAC clone: B6Ng01-034L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,052,661 - 101,053,494)(101,161,479 - 101,162,574)
sequence
gaattcagtttgctagtgtattgttaaggactcccacacacatgttgatt
aggaagatttgtctgtaatttattttcttgtaatgtctttctctagcttt
gctattagagaaattatggctttctgaaatgagttaaaaatgtatttgta
tcctcttctttagtattttcgaaggctttggggattggtattagttcttt
aaatgcttgctgcaattcagcagttgagatcactggatgctaggattttc
ttcaatgggaaacttttttgttatatagatccaatcttcttactcataat
ggatctgttcagatttcaatttcttcataattcagttcctgccagttgta
tatgcctgggaatttattcatttcctctaggttatccaatttgtttgcat
gttattctttgtagtaatctcttataatcctttgtggttgtttggtacca
aatataatatttcttctcacatttctacttttattgatcctcactcttct
gtctttatttaggtatgggtttgtcaaatcacatccactaatataaaaag
caagtcttggctctgttgttcttttctacttttactatagttcctatgcc
attcttgggttcattattctttctttctgttcaattgaagcttcctttgt
caatctctacacacgagctattctggggaagggcagactggtttgactcc
cagtcatcttgaaaaccatcatgggaaatgcatgtgccagcctggaacac
ttggatggacttagaacttgaagctttggggtttgcctaatggtggggac
aggcttggggcttatgtgctgaagcagttttaaatctaggtccatgggaa
cagatccctaattttgtctctgggactatttgcgtggcattctctgaatt
tcacattccctctcaaatgaaacattactctaggaggattgtgtcatggg
tgttgtgctgcatgttgca
gaattctctgagatgattgttctttttatgggcagagaaactgaggtttg
aggaaaaaaaatatctctgttagaggagagagggttaggcttttttggtt
ccagagcttatcatctttactactatctatctgcttcctttgaacactta
aaaatatattcaaatctattttctcatttgatactatgcacatctcatta
agggaatggaaagtaacagtagctcttgttttttggattttttaaaattt
catcctttgctctgggaaattgctcaggggcaagcagtgtatttgactga
ctctcctacatatatttgccttatggacaaggagactgtgaaaaccccag
taatgatggtgtggatggtttcaaggtgacagcattcggcccacaaggca
cgactccaaatgcagcagactccatacagccagcacccttcatataatat
gagacatttgttctgtatgttttcataaagtatctggaaccctcatagtc
ctgtgtcccagaatgggatttcacatggcttgctgaaaatcagatgtgtt
cagatgctccaatctagcacatgggacacaatccagacactagtgattaa
aaagacttgctaaggaactggaagtggtgatttcggggactcttgggctc
ctgtatgtgtcagtattgctgtgtgaatctctgctactctcccaggggtc
agtgacttccaactagctgtgtaaaccaccatcttggaaatgtcaggaaa
aaaaataaactaagtcagttttggaggggacatattaaaagacagcactt
gtagtaaaattagaaaaacatcagctgttttgtatggagtctccacagta
ttggccttttggcaataagagcacaaaaacaaaaactataaaaaccatgc
tttttatatacagggaaagagcatgtgaacagtttatgatctttcccata
agactgttacgggctctgattccataatcaacaggtcataattgattcga
acctatatgcagatgtctatccgtaatctcctcagcctttgatatttatt
gatggtctttgaccagctgctccagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101052661_101053494
seq2: B6Ng01-034L14.b_196_1014

seq1  TCCTCTTCTTTAGTATTTTCGAAGGCTTTGGGGATTGGTATTAGTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTTTAGTATTTTCGAAGGCTTTGGGGATTGGTATTAGTTCTTT  50

seq1  AAATGCTTGCTGCAATTCAGCAGTTGAGATCACTGGATGCTAGGATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTGCTGCAATTCAGCAGTTGAGATCACTGGATGCTAGGATTTTC  100

seq1  TTCAATGGGAAACTTTTTTGTTATATAGATCCAATCTTCTTACTCATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGGAAACTTTTTTGTTATATAGATCCAATCTTCTTACTCATAAT  150

seq1  GGATCTGTTCAGATTTCAATTTCTTCATAATTCAGTTCCTGCCAGTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGTTCAGATTTCAATTTCTTCATAATTCAGTTCCTGCCAGTTGTA  200

seq1  TATGCCTGGGAATTTATTCATTTCCTCTAGGTTATCCAATTTGTTTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGGGAATTTATTCATTTCCTCTAGGTTATCCAATTTGTTTGCAT  250

seq1  GTTATTCTTTGTAGTAATCTCTTATAATCCTTTGTGGTTGTTTGGTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTTTGTAGTAATCTCTTATAATCCTTTGTGGTTGTTTGGTACCA  300

seq1  AATATAATATTTCTTCTCACATTTCTACTTTTATTGATCCTCACTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATATTTCTTCTCACATTTCTACTTTTATTGATCCTCACTCTTCT  350

seq1  GTCTTTATTTAGGTATGGGTTTGTCAAATCACATCCACTAATATAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTTAGGTATGGGTTTGTCAAATCACATCCACTAATATAAAAAG  400

seq1  CAAGTCTTGGCTCTGTTGTTCTTTTCTACTTTTACTATAGTTCCTATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTGGCTCTGTTGTTCTTTTCTACTTTTACTATAGTTCCTATGCC  450

seq1  ATTCTTGGGTTCATTATTCTTTCTTTCTGTTCAATTGAAGCTTCCTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGGTTCATTATTCTTTCTTTCTGTTCAATTGAAGCTTCCTTTGT  500

seq1  CAATCTCTACACACGAGCTATTCTGGGAAAGGGCAGACTGGTTTGACTCC  550
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAATCTCTACACACGAGCTATTCTGGGGAAGGGCAGACTGGTTTGACTCC  550

seq1  CAGTCATCTTGAAAACCATCAT-GGAAATGCATGTGCCAGCCTGGAACAC  599
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGTCATCTTGAAAACCATCATGGGAAATGCATGTGCCAGCCTGGAACAC  600

seq1  TTGGATGGACTTAGAACTTGAAGCTTTGGGGTTTGCCTAAT-GTGGGGAC  648
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGGATGGACTTAGAACTTGAAGCTTTGGGGTTTGCCTAATGGTGGGGAC  650

seq1  AGGCTTGGGGCTTATGTGCTGAAGCAGTTCTAAATTCTAGGTCCATGGGA  698
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  AGGCTTGGGGCTTATGTGCTGAAGCAGTTTTAAA-TCTAGGTCCATGGGA  699

seq1  ACAGATCCCTAATTTTTGTCTCTTGGGACTATTTGCGTGGCATTTTCCTC  748
      |||||||||||| ||||||||| |||||||||||||||||||||   |||
seq2  ACAGATCCCTAA-TTTTGTCTC-TGGGACTATTTGCGTGGCATT---CTC  744

seq1  TGAATTTCAACATTCCCTTCCTCCAAATTGAAACAATTACTCTAGGAAGG  798
      |||||||| |||||||||  |||  || |||||| ||||||||||| |||
seq2  TGAATTTC-ACATTCCCT--CTC--AAATGAAAC-ATTACTCTAGG-AGG  787

seq1  ATTTGTGTCCATGTGTGTCTGTGCTTGCATGTTGCA  834
      | |||||| |||| |||| ||||| |||||||||||
seq2  A-TTGTGT-CATGGGTGT-TGTGC-TGCATGTTGCA  819

seq1: chr2_101161479_101162574
seq2: B6Ng01-034L14.g_72_1149 (reverse)

seq1  AAACTGGAGCAGGCTGTGTCAAAGTACATCACATAAATATTAAAAAGGCT  50
      ||||||||||| |||| |||||||  ||||| ||||||||   |||||||
seq2  AAACTGGAGCA-GCTG-GTCAAAGACCATCA-ATAAATAT--CAAAGGCT  45

seq1  GAAGAGATTAACAGAATAGACATCTG-ATATTATGGGTTTCGTAAATCAA  99
      || |||||||   | ||||||||||| ||||     | ||||  ||||||
seq2  GAGGAGATTA--CGGATAGACATCTGCATAT----AGGTTCG--AATCAA  87

seq1  TTTATGAACTGTGTGATATATGGAATCAAGAGCCCGTAACAGTCTTATGG  149
       |||||| |||| |||| ||||||||| ||||||||||||||||||||||
seq2  -TTATGACCTGT-TGAT-TATGGAATC-AGAGCCCGTAACAGTCTTATGG  133

seq1  GAAAGATCATAAACCTGTCACATGCTCTGTTCCCTGTATAT-AAAAGACT  198
      ||||||||||||||   ||||||||||| |||||||||||| |||||  |
seq2  GAAAGATCATAAACTGTTCACATGCTCT-TTCCCTGTATATAAAAAGCAT  182

seq1  GGTTTTTATAGTTTTTGTTTTTGTTGCTCTTGATTGCCAAAAGG-CAATA  247
      ||||||||||||||||||||||| ||||||| |||||||||||| |||||
seq2  GGTTTTTATAGTTTTTGTTTTTG-TGCTCTT-ATTGCCAAAAGGCCAATA  230

seq1  CTGTTGGAGACTTCATACAAAACAGCTGATGTTTTTCTAATTTTACTACA  297
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTG-TGGAGACTCCATACAAAACAGCTGATGTTTTTCTAATTTTACTACA  279

seq1  AGTGCTGTCTTTTAATATGTCCCCTCCAAAACTGACTTAGTTTATTTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTCTTTTAATATGTCCCCTCCAAAACTGACTTAGTTTATTTTTT  329

seq1  TTCCTGACATTTCCAAGATGGTGGTTTACACAGCTAGTTGGAAGTCACTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACATTTCCAAGATGGTGGTTTACACAGCTAGTTGGAAGTCACTG  379

seq1  ACCCCTGGGAGAGTAGCAGAGATTCACACAGCAATACTGACACATACAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGGGAGAGTAGCAGAGATTCACACAGCAATACTGACACATACAGG  429

seq1  AGCCCAAGAGTCCCCGAAATCACCACTTCCAGTTCCTTAGCAAGTCTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGAGTCCCCGAAATCACCACTTCCAGTTCCTTAGCAAGTCTTTT  479

seq1  TAATCACTAGTGTCTGGATTGTGTCCCATGTGCTAGATTGGAGCATCTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACTAGTGTCTGGATTGTGTCCCATGTGCTAGATTGGAGCATCTGA  529

seq1  ACACATCTGATTTTCAGCAAGCCATGTGAAATCCCATTCTGGGACACAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTGATTTTCAGCAAGCCATGTGAAATCCCATTCTGGGACACAGG  579

seq1  ACTATGAGGGTTCCAGATACTTTATGAAAACATACAGAACAAATGTCTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAGGGTTCCAGATACTTTATGAAAACATACAGAACAAATGTCTCA  629

seq1  TATTATATGAAGGGTGCTGGCTGTATGGAGTCTGCTGCATTTGGAGTCGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGAAGGGTGCTGGCTGTATGGAGTCTGCTGCATTTGGAGTCGT  679

seq1  GCCTTGTGGGCCGAATGCTGTCACCTTGAAACCATCCACACCATCATTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGGGCCGAATGCTGTCACCTTGAAACCATCCACACCATCATTAC  729

seq1  TGGGGTTTTCACAGTCTCCTTGTCCATAAGGCAAATATATGTAGGAGAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTTCACAGTCTCCTTGTCCATAAGGCAAATATATGTAGGAGAGT  779

seq1  CAGTCAAATACACTGCTTGCCCCTGAGCAATTTCCCAGAGCAAAGGATGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAATACACTGCTTGCCCCTGAGCAATTTCCCAGAGCAAAGGATGA  829

seq1  AATTTTAAAAAATCCAAAAAACAAGAGCTACTGTTACTTTCCATTCCCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAAAATCCAAAAAACAAGAGCTACTGTTACTTTCCATTCCCTT  879

seq1  AATGAGATGTGCATAGTATCAAATGAGAAAATAGATTTGAATATATTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGTGCATAGTATCAAATGAGAAAATAGATTTGAATATATTTTT  929

seq1  AAGTGTTCAAAGGAAGCAGATAGATAGTAGTAAAGATGATAAGCTCTGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCAAAGGAAGCAGATAGATAGTAGTAAAGATGATAAGCTCTGGA  979

seq1  ACCAAAAAAGCCTAACCCTCTCTCCTCTAACAGAGATATTTTTTTTCCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAGCCTAACCCTCTCTCCTCTAACAGAGATATTTTTTTTCCTC  1029

seq1  AAACCTCAGTTTCTCTGCCCATAAAAAGAACAATCATCTCAGAGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAGTTTCTCTGCCCATAAAAAGAACAATCATCTCAGAGAATTC  1078