BAC Information

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BAC

Clone NameB6Ng01-034O08
Chromosome2 (Build37)
Map Location 35,197,103 - 35,303,701
singlet/doubletdoublet
Overlap geneLOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom
Downstream geneLOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034O08.bB6Ng01-034O08.g
ACCDH863514DH863515
length1,030850
definitionDH863514|Mus musculus domesticus DNA, BAC clone: B6Ng01-034O08, 5' end.DH863515|Mus musculus domesticus DNA, BAC clone: B6Ng01-034O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,197,103 - 35,198,164)(35,302,852 - 35,303,701)
sequence
gaattcaaaaaaaaaaaggattttatttgtaattatgtgtttattgttag
gtatcaaacctgggacaaatggcccactgagatgcctatctaacatatca
aaacagacctggccagcaggttctcccagcatccctcagtctctacctgt
tactaggtatggctggcataccccactcctctaaacttctcccgctcagg
ggccaggctacccttcccccgcagctgcccttcctaaataatccagccat
ttcagtcaccctgccttccctgctctaccctttacactcctggttctccc
ctcctccctacaccctcccccttttccccccatggcctggctcagggtca
ggttcactctggactcccagaagtctctgcctctgtctattctttccctc
atatctacaatgaaccttcttctcctctattccttggagcagtcatgtct
atttatttgtttgtttatttatttgttattttattattgttcatacatgt
atgtgggactgtgcatgtgcaggtagtgctcatggagatcagaagatggt
gtctggaccagaaccctggagctggagaaacaggcagttgtgagttgccc
agcatgggtgctgaaaccaaactctggtcctctgagagagcatcacccct
cttgacaacacagtcatccttccaggccccagatggacatctttaaaagg
gtcttcatagctaaaaatcagaatactccttatggttttcttttatgttt
ctggttttggttatattattcaggtaccaatttcatactgattgatatag
ctggttgatgacattagattgtagagatggagctgagagtttgctgtgga
gtccattattgaatgagtcctaggaatttattagtcttttcttctgctca
taagaatgcttcagtaagcaggaaagtcttgacttcttgtcttaactact
gatcaagcttgtctgttgctcaaggaagccgcttctaatcatgcaaacct
tgggagacagctgcgttttgtgcatctgtc
gaattctttgaacagtgcttaatatttgctcagcatcccagggaagattg
gggccccttgcactgcttccaaacaacatatcagagacccacaactgagt
gacctccaggaacagggaggtactgattctcgggacaggtcattttcttc
ctcctgaccagcggctattgcatactaaattcaaaatggcttccctctgg
tgcccatggttagtctcggcctaacctcctgagctgtggtcagagggagc
agaccttctcaacagtgctgggccttcctttcttggagccagctgaaaat
aaatgcaaggctgtttcctttgttgctaggcaagatgtgctagggtcagg
ggacaggtgatcaacctgggtgcctggcttgacagaaacgactctgactt
gaacccacaactcactgggacccgagagtcagaacacagccctgctaatt
tgcatactgcttttttcttagcactcagggaactggtgttttggttgtta
cagtaaaatgactcaaatttcaggattctgtgggtcacatggcgagggca
gctgcccggggaagacatgcaacctcccagcttgctttcattttctcttc
tatccctgcagcaggtagagctatggctgactcatgatgggggctgcgct
agggcaaatccataatgactggaaaataaatataaatcgaaaattttgtt
agtgtggctagctagaggaactccgggctcagggccctatgtggagtatg
tgtagggtctcatttttttgattcaggattgggggtccagccactgccca
gtgtcattgatagggttcttactgcttaccattcacctagtagagatgca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35197103_35198164
seq2: B6Ng01-034O08.b_47_1076

seq1  GAATTCAAAAAAAAAAAGGATTTTATTTGTAATTATGTGTTTATTGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAAAAAAAGGATTTTATTTGTAATTATGTGTTTATTGTTAG  50

seq1  GTATCAAACCTGGGACAAATGGCCCACTGAGATGCCTATCTAACATATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAACCTGGGACAAATGGCCCACTGAGATGCCTATCTAACATATCA  100

seq1  AAACAGACCTGGCCAGCAGGTTCTCCCAGCATCCCTCAGTCTCTACCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACCTGGCCAGCAGGTTCTCCCAGCATCCCTCAGTCTCTACCTGT  150

seq1  TACTAGGTATGGCTGGCATACCCCACTCCTCTAAACTTCTCCCGCTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGTATGGCTGGCATACCCCACTCCTCTAAACTTCTCCCGCTCAGG  200

seq1  GGCCAGGCTACCCTTCCCCCGCAGCTGCCCTTCCTAAATAATCCAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTACCCTTCCCCCGCAGCTGCCCTTCCTAAATAATCCAGCCAT  250

seq1  TTCAGTCACCCTGCCTTCCCTGCTCTACCCTTTACACTCCTGGTTCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCACCCTGCCTTCCCTGCTCTACCCTTTACACTCCTGGTTCTCCC  300

seq1  CTCCTCCCTACACCCTCCCCCTTTTCCCCCCATGGCCTGGCTCAGGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTACACCCTCCCCCTTTTCCCCCCATGGCCTGGCTCAGGGTCA  350

seq1  GGTTCACTCTGGACTCCCAGAAGTCTCTGCCTCTGTCTATTCTTTCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACTCTGGACTCCCAGAAGTCTCTGCCTCTGTCTATTCTTTCCCTC  400

seq1  ATATCTACAATGAACCTTCTTCTCCTCTATTCCTTGGAGCAGTCATGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTACAATGAACCTTCTTCTCCTCTATTCCTTGGAGCAGTCATGTCT  450

seq1  ATTTATTTGTTTGTTTATTTATTTGTTATTTTATTATTGTTCATACATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGTTTGTTTATTTATTTGTTATTTTATTATTGTTCATACATGT  500

seq1  ATGTGGGACTGTGCATGTGCAGGTAGTGCTCATGGAGATCAGAAGATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGACTGTGCATGTGCAGGTAGTGCTCATGGAGATCAGAAGATGGT  550

seq1  GTCTGGACCAGAACCCTGGAGCTGGAGAAACAGGCAGTTGTGAGTTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGACCAGAACCCTGGAGCTGGAGAAACAGGCAGTTGTGAGTTGCCC  600

seq1  AGCATGGGTGCTGAAACCAAACTCTGGTCCTCTGAGAGAGCATCACCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGTGCTGAAACCAAACTCTGGTCCTCTGAGAGAGCATCACCCCT  650

seq1  CTTGACAACACAGTCATCCTTCCAGGCCCCAGATGGACATCTTTAAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAACACAGTCATCCTTCCAGGCCCCAGATGGACATCTTTAAAAGG  700

seq1  GTCTTCATAGCTAAAAATCAGAATACTCCTTATTGGTTTTCTTTTATGTT  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCTTCATAGCTAAAAATCAGAATACTCCTTA-TGGTTTTCTTTTATGTT  749

seq1  TCTGGTTTTTGGTTAATATATTCAGGGTACCAATTTCAATACTGATTGAT  800
      ||||| |||||||||   |||||| |||||||||||| ||||||||||||
seq2  TCTGG-TTTTGGTTATATTATTCA-GGTACCAATTTC-ATACTGATTGAT  796

seq1  ATAGCTGGTTGATGACATTAGGATGTAGAGATGGAGCTGAGAGATGTGCT  850
      |||||||||||||||||||||  |||||||||||||||||||| | ||||
seq2  ATAGCTGGTTGATGACATTAGATTGTAGAGATGGAGCTGAGAG-TTTGCT  845

seq1  GT-GAGTCCATAATTGAATGAGTCCTAAGGAAATTTAATTAGTCTTTTTC  899
      || |||||||| |||||||||||||| |||||  || ||||||| |||||
seq2  GTGGAGTCCATTATTGAATGAGTCCT-AGGAA--TTTATTAGTC-TTTTC  891

seq1  CTCTGCTCATAAGAAATGCTTCAGTAAAAGCAGGAAAGGTCTTGACTATC  949
       |||||||||||| |||||||||||  |||||||||| ||||||||| ||
seq2  TTCTGCTCATAAG-AATGCTTCAGT--AAGCAGGAAA-GTCTTGACT-TC  936

seq1  TTGTCCTTTAAACTACTGATCCAGGCTTGTTCTTGCTGCCTTCAAGGAAG  999
      |||||   | |||||||||| || ||||||   || |||  |||||||||
seq2  TTGTC---TTAACTACTGAT-CAAGCTTGT--CTGTTGC--TCAAGGAAG  978

seq1  CCAGCTAATCAAATACCATGCAGAAGCTGTGGAGTAACAAGCTGCGTTTT  1049
      || |||  || |||  |||||| || ||  ||||  || |||||||||||
seq2  CC-GCT--TCTAAT--CATGCA-AACCTTGGGAG--AC-AGCTGCGTTTT  1019

seq1  GTGCCAGTCTGTC  1062
      ||||   ||||||
seq2  GTGC--ATCTGTC  1030

seq1: chr2_35302852_35303701
seq2: B6Ng01-034O08.g_71_920 (reverse)

seq1  TGCATCTCTTCTAGGTGAATGGTATGCAGTAAGATACCCTATC-ATGACA  49
      ||||||||| |||||||||||||| ||||||||| |||||||| ||||||
seq2  TGCATCTCTACTAGGTGAATGGTAAGCAGTAAGA-ACCCTATCAATGACA  49

seq1  CTGGGCAGTGGCTGGACCCCCAATCCTGAATCAAAAAACTGAGACCCTAC  99
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGGGCAGTGGCTGGACCCCCAATCCTGAATCAAAAAAATGAGACCCTAC  99

seq1  ACATACTCCACATAGGGCCCTGAGCCCGGAGTTCCTCTAGCTAGCCACAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCCACATAGGGCCCTGAGCCCGGAGTTCCTCTAGCTAGCCACAC  149

seq1  TCAACAAATTTTCGATTTATATTTATTTTCCAGTCATTATGGATTTGCCC  199
      | |  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATTTTCGATTTATATTTATTTTCCAGTCATTATGGATTTGCCC  199

seq1  TAGCGCAGCCCCCATCATGAGTCAGCCATAGCTCTACCTGCTGCAGGGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCAGCCCCCATCATGAGTCAGCCATAGCTCTACCTGCTGCAGGGAT  249

seq1  AGAAGAGAAAATGAAAGCAAGCTGGGAGGTTGCATGTCTTCCCCGGGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAAATGAAAGCAAGCTGGGAGGTTGCATGTCTTCCCCGGGCAG  299

seq1  CTGCCCTCGCCATGTGACCCACAGAATCCTGAAATTTGAGTCATTTTACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCGCCATGTGACCCACAGAATCCTGAAATTTGAGTCATTTTACT  349

seq1  GTAACAACCAAAACACCAGTTCCCTGAGTGCTAAGAAAAAAGCAGTATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAACCAAAACACCAGTTCCCTGAGTGCTAAGAAAAAAGCAGTATGC  399

seq1  AAATTAGCAGGGCTGTGTTCTGACTCTCGGGTCCCAGTGAGTTGTGGGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCAGGGCTGTGTTCTGACTCTCGGGTCCCAGTGAGTTGTGGGTT  449

seq1  CAAGTCAGAGTCGTTTCTGTCAAGCCAGGCACCCAGGTTGATCACCTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGAGTCGTTTCTGTCAAGCCAGGCACCCAGGTTGATCACCTGTC  499

seq1  CCCTGACCCTAGCACATCTTGCCTAGCAACAAAGGAAACAGCCTTGCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACCCTAGCACATCTTGCCTAGCAACAAAGGAAACAGCCTTGCATT  549

seq1  TATTTTCAGCTGGCTCCAAGAAAGGAAGGCCCAGCACTGTTGAGAAGGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGCTGGCTCCAAGAAAGGAAGGCCCAGCACTGTTGAGAAGGTC  599

seq1  TGCTCCCTCTGACCACAGCTCAGGAGGTTAGGCCGAGACTAACCATGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTCTGACCACAGCTCAGGAGGTTAGGCCGAGACTAACCATGGGC  649

seq1  ACCAGAGGGAAGCCATTTTGAATTTAGTATGCAATAGCCGCTGGTCAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGGAAGCCATTTTGAATTTAGTATGCAATAGCCGCTGGTCAGGA  699

seq1  GGAAGAAAATGACCTGTCCCGAGAATCAGTACCTCCCTGTTCCTGGAGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAATGACCTGTCCCGAGAATCAGTACCTCCCTGTTCCTGGAGGT  749

seq1  CACTCAGTTGTGGGTCTCTGATATGTTGTTTGGAAGCAGTGCAAGGGGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTTGTGGGTCTCTGATATGTTGTTTGGAAGCAGTGCAAGGGGCC  799

seq1  CCAATCTTCCCTGGGATGCTGAGCAAATATTAAGCACTGTTCAAAGAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTTCCCTGGGATGCTGAGCAAATATTAAGCACTGTTCAAAGAATT  849

seq1  C  850
      |
seq2  C  850