BAC Information

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BAC

Clone NameB6Ng01-035I18
Chromosome1 (Build37)2 (Build37)
Map Location 51,904,858 - 51,905,954142,776,247 - 142,776,796
singlet/doubletsingletsinglet
Overlap geneMyo1b
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneEG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035I18.bB6Ng01-035I18.g
ACCDH863981DH863982
length1,086981
definitionDH863981|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I18, 5' end.DH863982|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,904,858 - 51,905,954)(142,776,247 - 142,776,796)
sequence
gaattcaaacctttaagtcatgattaataaaaattctaatattttctatc
agttccccaaagtattgtatgggatacatgtgccttacttttaggtatgt
gataatatagtcaggaaatatttgcttttaatgttcagctagtctgttct
gactgccaacaaatttgtgaagattcaagattatagtgtgctcgagatct
agtaatggagtatgagggaggggcgtgataaaggaattagcctgtgacta
aggcttgccaggacaaaagtttgtttccagatgctggcccagtctgatac
atgtcacatagctgtcctcgggctctcttccaacctgcttatatcacctt
ggcagcacctggtttataaggctactagatggggaagagaagtgctcctt
tgggccttcctcattggtctgtgcatagtcatgtgggctcactctacctg
cagaggaggctgggaaccaatcttcccttgtgccagcaagaggagtgcaa
agtgagatacagtgtctcaccgcagctcctgcctcctacatcattagtgc
atagttgttagtgtttgtcaactcagctcataggagccatgtaaaagctt
tagcatagattttagcctgagcaggatgttgtattttagtaagattgtgc
tcttcaaacacttcagttttttttcttataactgtaatcacagtgtattt
tcgtatttcccttttgatctcatttgaatatattcttgcagaaataaaac
cattggctcacttaccatgtttctgctcttatctctttgtctcacactac
tgtgctgaatagatagtgctaactttggtttattaggaacgaagggtttt
agcaacgtcacaattgctatgtgtagaacaaatcactttatgtatatttg
agatgtgactaaatgcttgatacatttctgtagtagatctggtttggcac
aaatcccttatgattttcttgacagtatttctattgggattctagacttg
ttcggtgctggatcttgtctgggattggcacaatgggtctctaccagctg
ggactgagccaagtgcattgagatctcacctcttcc
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaacgttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtaccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagaacaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacctgtctgtctctataccagtaccatgcagtttttaatcacagttt
ctctgtagtacagctttaggtcaggcatggtgattccaccagaggttctt
ttagtgttgagaatagtttttgctaacccaggtgttttgttattccagat
gaatttgcagattgcccttttctaattcgttgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgcttttggcagatagccatt
ttacaatgtgatcctgcaatccatgagcatgggagatctttccatcttct
gagatcttctttatttctttcttcagagacttgaagttttatcatacaga
tctttcacttcttattagagtcacgcgagtatttatattatttgtggact
attgagaggtgttgtttcctaatttctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51904858_51905954
seq2: B6Ng01-035I18.b_44_1129 (reverse)

seq1  GGAAGA-GTGAGATCTCAATTGCACTGGCTTCAGTCTCCAAGCTGGT-GA  48
      |||||| |||||||||||| |||||| |  ||||  ||| ||||||| ||
seq2  GGAAGAGGTGAGATCTCAA-TGCACTTGGCTCAG--TCCCAGCTGGTAGA  47

seq1  GAACCATGGTGCCAAAATCCCAGACAAGAT-CAGCACCGAAC-AGTCTAG  96
      || |||| |||||  ||||||||||||||| ||||||||||| |||||||
seq2  GACCCATTGTGCC--AATCCCAGACAAGATCCAGCACCGAACAAGTCTAG  95

seq1  AAATCCCAATAGAAATACTTGTTCCAAGAAAATCAATAAGGGATTTGTGC  146
       ||||||||||||||||| |||  |||||||||| |||||||||||||||
seq2  -AATCCCAATAGAAATAC-TGT--CAAGAAAATC-ATAAGGGATTTGTGC  140

seq1  CAAAACCAGATCTACTACAGAAATGTATCAAGCATTTAGTCACATCTTCA  196
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  C-AAACCAGATCTACTACAGAAATGTATCAAGCATTTAGTCACATC-TCA  188

seq1  AATAATAACATAAAGTTGATTTGTTCTACACATAGCAATTGTGACGTTGC  246
      ||||   |||||||| ||||||||||||||||||||||||||||||||||
seq2  AATA--TACATAAAG-TGATTTGTTCTACACATAGCAATTGTGACGTTGC  235

seq1  TAAAACCCTTCGTTCCTAATAAACCAAAGTTAGCACTATCTATTCAGCAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCTTCGTTCCTAATAAACCAAAGTTAGCACTATCTATTCAGCAC  285

seq1  AGTAGTGTGAGACAAAGAGATAAGAGCAGAAACATGGTAAGTGAGCCAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGTGAGACAAAGAGATAAGAGCAGAAACATGGTAAGTGAGCCAAT  335

seq1  GGTTTTATTTCTGCAAGAATATATTCAAATGAGATCAAAAGGGAAATACG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTCTGCAAGAATATATTCAAATGAGATCAAAAGGGAAATACG  385

seq1  AAAATACACTGTGATTACAGTTATAAGAAAAAAAACTGAAGTGTTTGAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACACTGTGATTACAGTTATAAGAAAAAAAACTGAAGTGTTTGAAG  435

seq1  AGCACAATCTTACTAAAATACAACATCCTGCTCAGGCTAAAATCTATGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATCTTACTAAAATACAACATCCTGCTCAGGCTAAAATCTATGCT  485

seq1  AAAGCTTTTACATGGCTCCTATGAGCTGAGTTGACAAACACTAACAACTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTACATGGCTCCTATGAGCTGAGTTGACAAACACTAACAACTA  535

seq1  TGCACTAATGATGTAGGAGGCAGGAGCTGCGGTGAGACACTGTATCTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAATGATGTAGGAGGCAGGAGCTGCGGTGAGACACTGTATCTCAC  585

seq1  TTTGCACTCCTCTTGCTGGCACAAGGGAAGATTGGTTCCCAGCCTCCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTCCTCTTGCTGGCACAAGGGAAGATTGGTTCCCAGCCTCCTCT  635

seq1  GCAGGTAGAGTGAGCCCACATGACTATGCACAGACCAATGAGGAAGGCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAGAGTGAGCCCACATGACTATGCACAGACCAATGAGGAAGGCCC  685

seq1  AAAGGAGCACTTCTCTTCCCCATCTAGTAGCCTTATAAACCAGGTGCTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCACTTCTCTTCCCCATCTAGTAGCCTTATAAACCAGGTGCTGC  735

seq1  CAAGGTGATATAAGCAGGTTGGAAGAGAGCCCGAGGACAGCTATGTGACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGATATAAGCAGGTTGGAAGAGAGCCCGAGGACAGCTATGTGACA  785

seq1  TGTATCAGACTGGGCCAGCATCTGGAAACAAACTTTTGTCCTGGCAAGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGACTGGGCCAGCATCTGGAAACAAACTTTTGTCCTGGCAAGCC  835

seq1  TTAGTCACAGGCTAATTCCTTTATCACGCCCCTCCCTCATACTCCATTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACAGGCTAATTCCTTTATCACGCCCCTCCCTCATACTCCATTAC  885

seq1  TAGATCTCGAGCACACTATAATCTTGAATCTTCACAAATTTGTTGGCAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCGAGCACACTATAATCTTGAATCTTCACAAATTTGTTGGCAGT  935

seq1  CAGAACAGACTAGCTGAACATTAAAAGCAAATATTTCCTGACTATATTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGACTAGCTGAACATTAAAAGCAAATATTTCCTGACTATATTAT  985

seq1  CACATACCTAAAAGTAAGGCACATGTATCCCATACAATACTTTGGGGAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCTAAAAGTAAGGCACATGTATCCCATACAATACTTTGGGGAAC  1035

seq1  TGATAGAAAATATTAGAATTTTTATTAATCATGACTTAAAGGTTTGAATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAAATATTAGAATTTTTATTAATCATGACTTAAAGGTTTGAATT  1085

seq1  C  1097
      |
seq2  C  1086

seq1: chr2_142776247_142776796
seq2: B6Ng01-035I18.g_507_1045 (reverse)

seq1  AGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGT-CACAAATAATAT  49
      |||||||||||| ||||||||||||  |||||||||| ||||||||||||
seq2  AGAAAGAAATTA-GGAAACAACACC--TCTCAATAGTCCACAAATAATAT  47

seq1  AAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATA  99
       ||||| ||| |||||||||||| ||| ||||||||||||||||||||| 
seq2  -AAATA-CTC-GCGTGACTCTAA-TAA-GAAGTGAAAGATCTGTATGAT-  91

seq1  AAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGG  149
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAACTTCAAGTCTCTGAAGAAAGAAA-TAAAGAAGATCTCAGAAGATGG  140

seq1  AAGGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGC  199
      || ||||||||||||||||||||| |||||||| ||||||| ||||||||
seq2  AAAGATCTCCCATGCTCATGGATT-GCAGGATC-ACATTGT-AAAATGGC  187

seq1  TATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTC  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATC-TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTC  236

seq1  CAACTCAATTCTTCAACGAATTAG-AAGGAGCAATTTGCAAATTCATCTG  298
      |||||||||||||||||||||||| || | ||||| ||||||||||||||
seq2  CAACTCAATTCTTCAACGAATTAGAAAAGGGCAATCTGCAAATTCATCTG  286

seq1  GAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAA  348
      ||||||||||| |||| || ||||||||| | |||||||   ||||||||
seq2  GAATAACAAAACACCTGGGTTAGCAAAAACTATTCTCAACACTAAAAGAA  336

seq1  CCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATT  398
      |||||||||||||||||||||||||||||||||| |||||||||| || |
seq2  CCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTACAGAGAAACT  386

seq1  GTGA-TAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAAT  447
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGATTAAAAACTGCATGGTACTGGTATAGAGACAGACAGGTAGACCAAT  436

seq1  GGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTG  486

seq1  ATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTT  547
       |||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTT  536

seq1  CAA  550
      |||
seq2  CAA  539