BAC Information

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BAC

Clone NameB6Ng01-037G17
Chromosome2 (Build37)
Map Location 180,163,239 - 180,300,522
singlet/doubletdoublet
Overlap geneSlco4a1, Ntsr1
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283
Downstream gene1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037G17.bB6Ng01-037G17.g
ACCDH865285DH865286
length723903
definitionDH865285|Mus musculus domesticus DNA, BAC clone: B6Ng01-037G17, 5' end.DH865286|Mus musculus domesticus DNA, BAC clone: B6Ng01-037G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,299,804 - 180,300,522)(180,163,239 - 180,164,138)
sequence
gaattcataacccagagcatatttttaaaagccagatatgttgggggggg
ggctagaaagatggttcagtagttaagagcactggctgctcttccagagg
gcccaggttcattttcctgcacctagatggtagctcataaccacctgtaa
ctccagatggatcttcagtgccttatttcaccctcctagggcatcgtcac
atgtagtacacaggcacacatccaagtcaaacacccatacaagtaaaaaa
aaattaaagatgcagatgtaataacatcgctgtgccattccactatgcct
gcagtgagaaggagggagacacaggagatccacgctaagtagtatgcagt
atggcagaaacaacagagagacccagattcaacaaaggaggggagaaagt
tgtcttctgacctccacacatggcacccccacctcacagcacgtatacac
aataaataagtaagaaagaactgaagtactaactcagcacaagatagacc
aagtattcaaaatggtctgatgactaagacagcaccctgtggtatggtta
agggaaggttttcattgtgcataagagagagaaaaaaatatatcttagag
gcatctggaagagtccagagcagagagaaaaggaaacagactagacctgg
tcagggctgtctggtcagagaagagagaatggtgagagtagggagagagc
aagagattagtggggggatgggg
gaattcagtgggtggttgtcaagtcaaagcatgacagttatctaaagtac
tgagagtgtgggggcctctgcaagacaggcagctggctccctccacccca
ccccctagccccagcctctccagggtcacagaacagcagaattcccagtc
agcctacagctctgtaggggctgagtttcatcagagactctgggacactc
ggccgcagccgccttgtcccagtgcccactccaaggctaagcttctggtt
ggctgtggccatcgagcctccttacagtaattgctctgatgatgctaaat
gtgtagactgctttcccggaaaactgctgacacacatgtctgggaaaggg
ggggctggtgagagacaacctgatccataggacgcctgatggctcagacc
ttaatcaatctctactcttgaagctaaaatagttgtgatttatgaaattc
tgcaagtcggatccctgcggcccatgcgttctgaacagcgaaggggaggg
ctcactggacagcctttctgctgtggtgtatccaccgcctcctcgacttc
tctgaggtccctctgttctccctggtctctcagtctctaaatgcaaatga
atacagcaaactgtatctccgctgggatctgccacactctcagctgcagc
ctttcaagagacctacttgactctttatcacttttgttctccagcagact
tctagatcatgacacacaggttcacacagttggttccttagcctggggcc
attctctctgcagggagaaatgccaactgagggaagagccattctctctg
gctctattcatgcaggacaaacacattttgtattaaggggttggttagaa
gttgacagaaatacagcttctatccagcttcaataattctcctaaggctt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180299804_180300522
seq2: B6Ng01-037G17.b_45_767 (reverse)

seq1  CCCCAT-CCCCCACT-ATCTCTTGCTCTCTCCCTACTCTCACCATTCTCT  48
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCCATCCCCCCACTAATCTCTTGCTCTCTCCCTACTCTCACCATTCTCT  50

seq1  CTTCTCTGA-CAGACAGCCCTGACCAGGTCTAGTCTGTTTCCTTTTCTCT  97
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGACCAGACAGCCCTGACCAGGTCTAGTCTGTTTCCTTTTCTCT  100

seq1  CTGCTCTGGACTCTTCCAGATGCCTCT-AGATATATTTTTTTCTCTCTCT  146
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGCTCTGGACTCTTCCAGATGCCTCTAAGATATATTTTTTTCTCTCTCT  150

seq1  TATGCACAATGAAAACCTTCCCTTAACCATACCACAGGGTGCTGTCTTAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAATGAAAACCTTCCCTTAACCATACCACAGGGTGCTGTCTTAG  200

seq1  TCATCAGACCATTTTGAATACTTGGTCTATCTTGTGCTGAGTTAGTACTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGACCATTTTGAATACTTGGTCTATCTTGTGCTGAGTTAGTACTT  250

seq1  CAGTTCTTTCTTACTTATTTATTGTGTATACGTGCTGTGAGGTGGGGGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTTCTTACTTATTTATTGTGTATACGTGCTGTGAGGTGGGGGTG  300

seq1  CCATGTGTGGAGGTCAGAAGACAACTTTCTCCCCTCCTTTGTTGAATCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTGGAGGTCAGAAGACAACTTTCTCCCCTCCTTTGTTGAATCTG  350

seq1  GGTCTCTCTGTTGTTTCTGCCATACTGCATACTACTTAGCGTGGATCTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCTGTTGTTTCTGCCATACTGCATACTACTTAGCGTGGATCTCC  400

seq1  TGTGTCTCCCTCCTTCTCACTGCAGGCATAGTGGAATGGCACAGCGATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCCCTCCTTCTCACTGCAGGCATAGTGGAATGGCACAGCGATGT  450

seq1  TATTACATCTGCATCTTTAATTTTTTTTTACTTGTATGGGTGTTTGACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATCTGCATCTTTAATTTTTTTTTACTTGTATGGGTGTTTGACTT  500

seq1  GGATGTGTGCCTGTGTACTACATGTGACGATGCCCTAGGAGGGTGAAATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGTGCCTGTGTACTACATGTGACGATGCCCTAGGAGGGTGAAATA  550

seq1  AGGCACTGAAGATCCATCTGGAGTTACAGGTGGTTATGAGCTACCATCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGAAGATCCATCTGGAGTTACAGGTGGTTATGAGCTACCATCTA  600

seq1  GGTGCAGGAAAATGAACCTGGGCCCTCTGGAAGAGCAGCCAGTGCTCTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGAAAATGAACCTGGGCCCTCTGGAAGAGCAGCCAGTGCTCTTA  650

seq1  ACTACTGAACCATCTTTCTAGCCCCCCCCCCAACATATCTGGCTTTTAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAACCATCTTTCTAGCCCCCCCCCCAACATATCTGGCTTTTAAA  700

seq1  AATATGCTCTGGGTTATGAATTC  719
      |||||||||||||||||||||||
seq2  AATATGCTCTGGGTTATGAATTC  723

seq1: chr2_180163239_180164138
seq2: B6Ng01-037G17.g_68_970

seq1  GAATTCAGTGGGTGGTTGTCAAGTCAAAGCATGACAGTTATCTAAAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGTGGTTGTCAAGTCAAAGCATGACAGTTATCTAAAGTAC  50

seq1  TGAGAGTGTGGGGGCCTCTGCAAGACAGGCAGCTGGCTCCCTCCACCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGTGGGGGCCTCTGCAAGACAGGCAGCTGGCTCCCTCCACCCCA  100

seq1  CCCCCTAGCCCCAGCCTCTCCAGGGTCACAGAACAGCAGAATTCCCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAGCCCCAGCCTCTCCAGGGTCACAGAACAGCAGAATTCCCAGTC  150

seq1  AGCCTACAGCTCTGTAGGGGCTGAGTTTCATCAGAGACTCTGGGACACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACAGCTCTGTAGGGGCTGAGTTTCATCAGAGACTCTGGGACACTC  200

seq1  GGCCGCAGCCGCCTTGTCCCAGTGCCCACTCCAAGGCTAAGCTTCTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCAGCCGCCTTGTCCCAGTGCCCACTCCAAGGCTAAGCTTCTGGTT  250

seq1  GGCTGTGGCCATCGAGCCTCCTTACAGTAATTGCTCTGATGATGCTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGCCATCGAGCCTCCTTACAGTAATTGCTCTGATGATGCTAAAT  300

seq1  GTGTAGACTGCTTTCCCGGAAAACTGCTGACACACATGTCTGGGAAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACTGCTTTCCCGGAAAACTGCTGACACACATGTCTGGGAAAGGG  350

seq1  GGGGCTGGTGAGAGACAACCTGATCCATAGGACGCCTGATGGCTCAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGTGAGAGACAACCTGATCCATAGGACGCCTGATGGCTCAGACC  400

seq1  TTAATCAATCTCTACTCTTGAAGCTAAAATAGTTGTGATTTATGAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAATCTCTACTCTTGAAGCTAAAATAGTTGTGATTTATGAAATTC  450

seq1  TGCAAGTCGGATCCCTGCGGCCCATGCGTTCTGAACAGCGAAGGGGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCGGATCCCTGCGGCCCATGCGTTCTGAACAGCGAAGGGGAGGG  500

seq1  CTCACTGGACAGCCTTTCTGCTGTGGTGTATCCACCGCCTCCTCGACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGACAGCCTTTCTGCTGTGGTGTATCCACCGCCTCCTCGACTTC  550

seq1  TCTGAGGTCCCTCTGTTCTCCCTGGTCTCTCAGTCTCTAAATGCAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCCCTCTGTTCTCCCTGGTCTCTCAGTCTCTAAATGCAAATGA  600

seq1  ATACAGCAAACTGTATCTCCGCTGGGATCTGCCACACTCTCAGCTGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAAACTGTATCTCCGCTGGGATCTGCCACACTCTCAGCTGCAGC  650

seq1  C-TTCAAGAGACCTACTTGACTC-TTATCACTTTTGTTCTCCAGCAGACT  698
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTTCAAGAGACCTACTTGACTCTTTATCACTTTTGTTCTCCAGCAGACT  700

seq1  TCTAGAACATGACACACAGGTTCACACAG-TGGT--CCTAGCCTGGGGCC  745
      |||||| |||||||||||||||||||||| ||||  | ||||||||||||
seq2  TCTAGATCATGACACACAGGTTCACACAGTTGGTTCCTTAGCCTGGGGCC  750

seq1  ATTCTCTCTGCAGGGAGAAATGCCAACTGAGGGAAGAGCCATTCTCTCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTGCAGGGAGAAATGCCAACTGAGGGAAGAGCCATTCTCTCTG  800

seq1  GCTCTATTCATGCAGGACAAACACA-TTTGTATTAAGGTGTTGGTTAGAA  844
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  GCTCTATTCATGCAGGACAAACACATTTTGTATTAAGGGGTTGGTTAGAA  850

seq1  GTTGACAGGAAATACCAGCTTCTATCCAGCTTCAATATATCTCCTAAGGC  894
      ||||||| |||||| ||||||||||||||||||||||  |||||||||||
seq2  GTTGACA-GAAATA-CAGCTTCTATCCAGCTTCAATAATTCTCCTAAGGC  898

seq1  TGTGTG  900
      | ||||
seq2  T-TGTG  903