BAC Information

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BAC

Clone NameB6Ng01-039K08
Chromosome2 (Build37)
Map Location 37,392,489 - 37,484,069
singlet/doubletdoublet
Overlap geneRabgap1, 6430510M02Rik, Strbp
Upstream geneOlfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Gpr21
Downstream geneLOC639491, Dennd1a, LOC100040947, Lhx2, Nek6, Psmb7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039K08.bB6Ng01-039K08.g
ACCDH866857DH866858
length1,1391,139
definitionDH866857|Mus musculus domesticus DNA, BAC clone: B6Ng01-039K08, 5' end.DH866858|Mus musculus domesticus DNA, BAC clone: B6Ng01-039K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,482,917 - 37,484,069)(37,392,489 - 37,393,650)
sequence
gaattcactctgtacaccagatatctgcctacctttgcctctcaagtact
ggaattaaaggcatgcatcaccactgcctggcttaaaagcgttcttaaga
gagaataataaatctgttttaggggctagacaaacctttttgttggggtc
tatttaaggaactatgcttttaagcaattcatcgagacttaaaaattaaa
aatcccgctttttcatagctcagtggaaatgaatttggtgatagaaactt
ggatttagtgtcatgtgacatctcaagtatgtgggttttattgttaatta
tgattaacttttgctgcttttgacgacctcaaccaattgtgaaattatgt
agcagttattatgagttgccttaaaaaaaagagaaaagatcaataaataa
gaaatatatttttatttattttacatatgtagttttaaaatttgggcttc
agaaaggaatagtgaatgaaccttaaggtaacgtttgcgatctcattact
ggaatcacatttctagtgttattattctagtgactaggttgtctagaagc
aaatttatattttagctacacacatatatttaacacatctaattttacta
ttgtataagagttacgacttttttagaccctgctcagttatccaattttt
ttctattaaaaaaagtttttattgctattgttcccagatgtccttctttg
tagcttgccaaaagaaacagtgcttgtatttattttgttaatctatgatg
gtgtacatgttcattaataagatctgagattgattatgagaagcagtagt
cactgattactttgctgaatgaattcctttacttttgcacagaatctgat
gactattgatgttaaataatgttttcttaattttaaaagaagcaacaaaa
ttattataaaattttctgtcttataagtacactcaatgctgctttctttt
gttgttattgataattttttaagaacaccctttcaaactgtttgtttcct
ttatcccatttactattagaaaatgttatgatgaagaccctccggactta
ttggaaaggcaaaatgcctgaatgccttggcttctcttcgacatgccaat
ggtcaggtgcccctattatttcttactgtttctgttagc
gaattcattgtggttgaattagaatgctttgggagtttagaactaggagc
tgttagtacttgacttaatgctcaactcatttctgatagactttcctctt
gaccacaggagacagtatggtgacagtgcctcttaccatgaagacattgg
gattggaaagatatattagcttcattcttttaacctcaaagtgttttagt
gaggcttgggtagcatccttttggttcttcttttaagatctgagagatta
atgagggaaaaaaaaatctgagagagcaggtgtggcccatgaatgtctaa
ttcatttaagcacctttttccccccccatgcaggcatattctgtgtatga
tgaagagattggttactgccagggccagtccttcctcgcagctgtactgc
ttctccacgtgagtagctgggtctgtgtcactgatccatgtgcctgccta
gacttaaggaaggcttgaggttgggcttggccacatccttagatagaatc
tttagcttgtgtatttacaaacttaattaactttaatggcactatgaaaa
aaatataacgaggatgagtggtaaagacctttactctacaacttcttcag
ttttttttttttttttcagaataatgtcagctaaacagccatattaagta
gtcttcatttgactgttagttactgatttatctttgtcttcatttttctt
ttcaacaaaaataacttactatcttttaaatgaaagtagtgaacatttga
gcttgtgtcttgtacggaccagggcattctgcatcataagtgtagtatga
tcacatcccacactgacgtcctgcctggcacacagtccccagtcagtgcc
cctcccagcagatgtgtgcttcattagctattggttattctgttgcatca
aacatactacgtgaatgttttagcagtgagctatatcccctgcccatatg
tggtcctttatggccgttactctgactgtgatccagcaacaagtcagtgc
tgcattgtttgtattctatcctacccctccatctaaccaccataaacccc
tgtttgtttccaaaaagatttaacaaatttgttctaaaaatgtctatttc
ttattcccaatcatttcatattactaagctgtctgtggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37482917_37484069
seq2: B6Ng01-039K08.b_47_1185 (reverse)

seq1  GCTATACAGAAACAGTAAAGAAATAATAGAGCGCCAACCTGGAACCATTT  50
      |||| ||||||||||| |||||||||||| | ||  |||||  |||| ||
seq2  GCTA-ACAGAAACAGT-AAGAAATAATAG-GGGC--ACCTG--ACCA-TT  42

seq1  GGCATGTCGAAGAGAAGCCAAGGCATTCAGGCATTTTTGCCTGTCCAATA  100
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  GGCATGTCGAAGAGAAGCCAAGGCATTCAGGCA-TTTTGCCTTTCCAATA  91

seq1  AGTCCGGAGGGTCTTTCATCATAACATTTTCTAATAGTAAATGGGATAAA  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTCCGGAGGGTC-TTCATCATAACATTTTCTAATAGTAAATGGGATAAA  140

seq1  GGAAAACAAACAGTTTGAAAGGGTGTTCTTAAAAAATTATCAATAACAAC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-AAACAAACAGTTTGAAAGGGTGTTCTTAAAAAATTATCAATAACAAC  189

seq1  AAAAAGAAAGCAGCATTTGAGTGTACTTATAAGACAGAAAATTTTATAAT  250
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -AAAAGAAAGCAGCA-TTGAGTGTACTTATAAGACAGAAAATTTTATAAT  237

seq1  AATTTTGTTGCTTCTTTTTAAAATTAAGAAAACATTATTTAACATCAATA  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTGCTTC-TTTTAAAATTAAGAAAACATTATTTAACATCAATA  286

seq1  GTCATCAGATTCTGTGCAAAAGTAAAGGAATTCATTCAGCAAAGTAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGATTCTGTGCAAAAGTAAAGGAATTCATTCAGCAAAGTAATCA  336

seq1  GTGACTACTGCTTCTCATAATCAATCTCAGATCTTATTAATGAACATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTACTGCTTCTCATAATCAATCTCAGATCTTATTAATGAACATGTA  386

seq1  CACCATCATAGATTAACAAAATAAATACAAGCACTGTTTCTTTTGGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCATAGATTAACAAAATAAATACAAGCACTGTTTCTTTTGGCAAG  436

seq1  CTACAAAGAAGGACATCTGGGAACAATAGCAATAAAAACTTTTTTTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGAAGGACATCTGGGAACAATAGCAATAAAAACTTTTTTTAATA  486

seq1  GAAAAAAATTGGATAACTGAGCAGGGTCTAAAAAAGTCGTAACTCTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATTGGATAACTGAGCAGGGTCTAAAAAAGTCGTAACTCTTATA  536

seq1  CAATAGTAAAATTAGATGTGTTAAATATATGTGTGTAGCTAAAATATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTAAAATTAGATGTGTTAAATATATGTGTGTAGCTAAAATATAAA  586

seq1  TTTGCTTCTAGACAACCTAGTCACTAGAATAATAACACTAGAAATGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTAGACAACCTAGTCACTAGAATAATAACACTAGAAATGTGAT  636

seq1  TCCAGTAATGAGATCGCAAACGTTACCTTAAGGTTCATTCACTATTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAATGAGATCGCAAACGTTACCTTAAGGTTCATTCACTATTCCTT  686

seq1  TCTGAAGCCCAAATTTTAAAACTACATATGTAAAATAAATAAAAATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCCCAAATTTTAAAACTACATATGTAAAATAAATAAAAATATAT  736

seq1  TTCTTATTTATTGATCTTTTCTCTTTTTTTTAAGGCAACTCATAATAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTATTGATCTTTTCTCTTTTTTTTAAGGCAACTCATAATAACT  786

seq1  GCTACATAATTTCACAATTGGTTGAGGTCGTCAAAAGCAGCAAAAGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATAATTTCACAATTGGTTGAGGTCGTCAAAAGCAGCAAAAGTTAA  836

seq1  TCATAATTAACAATAAAACCCACATACTTGAGATGTCACATGACACTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTAACAATAAAACCCACATACTTGAGATGTCACATGACACTAAA  886

seq1  TCCAAGTTTCTATCACCAAATTCATTTCCACTGAGCTATGAAAAAGCGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTTCTATCACCAAATTCATTTCCACTGAGCTATGAAAAAGCGGG  936

seq1  ATTTTTAATTTTTAAGTCTCGATGAATTGCTTAAAAGCATAGTTCCTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATTTTTAAGTCTCGATGAATTGCTTAAAAGCATAGTTCCTTAA  986

seq1  ATAGACCCCAACAAAAAGGTTTGTCTAGCCCCTAAAACAGATTTATTATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCCCAACAAAAAGGTTTGTCTAGCCCCTAAAACAGATTTATTATT  1036

seq1  CTCTCTTAAGAACGCTTTTAAGCCAGGCAGTGGTGATGCATGCCTTTAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAAGAACGCTTTTAAGCCAGGCAGTGGTGATGCATGCCTTTAAT  1086

seq1  TCCAGTACTTGAGAGGCAAAGGTAGGCAGATATCTGGTGTACAGAGTGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACTTGAGAGGCAAAGGTAGGCAGATATCTGGTGTACAGAGTGAA  1136

seq1  TTC  1153
      |||
seq2  TTC  1139

seq1: chr2_37392489_37393650
seq2: B6Ng01-039K08.g_65_1203

seq1  GAATTCATTGTGGTTGAATTAGAATGCTTTGGGAGTTTAGAACTAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGGTTGAATTAGAATGCTTTGGGAGTTTAGAACTAGGAGC  50

seq1  TGTTAGTACTTGACTTAATGCTCAACTCATTTCTGATAGACTTTCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTACTTGACTTAATGCTCAACTCATTTCTGATAGACTTTCCTCTT  100

seq1  GACCACAGGAGACAGTATGGTGACAGTGCCTCTTACCATGAAGACATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGAGACAGTATGGTGACAGTGCCTCTTACCATGAAGACATTGG  150

seq1  GATTGGAAAGATATATTAGCTTCATTCTTTTAACCTCAAAGTGTTTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAAAGATATATTAGCTTCATTCTTTTAACCTCAAAGTGTTTTAGT  200

seq1  GAGGCTTGGGTAGCATCCTTTTGGTTCTTCTTTTAAGATCTGAGAGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTGGGTAGCATCCTTTTGGTTCTTCTTTTAAGATCTGAGAGATTA  250

seq1  ATGAGGGAAAAAAAAATCTGAGAGAGCAGGTGTGGCCCATGAATGTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGAAAAAAAAATCTGAGAGAGCAGGTGTGGCCCATGAATGTCTAA  300

seq1  TTCATTTAAGCACCTTTTTCCCCCCCCATGCAGGCATATTCTGTGTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAAGCACCTTTTTCCCCCCCCATGCAGGCATATTCTGTGTATGA  350

seq1  TGAAGAGATTGGTTACTGCCAGGGCCAGTCCTTCCTCGCAGCTGTACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATTGGTTACTGCCAGGGCCAGTCCTTCCTCGCAGCTGTACTGC  400

seq1  TTCTCCACGTGAGTAGCTGGGTCTGTGTCACTGATCCATGTGCCTGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACGTGAGTAGCTGGGTCTGTGTCACTGATCCATGTGCCTGCCTA  450

seq1  GACTTAAGGAAGGCTTGAGGTTGGGCTTGGCCACATCCTTAGATAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAGGAAGGCTTGAGGTTGGGCTTGGCCACATCCTTAGATAGAATC  500

seq1  TTTAGCTTGTGTATTTACAAACTTAATTAACTTTAATGGCACTATGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTGTGTATTTACAAACTTAATTAACTTTAATGGCACTATGAAAA  550

seq1  AAATATAACGAGGATGAGTGGTAAAGACCTTTACTCTACAACTTCTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAACGAGGATGAGTGGTAAAGACCTTTACTCTACAACTTCTTCAG  600

seq1  TTTTTTTTTTTTTTTTCAGAATAATGTCAGCTAAACAGCCATATTAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTCAGAATAATGTCAGCTAAACAGCCATATTAAGTA  650

seq1  GTCTTCATTTGACTGTTAGTTACTGATTTATCTTTGTCTTCATTTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATTTGACTGTTAGTTACTGATTTATCTTTGTCTTCATTTTTCTT  700

seq1  TTCAACAAAAATAACTTACTATCTTTTAAATGAAAGTAGTGAACATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAAAATAACTTACTATCTTTTAAATGAAAGTAGTGAACATTTGA  750

seq1  GCTTGTGTCTTGTACGGACCAGGGCATTCTGCATCATAAGTGTAGTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTCTTGTACGGACCAGGGCATTCTGCATCATAAGTGTAGTATGA  800

seq1  TCACATCCCACACTGACGTCCTGCCTGGCACACAGTCCCCAGTCAGTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCCACACTGACGTCCTGCCTGGCACACAGTCCCCAGTCAGTGCC  850

seq1  CCTCCCAGCAGATGTGTGCTTCATTAGCTATTGGTTATTCTGTTGCATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGCAGATGTGTGCTTCATTAGCTATTGGTTATTCTGTTGCATCA  900

seq1  AACATACTAGGTGAATGTTTTAGCAGTGAGCTATATCCCCTGCCCATATG  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTACGTGAATGTTTTAGCAGTGAGCTATATCCCCTGCCCATATG  950

seq1  TGGTTCCTTTATGGCCGTTACTCTGACTGTGATCCAGCAACAAGTCAGGT  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGG-TCCTTTATGGCCGTTACTCTGACTGTGATCCAGCAACAAGTCA-GT  998

seq1  GCTGCATTTGTTTGTATTCTATCCTTACACTTCATCTAAACCACCATAAT  1050
      |||||| ||||||||||||||||||  | || ||||| ||||||||||| 
seq2  GCTGCA-TTGTTTGTATTCTATCCTACCCCTCCATCT-AACCACCATAA-  1045

seq1  ACCTCTGTTTGTTTCCAAAAAAAGATTTAACCATATTGTTTCATAAAATA  1100
      ||| ||||||||||||  ||||||||||||| |  |||||   ||||| |
seq2  ACCCCTGTTTGTTTCC--AAAAAGATTTAACAAATTTGTT--CTAAAA-A  1090

seq1  TGTCATATTCTTAATTTCCCCAATCATTTTCTCATTATTTAACTTAAAAG  1150
      ||||   ||||||   | ||||||||||   ||| ||||  |||   |||
seq2  TGTCTATTTCTTA---TTCCCAATCATT---TCA-TATT--ACT---AAG  1128

seq1  TCTGTCTGTGGC  1162
       |||||||||||
seq2  -CTGTCTGTGGC  1139