BAC Information

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BAC

Clone NameB6Ng01-039P13
Chromosome2 (Build37)4 (Build37)
Map Location 54,695,826 - 54,696,21214,776,651 - 14,776,967
singlet/doubletsingletsinglet
Overlap geneGalnt13
Upstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039P13.bB6Ng01-039P13.g
ACCDH867081DH867082
length539311
definitionDH867081|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P13, 5' end.DH867082|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,695,826 - 54,696,212)(14,776,651 - 14,776,967)
sequence
actgtttttaatagctgagtagtattccattgagtaaatggaaccacatt
ttctgtatccattcctctgttgaaagacatctgggttctttccagtttct
ggctattataaataaggctgctatgagcatagtggagcctgtgtccttgt
tatatgttggagcatcttttgggtatatatgcccaggagtggtattgcta
ggtcctcaggtaatagaagatcagtatcaactaaccagagctcccagggt
gtaaaccaccaaccaaggagtactcatggaggtaaccaaggttccagcca
catatgtagcagaggatggctttttccagcatcaatgggcagagaggccc
ttggtcccttgaaagctcgatgccccagtgtaggggaattcaagggtggg
gaggcaggagtgggtggttttggccacatcctcatagaaacaggaggagg
ggggatgggataggcagtttcggggggatcaggaaaggaaattacatttg
aaatgtaagtaaatataatgttctttaaaaaattttttt
tcatttgtttctatcttatgtggtttgacgaatatcagcctgcatttgaa
aacctaacaaaatagctccataaaaattctccaggacaccattaaaaata
ggtttttcttttgtataaagaagaatgagctaatgtagctgtgactgaat
aatcctctctcctccaaattgcctcaacctcatgctgtatgtattcaaag
gaagggcattcgatgtgtgacgaggttgatgagataataaagatggagcc
ctaattgaacagaatctctctctctctctctctctctctctctctctctc
tctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54695826_54696212
seq2: B6Ng01-039P13.b_545_590 (reverse)

seq1  AAAAAAATTTTTTAAAGAAGTGAGTTTTAACTTCCTAGCCAGCATTCTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTTTATTGTCTGACAGTTCTGTAACTATATGAAATGTTTATATGACTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CGTTTACGATTTCTCCTGAGAACCAGAGTCCATGCTCTGCCTATAGACAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAAAATTTATAGTGTAGCCTTTAAGTTTTATCATTAATATGAACTACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TAAACAATGGTTACAGAAGTCAAATTTTAATAATTCTATTTGAACAATTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAAAATAACAATATTGATTTGTGGAATATTGCTTAAAGTGTATTAGCA  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTTATAATTATTTACATATTTATTTATTTTTCTTTTGTATTATTATTATT  350
                                               |  |  |||
seq2  -----------------------------------------AAAAAAATT  9

seq1  TTTATTTGGATATTTTATTTACTTACATTTCAAATGT  387
      |||    | | ||| ||||||||||||||||||||||
seq2  TTTTAAAGAACATTATATTTACTTACATTTCAAATGT  46

seq1: chr4_14776651_14776967
seq2: B6Ng01-039P13.g_68_384 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTC  50

seq1  TGTTCAATTAGGGCTCCATCTTTATTATCTCATCAACCTCGTCACACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATTAGGGCTCCATCTTTATTATCTCATCAACCTCGTCACACATC  100

seq1  GAATGCCCTTCCTTTGAATACATACAGCATGAGGTTGAGGCAATTTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCCTTCCTTTGAATACATACAGCATGAGGTTGAGGCAATTTGGAG  150

seq1  GAGAGAGGATTATTCAGTCACAGCTACATTAGCTCATTCTTCTTTATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGATTATTCAGTCACAGCTACATTAGCTCATTCTTCTTTATACA  200

seq1  AAAGAAAAACCTATTTTTAATGGTGTCCTGGAGAATTTTTATGGAGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAACCTATTTTTAATGGTGTCCTGGAGAATTTTTATGGAGCTAT  250

seq1  TTTGTTAGGTTTTCAAATGCAGGCTGATATTCGTCAAACCACATAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGGTTTTCAAATGCAGGCTGATATTCGTCAAACCACATAAGATA  300

seq1  GAAACAAATGAGAATTC  317
      |||||||||||||||||
seq2  GAAACAAATGAGAATTC  317