BAC Information

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BAC

Clone NameB6Ng01-040B04
Chromosome2 (Build37)
Map Location 84,074,079 - 84,225,540
singlet/doubletdoublet
Overlap geneCalcrl
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725
Downstream geneTfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040B04.bB6Ng01-040B04.g
ACCDH867154DH867155
length1,098897
definitionDH867154|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B04, 5' end.DH867155|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,074,079 - 84,075,207)(84,224,642 - 84,225,540)
sequence
gaattctctaaatattaaaattacattaatagaatggcttagaataagaa
ttgagttctggaaactttttaaatcctcctttatctaagttacctatttc
ttaaaccagaacaacaatgaaagttaaatttattatattatgaagagttc
agataaaaaaaatgagtaatctgaagcaggttgactctaatcacagctga
aataagtgggttgaattggtttacaaagagaataaatggaaatccatagc
tatcagtgcatttcacataagattctgaatttcgtagtgaaggcagtata
tggtaaaggagcatactgaactttaataatgatgtcttctttagtatgca
agttctgtaaatgttcatcttcatcagaatttaaaatatgactcaaaagc
taaaattattcattatgtaaatgcatgcttacatataatatcccctgaag
gagtggctgtattgactcttattcttagatgatatctccatgattttttt
tttaatctcctgaaacagagtctcactatgtagctctggctgtcccagaa
ttcactgtgtagaccagactggtgtcaaatacacataaccatcctaaaac
tcactgtgtagaccaggctggtatcaaacccacatatatctgcctacatc
tgcctctgcctctcaatgccgggattcttaaccaaaacaatagttttgtc
ttttatgtcatggaatctattctcattctccctgagaaatatcagaaaaa
aatgggacattttgcttgtttttctttactttttctcacatactgaactg
gagagaagaaaatccttgtcccaaatataaagagttgatcctagaataat
ttgcatgtacataaatgtgggtttgtgtcttttattttctatataattct
tttcattatatctacttgttttgtattctataaacatcatccttggcatt
taatgtgtgtatagtgcactgtgtatcactctcactggcagtggactgag
ggatggagccttaaacaagtggactaaagtctcatgcgtaccattttatt
cgagattgacattatactctatggttagaaaatcgatgagtaaggtct
gaattctgactgtgtaactctgactatataactatgcctcacacagccta
aatcagaggttttgcttgcctgacctgagttcagtcacatcttacttcaa
ttaattctttcctcatcagatgtggagagctttccatcaagcacaaagct
acattttttttttaagctccctcccaccttttactaatctggctgatatt
ggccacttgcctcttcaaataaaaagagtgtggctaaaatgaccggaaaa
tggctaattatgcccacaatggaaagattattcccatgagtaaatactcc
agagtgtaaaatgaaatcccaaacccaatcacaaatgaatctctctaaca
gctattcagctgttctgcctggaatgctcattagataagcaagtcagcca
ctggggttctttgccttgtgttcgaactcaatgtcattcaaggctatccc
agcatgccttagagttaaattaggaggctccatagccaccttgtttttaa
agtcatatatatacagcattctaacttcagtagaatcacacatatatatt
atactatatatattactatagtaatatattgtataaagttaatatatatt
atactctctctctctctctctctctctctctctctctctctatatatata
tatatatatatatatatatatatatatatatatatgaactatatccatag
actgtatacaaagaaaaagagatgctagaacttcagtttatgtaggctta
ctctatatagcccaatgttccattttaattgtcagattcaaacttaagag
tcttgaacttattagcaattggagaccaaggagaattttttctaagacat
taaagacaaacagacaaaatcagtgtcggagatttgttttaaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84074079_84075207
seq2: B6Ng01-040B04.b_42_1139

seq1  GAATTCTCTAAATATTAAAATTACATTAATAGAATGGCTTAGAATAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAATATTAAAATTACATTAATAGAATGGCTTAGAATAAGAA  50

seq1  TTGAGTTCTGGAAACTTTTTAAATCCTCCTTTATCTAAGTTACCTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTGGAAACTTTTTAAATCCTCCTTTATCTAAGTTACCTATTTC  100

seq1  TTAAACCAGAACAACAATGAAAGTTAAATTTATTATATTATGAAGAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCAGAACAACAATGAAAGTTAAATTTATTATATTATGAAGAGTTC  150

seq1  AGATAAAAAAAATGAGTAATCTGAAGCAGGTTGACTCTAATCACAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAAAAATGAGTAATCTGAAGCAGGTTGACTCTAATCACAGCTGA  200

seq1  AATAAGTGGGTTGAATTGGTTTACAAAGAGAATAAATGGAAATCCATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGGGTTGAATTGGTTTACAAAGAGAATAAATGGAAATCCATAGC  250

seq1  TATCAGTGCATTTCACATAAGATTCTGAATTTCGTAGTGAAGGCAGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGCATTTCACATAAGATTCTGAATTTCGTAGTGAAGGCAGTATA  300

seq1  TGGTAAAGGAGCATACTGAACTTTAATAATGATGTCTTCTTTAGTATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGGAGCATACTGAACTTTAATAATGATGTCTTCTTTAGTATGCA  350

seq1  AGTTCTGTAAATGTTCATCTTCATCAGAATTTAAAATATGACTCAAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTAAATGTTCATCTTCATCAGAATTTAAAATATGACTCAAAAGC  400

seq1  TAAAATTATTCATTATGTAAATGCATGCTTACATATAATATCCCCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATTCATTATGTAAATGCATGCTTACATATAATATCCCCTGAAG  450

seq1  GAGTGGCTGTATTGACTCTTATTCTTAGATGATATCTCCATGATTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCTGTATTGACTCTTATTCTTAGATGATATCTCCATGATTTTTTT  500

seq1  TTTAATCTCCTGAAACAGAGTCTCACTATGTAGCTCTGGCTGTCCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCCTGAAACAGAGTCTCACTATGTAGCTCTGGCTGTCCCAGAA  550

seq1  TTCACTGTGTAGACCAGACTGGTGTCAAATACACATAACCATCCTAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTGTAGACCAGACTGGTGTCAAATACACATAACCATCCTAAAAC  600

seq1  TCACTGTGTAGACCAGGCTGGTATCAAACCCACATATATCTGCCTACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGTAGACCAGGCTGGTATCAAACCCACATATATCTGCCTACATC  650

seq1  TGCCTCTGCCTCTCAATGCCGGGATTCTTAACCAAAACAATAGTTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCTCAATGCCGGGATTCTTAACCAAAACAATAGTTTTGTC  700

seq1  TTTTATGTCATGGAATCTATTCTCATTCTCCCTGAGAAATATCAGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTCATGGAATCTATTCTCATTCTCCCTGAGAAATATCAGAAAAA  750

seq1  AATGGGACATTTTGCTTGTTTTTCTTTACTTTTTCTCACATACTGAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACATTTTGCTTGTTTTTCTTTACTTTTTCTCACATACTGAACTG  800

seq1  GAGAGAAGAAAATCCTTGTCCCAAATATAAAGAGTTGATCCTAGAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGAAAATCCTTGTCCCAAATATAAAGAGTTGATCCTAGAATAAT  850

seq1  TTGCATGTACATAAATGTGGTTTTGTGTCTTTTATTTTTCTATATAATTT  900
      |||||||||||||||||||| ||||||||||||| |||||||||||||| 
seq2  TTGCATGTACATAAATGTGGGTTTGTGTCTTTTA-TTTTCTATATAATT-  898

seq1  CTTTTTCATTATATCTACTTGTTTTTGTAATTCTTATTAAACATCATCCT  950
        ||||||||||||||||||| |||||| |||||   |||||||||||||
seq2  -CTTTTCATTATATCTACTTG-TTTTGT-ATTCT--ATAAACATCATCCT  943

seq1  TGGCAATTTTATATGTGTGTATAGTGCACTGTTGTTAATCACTCTCACTG  1000
      |||||  |||| ||||||||||||||||||| |||  |||||||||||||
seq2  TGGCA--TTTA-ATGTGTGTATAGTGCACTG-TGT--ATCACTCTCACTG  987

seq1  GCAGTGGAACCTGAGGGAATGGAGCCTTAAAACAAGGTGGACTAAAGTCT  1050
      ||||||||  ||||||| |||||||||| |||||| ||||||||||||||
seq2  GCAGTGGA--CTGAGGG-ATGGAGCCTT-AAACAA-GTGGACTAAAGTCT  1032

seq1  CATGCAGTAACCAATTTTATTCAGAGAATCAGACAATTAATACTCTAATG  1100
      ||||| |||  | ||||||||| |||| |  ||||  | ||||||| |||
seq2  CATGC-GTA--CCATTTTATTC-GAGATT--GACA--TTATACTCT-ATG  1073

seq1  GTTAAGAGAAATCAGATGAGTAAAGGTCT  1129
      ||| ||| ||||| ||||||| |||||||
seq2  GTT-AGA-AAATC-GATGAGT-AAGGTCT  1098

seq1: chr2_84224642_84225540
seq2: B6Ng01-040B04.g_69_965 (reverse)

seq1  AAAATCTTAAAACAAATCTCCTGACACTGATTTTGTCTGTTTGTTCTTAA  50
      ||||| ||||||||||||||| ||||||||||||||||||||||  ||||
seq2  AAAAT-TTAAAACAAATCTCC-GACACTGATTTTGTCTGTTTGTCTTTAA  48

seq1  TGTCTTAG-AAATATTCTCCTTGGGTCTCCAATTGCTAAT-AGTTCAAGA  98
      |||||||| ||| ||||||||| ||||||||||||||||| |||||||||
seq2  TGTCTTAGAAAAAATTCTCCTT-GGTCTCCAATTGCTAATAAGTTCAAGA  97

seq1  CTCTTAAGTTTGAATCTGACAATTAAAATGGAACATTGGGCTATATAAGA  148
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTTAAGTTTGAATCTGACAATTAAAATGGAACATTGGGCTATAT-AGA  146

seq1  GTAAGCCTACATAAACTGAAGTTCTAGCA-ATCTTTTTTTTTGTATACAG  197
      |||||||||||||||||||||||||||||  ||||||| |||||||||||
seq2  GTAAGCCTACATAAACTGAAGTTCTAGCATCTCTTTTTCTTTGTATACAG  196

seq1  TTTATGGAAATAGTATCATATATATATATATATATATATATATATATATA  247
      | |||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TCTATGGATATAGT-TCATATATATATATATATATATATATATATATATA  245

seq1  TATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGT  297
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGT  295

seq1  ATAATATATATTAACTTTATACAATATATTACTATAGTAATATATATAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATATTAACTTTATACAATATATTACTATAGTAATATATATAGT  345

seq1  ATAATATATATGTGTGATTCTACTGAAGTTAGAATGCTGTATATATATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATATGTGTGATTCTACTGAAGTTAGAATGCTGTATATATATGA  395

seq1  CTTTAAAAACAAGGTGGCTATGGAGCCTCCTAATTTAACTCTAAGGCATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAACAAGGTGGCTATGGAGCCTCCTAATTTAACTCTAAGGCATG  445

seq1  CTGGGATAGCCTTGAATGACATTGAGTTCGAACACAAGGCAAAGAACCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATAGCCTTGAATGACATTGAGTTCGAACACAAGGCAAAGAACCCC  495

seq1  AGTGGCTGACTTGCTTATCTAATGAGCATTCCAGGCAGAACAGCTGAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGACTTGCTTATCTAATGAGCATTCCAGGCAGAACAGCTGAATA  545

seq1  GCTGTTAGAGAGATTCATTTGTGATTGGGTTTGGGATTTCATTTTACACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGAGAGATTCATTTGTGATTGGGTTTGGGATTTCATTTTACACT  595

seq1  CTGGAGTATTTACTCATGGGAATAATCTTTCCATTGTGGGCATAATTAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTATTTACTCATGGGAATAATCTTTCCATTGTGGGCATAATTAGC  645

seq1  CATTTTCCGGTCATTTTAGCCACACTCTTTTTATTTGAAGAGGCAAGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCGGTCATTTTAGCCACACTCTTTTTATTTGAAGAGGCAAGTGG  695

seq1  CCAATATCAGCCAGATTAGTAAAAGGTGGGAGGGAGCTTAAAAAAAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATCAGCCAGATTAGTAAAAGGTGGGAGGGAGCTTAAAAAAAAAAT  745

seq1  GTAGCTTTGTGCTTGATGGAAAGCTCTCCACATCTGATGAGGAAAGAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTGTGCTTGATGGAAAGCTCTCCACATCTGATGAGGAAAGAATT  795

seq1  AATTGAAGTAAGATGTGACTGAACTCAGGTCAGGCAAGCAAAACCTCTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGTAAGATGTGACTGAACTCAGGTCAGGCAAGCAAAACCTCTGA  845

seq1  TTTAGGCTGTGTGAGGCATAGTTATATAGTCAGAGTTACACAGTCAGAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCTGTGTGAGGCATAGTTATATAGTCAGAGTTACACAGTCAGAAT  895

seq1  TC  899
      ||
seq2  TC  897