BAC Information

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BAC

Clone NameB6Ng01-041D16
Chromosome2 (Build37)3 (Build37)
Map Location 142,776,479 - 142,776,99949,713,187 - 49,714,145
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041D16.bB6Ng01-041D16.g
ACCDH867949DH867950
length763955
definitionDH867949|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D16, 5' end.DH867950|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,479 - 142,776,999)(49,713,187 - 49,714,145)
sequence
ggaattctttgttcagttctgagccccattttttaatggggttgtttgat
tttctgaagtccaccttcttgagttctttatatatgttggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttc
attaggtcccatttgtcaattctcgatcttacagcacaagccattgctgt
tctgttcaggaatttttcccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttctttg
atccatttagatttgaccttagtacaaggagataagtatggatcgattcg
cattcttctacatgataacaaccagttgtgccagcaccatttgttgaaaa
tgctgtctttcttccactggatggttttagctcccttgtcgaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaatcctattccattg
gtctacttgtctgtctctataccagtaccatgcagtttttaccacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggtactt
tttatccttgagaagagtttttgctatcctaggttttttgttattccaga
tgaatttgcaaattgctccttcttattcattgaagaatttgagttggaat
tttgatgggtatt
tattcagaaaacaacatggctcaatccatcagaactctggaaggggactt
cgaataacgaataactattactctcaaagggcatgttataaaacccagca
cctcatccgcgattctcgccattcatgtgctttcagagacatgagtctct
gctgcttccacagaacaggaaatcagagcttcttactcacagagaaaatg
gctagtatagactttgcctggagacacaaaggggtatagtagaaattcag
aaaagaaacaggaactttcttaatgtgataaaaccaagagaagacactat
gaatgtagttcagcccctggagtgcagtgaccaatcactcagaatgtaga
tggcccctcccccccccctagttcactgctcttctgtcaattatcttcta
ttgattaggaattccacatcactcacttccttttgaaagtattgctcaga
tttttcggacttagcccacattcataattcctccacaaatatcagttagt
cttctgtggcaatacccgttttcatgacatactctaaagatgctgctgta
gcctccatttctagctctctgctcctcacagtgtacctcacagcattcag
cttcaagtttccaggtctatgtaactaaactaagcttaaagaaagacaaa
aactaccactcagaggtccctctttgcaaggtcaccgccatttgttttta
agtcaaaatcaggggcagtttcagcatccccttattctctgtctgttgtc
agtgggcccctcatatcacctcaccttcttgaaagcctgatttggtggcc
attactgagcctgtggagttatttttcagggtcacttctttccccatctg
ggattaatcttgatgctttgcagtataccataccaaatgtacctctttcc
acatgctctcgtgtttgtatagcctgggagcacaaaaatactggataatc
cccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776479_142776999
seq2: B6Ng01-041D16.b_282_804 (reverse)

seq1  AATCCCCATCAAAATTCCAACTC-AATTCTTCAACGAATTAGAAGGAGCA  49
      ||| ||||||||||||||||||| |||||||||| |||| ||||||||||
seq2  AATACCCATCAAAATTCCAACTCAAATTCTTCAATGAATAAGAAGGAGCA  50

seq1  ATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCT  99
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCT  100

seq1  TCTCAAGGAT-AAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAG  148
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  TCTCAAGGATAAAAAGTACCTCTGGTGGAATCACCATGCCTGACCTAAAG  150

seq1  CTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGA  198
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTTACTACAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGA  200

seq1  CAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCAC  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGACAAGTAGACCAATGGAATAGGATTGAAGACCCAGAAATGAACCCAC  250

seq1  ACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGG  300

seq1  AAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATC  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATC  350

seq1  ATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCA  398
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCA  400

seq1  AATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTT  448
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  AATCTAAATGGATCAAAGAACTTCACATAAAACCAGAGACACTGAAACTT  450

seq1  ATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAA  500

seq1  ATTCCTGAACAGAACAGCAATGG  521
      |||||||||||||||||||||||
seq2  ATTCCTGAACAGAACAGCAATGG  523

seq1: chr3_49713187_49714145
seq2: B6Ng01-041D16.g_78_1032

seq1  TATTCAGAAAACAACATGGCTCAATCCATCAGAACTCTGGAAGGGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAAAACAACATGGCTCAATCCATCAGAACTCTGGAAGGGGACTT  50

seq1  CGAATAACGAATAACTATTACTCTCAAAGGGCATGTTATAAAACCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAACGAATAACTATTACTCTCAAAGGGCATGTTATAAAACCCAGCA  100

seq1  CCTCATCCGCGATTCTCGCCATTCATGTGCTTTCAGAGACATGAGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCGCGATTCTCGCCATTCATGTGCTTTCAGAGACATGAGTCTCT  150

seq1  GCTGCTTCCACAGAACAGGAAATCAGAGCTTCTTACTCACAGAGAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCCACAGAACAGGAAATCAGAGCTTCTTACTCACAGAGAAAATG  200

seq1  GCTAGTATAGACTTTGCCTGGAGACACAAAGGGGTATAGTAGAAATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTATAGACTTTGCCTGGAGACACAAAGGGGTATAGTAGAAATTCAG  250

seq1  AAAAGAAACAGGAACTTTCTTAATGTGATAAAACCAAGAGAAGACACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACAGGAACTTTCTTAATGTGATAAAACCAAGAGAAGACACTAT  300

seq1  GAATGTAGTTCAGCCCCTGGAGTGCAGTGACCAATCACTCAGAATGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGTTCAGCCCCTGGAGTGCAGTGACCAATCACTCAGAATGTAGA  350

seq1  TGGCCCCTCCCCCCCCCCTAGTTCACTGCTCTTCTGTCAATTATCTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTCCCCCCCCCCTAGTTCACTGCTCTTCTGTCAATTATCTTCTA  400

seq1  TTGATTAGGAATTCCACATCACTCACTTCCTTTTGAAAGTATTGCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAGGAATTCCACATCACTCACTTCCTTTTGAAAGTATTGCTCAGA  450

seq1  TTTTTCGGACTTAGCCCACATTCATAATTCCTCCACAAATATCAGTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGGACTTAGCCCACATTCATAATTCCTCCACAAATATCAGTTAGT  500

seq1  CTTCTGTGGCAATACCCGTTTTCATGACATACTCTAAAGATGCTGCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGCAATACCCGTTTTCATGACATACTCTAAAGATGCTGCTGTA  550

seq1  GCCTCCATTTCTAGCTCTCTGCTCCTCACAGTGTACCTCACAGCATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATTTCTAGCTCTCTGCTCCTCACAGTGTACCTCACAGCATTCAG  600

seq1  CTTCAAGTTTCCAGGTCTATGTAACTAAACTAAGCTTAAAGAAAGAC-AA  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTCAAGTTTCCAGGTCTATGTAACTAAACTAAGCTTAAAGAAAGACAAA  650

seq1  AACTACCACTCAGAGGTCCCTCTTTGCAAGGTCACCGCCA-TTGTTATTA  698
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  AACTACCACTCAGAGGTCCCTCTTTGCAAGGTCACCGCCATTTGTTTTTA  700

seq1  AGTCAAAATCAGGGGCAGTTTCAGCATCCCCTTATTCTCTGTCTGTTGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAATCAGGGGCAGTTTCAGCATCCCCTTATTCTCTGTCTGTTGTC  750

seq1  AGTGGGCCCCTCATATCACCTCACCCTTCTTGAAAGCCTGATTTGGTGGC  798
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTGGGCCCCTCATATCACCTCA-CCTTCTTGAAAGCCTGATTTGGTGGC  799

seq1  CATTACTGAGCCTGTGGAGTTA-TCTTCAGGGTCACTTCTTTCTCCATCT  847
      |||||||||||||||||||||| | |||||||||||||||||| ||||||
seq2  CATTACTGAGCCTGTGGAGTTATTTTTCAGGGTCACTTCTTTCCCCATCT  849

seq1  GGGATTAAATCTTGATGCTTTGCAGTATACCATTACCAAATGTACCTCTT  897
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGATT-AATCTTGATGCTTTGCAGTATACCA-TACCAAATGTACCTCTT  897

seq1  TCCACATGCTCTCGTTGTTTGTTATAGCCTTGGCTGCACAAGAAATACTG  947
      |||||||||||||| |||||| ||||||| |||  |||||| ||||||||
seq2  TCCACATGCTCTCG-TGTTTG-TATAGCC-TGGGAGCACAA-AAATACTG  943

seq1  ATGAATCCCCAA  959
         |||||||||
seq2  GATAATCCCCAA  955