BAC Information

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BAC

Clone NameB6Ng01-041D22
Chromosome3 (Build37)2 (Build37)
Map Location 125,156,320 - 125,156,39644,873,141 - 44,874,296
singlet/doubletsingletsinglet
Overlap geneNdst4
Upstream gene1700003H04Rik, LOC668817, LOC668820
Downstream geneUgt8a, Arsj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041D22.bB6Ng01-041D22.g
ACCDH867959DH867960
length1,0201,151
definitionDH867959|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D22, 5' end.DH867960|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(125,156,320 - 125,156,396)(44,873,141 - 44,874,296)
sequence
gaattccactccttggtctatacacaaaagaatgggaagcaggtattcaa
acaaaagctatatgtactagtatgttagtcagggttttgtaaaagaacag
aactgatataatgaatagaatatatatgcacatacatacatatggaggtt
atcaaagaggttcatgggctgtggtctgagtagctcagcaatggctgtct
cctgtcataaaggccaaggatccagttattgtacacagaatatctcagca
ctcccaatctggtgttgaagtactaaggaagtcctagagcgctgacagtt
gccagcctacattagaatcctggagaagtagcttttaataccagtaaaag
aaaggctcaagaacaagagagatgaacttgccagagagagcaagagagtg
caggcagaaggcaaaagctcccttctttcatggccttttatgtggactgc
acccataggtgtgtcccacatttagggtgataccgaatgacctggatgtc
ttgcacttcaaataatctaacccccacatttcactcagctgcttggattt
ttgttaattccagatgtaaccaagttgacaaccaagattagctatcacac
acacacacacacacacacattcaaattagtaagattcacaattaccaaaa
aatgggaattctccaagtgtgtctatctaaaaagtagataaacataagta
tatgctcatataatagagtactaataggtggttgggcttggtggctcatg
cctttaatccaagaacttcaaaggtagaagcaggtggatctctccaaggt
catgactagcttggtctacaaagcaaggaccttgacagccaggactacat
agagagagagataccatgtctcaaacaaaacaaacagaataacaacacac
aaaaaagagatgaagaagaggagaagaggagaggaagaaagaagagatga
aaaggaaggagaagagagagggaatactaatatgattttttaaaagaagg
aaagaaattaatttttaaac
gaattcaacagtgcaggctgcacaagaacttatttactttaagcgttact
gcaagctgtgaaaaacagaggtgcttatttgaagcaaacgaagggctttt
cttctggtggcagttctagtgacaaacaggggggagatgttatttttttc
aataagattgagtcaaaagtgacgaagtatttgaacttatgaagagacac
agtagctgctgtctctgggtgcttcatggcaagccagaatatctcatttt
gctttcatgttctttctgcttggtatagctatgatggagttagtataggc
tggtatccttttaagaaaacccccaattctgctgggcagtggtagtgtac
gcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttc
gaggccagcctggtctatagagtaagttctaggacagccagggctacaca
gagaaaccctgtctcgaaaaagaaaaaaagaaaagaaaatcccaattctg
catatcataacttggaatacttagattttacaaactaacatctcagatgt
attaaaaataaccattgactgttttacataaatttctaaagtctatttct
catacctccccatttctataaatagctttttgttttgagcatttatgcct
ccacaggcaatcatattcatttcctgatgaaaaaatagagagaaaacagt
agctcaatgttttaattaagatgaaaatatgtaatgttgaaggtggaaat
tcatgaatgattaagggccatttttgaaaatggtaatactctcaaataag
ggagaaaaatgggaattttctctgtgtactatattatagagtatgtggga
aggcagagcaggcagcctgccagtaaaaatatttcaaataaacaacataa
catgggactctcagaactgtagctgtacagtacaatactaatgagagcag
accatgatccgaggcgaggattgctgtactgtaatctttttactgaaaca
cgaggactggggagtcgaactcttttctcgaatgtatcctgatcattttt
ttgtttatccataatatactgcctggtgttggggggaaaaaagtggcttg
ataactgttaatccaaattggaatctatctgttattgtatcagctgaaag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125156320_125156396
seq2: B6Ng01-041D22.b_174_672 (reverse)

seq1  ATTTGTATGTGTGTGTGTGTGTGTGTGTGTG-----TATGTTTGTGTGT-  44
      ||||| |||||||||||||||||||||||||     ||   |||  ||| 
seq2  ATTTGAATGTGTGTGTGTGTGTGTGTGTGTGATAGCTAATCTTGGTTGTC  50

seq1  ------GTT---TCTG----------------AGGGGGGTG---GATATG  66
            |||   ||||                | |  | ||   || |||
seq2  AACTTGGTTACATCTGGAATTAACAAAAATCCAAGCAGCTGAGTGAAATG  100

seq1  TATG--------TATGTGC-------------------------------  77
      |  |        ||| ||                                
seq2  TGGGGGTTAGATTATTTGAAGTGCAAGACATCCAGGTCATTCGGTATCAC  150

seq1  --------------------------------------------------  77
                                                        
seq2  CCTAAATGTGGGACACACCTATGGGTGCAGTCCACATAAAAGGCCATGAA  200

seq1  --------------------------------------------------  77
                                                        
seq2  AGAAGGGAGCTTTTGCCTTCTGCCTGCACTCTCTTGCTCTCTCTGGCAAG  250

seq1  --------------------------------------------------  77
                                                        
seq2  TTCATCTCTCTTGTTCTTGAGCCTTTCTTTTACTGGTATTAAAAGCTACT  300

seq1  --------------------------------------------------  77
                                                        
seq2  TCTCCAGGATTCTAATGTAGGCTGGCAACTGTCAGCGCTCTAGGACTTCC  350

seq1  --------------------------------------------------  77
                                                        
seq2  TTAGTACTTCAACACCAGATTGGGAGTGCTGAGATATTCTGTGTACAATA  400

seq1  --------------------------------------------------  77
                                                        
seq2  ACTGGATCCTTGGCCTTTATGACAGGAGACAGCCATTGCTGAGCTACTCA  450

seq1  -------------------------------------------------  77
                                                       
seq2  GACCACAGCCCATGAACCTCTTTGATAACCTCCATATGTATGTATGTGC  499

seq1: chr2_44873141_44874296
seq2: B6Ng01-041D22.g_68_1218

seq1  GAATTCAACAGTGCAGGCTGCACAAGAACTTATTTACTTTAAGCGTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTGCAGGCTGCACAAGAACTTATTTACTTTAAGCGTTACT  50

seq1  GCAAGCTGTGAAAAACAGAGGTGCTTATTTGAAGCAAACGAAGGGCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTGTGAAAAACAGAGGTGCTTATTTGAAGCAAACGAAGGGCTTTT  100

seq1  CTTCTGGTGGCAGTTCTAGTGACAAACAGGGGGGAGATGTTATTTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGGCAGTTCTAGTGACAAACAGGGGGGAGATGTTATTTTTTTC  150

seq1  AATAAGATTGAGTCAAAAGTGACGAAGTATTTGAACTTATGAAGAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATTGAGTCAAAAGTGACGAAGTATTTGAACTTATGAAGAGACAC  200

seq1  AGTAGCTGCTGTCTCTGGGTGCTTCATGGCAAGCCAGAATATCTCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGCTGTCTCTGGGTGCTTCATGGCAAGCCAGAATATCTCATTTT  250

seq1  GCTTTCATGTTCTTTCTGCTTGGTATAGCTATGATGGAGTTAGTATAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATGTTCTTTCTGCTTGGTATAGCTATGATGGAGTTAGTATAGGC  300

seq1  TGGTATCCTTTTAAGAAAACCCCCAATTCTGCTGGGCAGTGGTAGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCCTTTTAAGAAAACCCCCAATTCTGCTGGGCAGTGGTAGTGTAC  350

seq1  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  400

seq1  GAGGCCAGCCTGGTCTATAGAGTAAGTTCTAGGACAGCCAGGGCTACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTATAGAGTAAGTTCTAGGACAGCCAGGGCTACACA  450

seq1  GAGAAACCCTGTCTCGAAAAAGAAAAAAAGAAAAGAAAATCCCAATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCGAAAAAGAAAAAAAGAAAAGAAAATCCCAATTCTG  500

seq1  CATATCATAACTTGGAATACTTAGATTTTACAAACTAACATCTCAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATAACTTGGAATACTTAGATTTTACAAACTAACATCTCAGATGT  550

seq1  ATTAAAAATAACCATTGACTGTTTTACATAAATTTCTAAAGTCTATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATAACCATTGACTGTTTTACATAAATTTCTAAAGTCTATTTCT  600

seq1  CATACCTCCCCATTTCTATAAATAGCTTTTTGTTTTGAGCATTTATGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCCCCATTTCTATAAATAGCTTTTTGTTTTGAGCATTTATGCCT  650

seq1  CCACAGGCAATCATATTCATTTCCTGATGAAAAAATAGAGAGAAAACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCAATCATATTCATTTCCTGATGAAAAAATAGAGAGAAAACAGT  700

seq1  AGCTCAATGTTTTAATTAAGATGAAAATATGTAATGTTGAAGGTGGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAATGTTTTAATTAAGATGAAAATATGTAATGTTGAAGGTGGAAAT  750

seq1  TCATGAATGATTAAGGGCCATTTTTGAAAATGGTAATACTCTCAAATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATGATTAAGGGCCATTTTTGAAAATGGTAATACTCTCAAATAAG  800

seq1  GGAGAAAAATGGGAATTTTCTCTGTGTACTATATTATAGAGTATGTGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAATGGGAATTTTCTCTGTGTACTATATTATAGAGTATGTGGGA  850

seq1  AGGCAGAGCAAGGCAGCCTGCCAGTTAAAAATATTTCAAATAAACAAACA  900
      ||||||||| |||||||||||||| |||||||||||||||||||| ||||
seq2  AGGCAGAGC-AGGCAGCCTGCCAG-TAAAAATATTTCAAATAAAC-AACA  897

seq1  TAACAT-GGACTCTCAGAAACTGTAGCTGTACAGTACAATACTAATGAGA  949
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  TAACATGGGACTCTCAG-AACTGTAGCTGTACAGTACAATACTAATGAGA  946

seq1  GCAGACCATGATCCGAGGCGAGGATTTCTGTACTGTAATCCTTTTACTTA  999
      |||||||||||||||||||||||||| ||||||||||||| ||||||| |
seq2  GCAGACCATGATCCGAGGCGAGGATTGCTGTACTGTAATCTTTTTACTGA  996

seq1  GAACACCAGGAACTGTGAGTCGAACTC-TTTCTCAGATGTATCCTGATCA  1048
       ||||| ||||   | ||||||||||| ||||||  ||||||||||||||
seq2  -AACACGAGGACTGGGGAGTCGAACTCTTTTCTCGAATGTATCCTGATCA  1045

seq1  TTTTTTTGTTTATCACATAATACACTG-CTGTGGTTGGTGGAAAAACAGT  1097
      |||||||||||||| ||||||| |||| |||  ||||| || |||| |||
seq2  TTTTTTTGTTTATC-CATAATATACTGCCTGGTGTTGGGGGGAAAAAAGT  1094

seq1  GGCTAGAAAAC-GTTATAGCAAAATTGAATCTATCTGTATATAGAATCAA  1146
      |||| || ||| ||||   |||| | |||||||||||| ||| | |||  
seq2  GGCTTGATAACTGTTAATCCAAATTGGAATCTATCTGT-TATTGTATC--  1141

seq1  AGCTGAAAGA  1156
      ||||||||||
seq2  AGCTGAAAGA  1151