BAC Information

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BAC

Clone NameB6Ng01-041L04
Chromosome2 (Build37)
Map Location 29,179,054 - 29,312,100
singlet/doubletdoublet
Overlap geneCrsp8
Upstream geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2
Downstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041L04.bB6Ng01-041L04.g
ACCDH868284DH868285
length1,1561,048
definitionDH868284|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L04, 5' end.DH868285|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,310,940 - 29,312,100)(29,179,054 - 29,180,101)
sequence
gaattccttcccaaggtatctgaaaattaaactgtagactctggaaatca
cagaagccaaagaagaaatcaaaaagaaaattagaaaataatcttgaact
aaatgataattaaatccattgaaatgtgtggcatgcaggtaatgccatgc
ttaggggaacatttctagctttccaatacttctacaagcactgactacct
aagctttcatttaagagtcatacaatggaaagcaggttaattccagagaa
gcaggagagtattacaatacacatgatcagagtattagcaaacctgtgac
atgcagaagagagcagtcatgacaatgacaacactagtaagatttactca
ggaaggaagcagagacttggaatttaccaggaacagggacaaattgggga
caatgttcagattccagagtcgtcaaaagtagaattaagaggatattgtt
aaatatttcatgtcaataaaattgacagctaagatgaaagggaccgcttc
aaaagatgtaagttatgtgacagacaggagaagtagtgatcttatgtcca
gagtggggtgccttttaaaaagctcactaaaggagccagcccacctaacc
agcagagctgctgaacagggaggacaaaaaagcagggttgtgagcagggg
ctcaggctgctagagggagtcactccagcagccctccacagacaaatctg
ctttctcatttgcccacaggctgttcctgcaacttccaagggcagtggct
taaaagtgaatttgctattttaaagagaaacaaaacaacccaccagcaac
acccccaaatccttccagagaaaaagcccaggccaggctgcaatcagtaa
cacccccccccccccagccatgctcggtttgcaaagactcctagactccc
aagcaggcaccgcccacagcagtttctgcaggacaaatccagtttggcct
atctgcccaggggactacaaagagtgtcaagcacatctgaatacaggcaa
gggttctgacacacttagtctgcactcccagaaagcacagcaaagttccc
tttacatggacaagcaggaggtggccacacagggcatgaagtgggtagaa
tgggacagctctgggactcagctcaaaggagggagagcatgctagaacgg
tcttgt
gaattcaggtgttcttggatcccgagagctgaagttataagccattgtga
cccacctgacatggttactgggaactgaactctggtcctctgcaagagca
gcaaggcattcttaaaactctgagccatcttcccagccttcgcctcccat
ctattctttattagattactgtgaagttgctcttgcatcagcagctgtgg
gtgtgtattagttactttgctcttgctgtggtgaaacaccatgaccaagg
caacttattgtctataagttccaaattaatgtatttttttcttgtaacaa
ggtctcacccaagctggccttgaacttaatatcctcttgcatctgccttc
caagaactcagattacagactcaaacgtgcaccggttgatacctccacag
ctgcctggagatcttctctatgcctgctgaatgacactggacccattagc
actgaagatcattgaataacctgagttcctcatctccttgaaccttactc
gagcgctagccagcattccactacgctagaaagcacaggttcccatcaaa
agggcttatttgcgcacatggttccaaaaatttagagtcggtgatgcaga
acggaagcctcaggctgcagacataagtgtctggactagaagctgaggac
acacacctcatacctcaagcaggaagcagaaggggagctcaaagtggcac
aagggattgaaaccccaatcccagccccagtgatatacttcctccagcaa
ggccacacctccagagcctcttcaaacagcaccatcaactggggaccaag
tgttcaaaagccagatcctgtgaggaatattccattctaaccactatagt
cactgaattatcgccttgagttggggtaagcccgggcctcaccaccctct
ttcctcaacctcaagtgctgaggtcacaggcatgtgccaccatgtccagc
aacagatgctgagatccctgttttagagatgcgaaccaaaaacacaagag
atttcagtctcagtccctagatggctaagaatcagtgagcaacagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29310940_29312100
seq2: B6Ng01-041L04.b_46_1201 (reverse)

seq1  ACAAGACTGTTCTTAAGCACTGCTCT-CCTCCTGTGGGCTGAGTCCCAGG  49
      ||||||| |||||  |||| |||||| |||||| || ||||||||||| |
seq2  ACAAGACCGTTCT--AGCA-TGCTCTCCCTCCTTTGAGCTGAGTCCCA-G  46

seq1  AGCTGTCTCATTCTACCCAACTTCATGCCCTGTGT-GCCACCTTCCTGCT  98
      ||||||| |||||||||| |||||||||||||||| |||||| |||||| 
seq2  AGCTGTCCCATTCTACCC-ACTTCATGCCCTGTGTGGCCACC-TCCTGC-  93

seq1  TTGTTCATGTAAAGGGACTTTTGCTGTGCTTTTCTGGGAGTGCAGAACTA  148
      |||| ||||||||||||  |||||||||| ||||||||||||||| ||||
seq2  TTGTCCATGTAAAGGGAACTTTGCTGTGC-TTTCTGGGAGTGCAG-ACTA  141

seq1  AGTGTGTCAGAACCCTTGCCTGTATTCAGATGTGCTTGACACTCTTTGTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCAGAACCCTTGCCTGTATTCAGATGTGCTTGACACTCTTTGTA  191

seq1  GT-CCCTGGGCAGATAGGCCAAACTGGATTTGTCCTGCAGAAACTGCTGT  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGGGCAGATAGGCCAAACTGGATTTGTCCTGCAGAAACTGCTGT  241

seq1  GGGCGGTGCCTGCTTGGGAGTCTAGGAGTCTTTGCAAACCGAGCATGGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGTGCCTGCTTGGGAGTCTAGGAGTCTTTGCAAACCGAGCATGGCT  291

seq1  GGGGGGGGGGGGGTGTTACTGATTGCAGCCTGGCCTGGGCTTTTTCTCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGGGTGTTACTGATTGCAGCCTGGCCTGGGCTTTTTCTCTG  341

seq1  GAAGGATTTGGGGGTGTTGCTGGTGGGTTGTTTTGTTTCTCTTT-AAATA  396
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGGATTTGGGGGTGTTGCTGGTGGGTTGTTTTGTTTCTCTTTAAAATA  391

seq1  GCAAATTCACTTTTAAGCCACTGCCCTTGGAAGTTGCAGGAACAGCCTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCACTTTTAAGCCACTGCCCTTGGAAGTTGCAGGAACAGCCTGT  441

seq1  GGGCAAATGAGAAAGCAGATTTGTCTGTGGAGGGCTGCTGGAGTGACTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAATGAGAAAGCAGATTTGTCTGTGGAGGGCTGCTGGAGTGACTCC  491

seq1  CTCTAGCAGCCTGAGCCCCTGCTCACAACCCTGCTTTTTTGTCCTCCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCAGCCTGAGCCCCTGCTCACAACCCTGCTTTTTTGTCCTCCCTG  541

seq1  TTCAGCAGCTCTGCTGGTTAGGTGGGCTGGCTCCTTTAGTGAGCTTTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGCTCTGCTGGTTAGGTGGGCTGGCTCCTTTAGTGAGCTTTTTA  591

seq1  AAAGGCACCCCACTCTGGACATAAGATCACTACTTCTCCTGTCTGTCACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACCCCACTCTGGACATAAGATCACTACTTCTCCTGTCTGTCACA  641

seq1  TAACTTACATCTTTTGAAGCGGTCCCTTTCATCTTAGCTGTCAATTTTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACATCTTTTGAAGCGGTCCCTTTCATCTTAGCTGTCAATTTTAT  691

seq1  TGACATGAAATATTTAACAATATCCTCTTAATTCTACTTTTGACGACTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGAAATATTTAACAATATCCTCTTAATTCTACTTTTGACGACTCT  741

seq1  GGAATCTGAACATTGTCCCCAATTTGTCCCTGTTCCTGGTAAATTCCAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGAACATTGTCCCCAATTTGTCCCTGTTCCTGGTAAATTCCAAG  791

seq1  TCTCTGCTTCCTTCCTGAGTAAATCTTACTAGTGTTGTCATTGTCATGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCCTTCCTGAGTAAATCTTACTAGTGTTGTCATTGTCATGAC  841

seq1  TGCTCTCTTCTGCATGTCACAGGTTTGCTAATACTCTGATCATGTGTATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTCTGCATGTCACAGGTTTGCTAATACTCTGATCATGTGTATT  891

seq1  GTAATACTCTCCTGCTTCTCTGGAATTAACCTGCTTTCCATTGTATGACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACTCTCCTGCTTCTCTGGAATTAACCTGCTTTCCATTGTATGACT  941

seq1  CTTAAATGAAAGCTTAGGTAGTCAGTGCTTGTAGAAGTATTGGAAAGCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGAAAGCTTAGGTAGTCAGTGCTTGTAGAAGTATTGGAAAGCTA  991

seq1  GAAATGTTCCCCTAAGCATGGCATTACCTGCATGCCACACATTTCAATGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTCCCCTAAGCATGGCATTACCTGCATGCCACACATTTCAATGG  1041

seq1  ATTTAATTATCATTTAGTTCAAGATTATTTTCTAATTTTCTTTTTGATTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTATCATTTAGTTCAAGATTATTTTCTAATTTTCTTTTTGATTT  1091

seq1  CTTCTTTGGCTTCTGTGATTTCCAGAGTCTACAGTTTAATTTTCAGATAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGGCTTCTGTGATTTCCAGAGTCTACAGTTTAATTTTCAGATAC  1141

seq1  CTTGGGAAGGAATTC  1161
      |||||||||||||||
seq2  CTTGGGAAGGAATTC  1156

seq1: chr2_29179054_29180101
seq2: B6Ng01-041L04.g_67_1107

seq1  GAATTCAGGTGTTCTTGGATCCCGAGAGCTGAAGTTATAAGCCATTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTTCTTGGATCCCGAGAGCTGAAGTTATAAGCCATTGTGA  50

seq1  CCCACCTGACATGGTTACTGGGAACTGAACTCTGGTCCTCTGCAAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGACATGGTTACTGGGAACTGAACTCTGGTCCTCTGCAAGAGCA  100

seq1  GCAAGGCATTCTTAAAACTCTGAGCCATCTTCCCAGCCTTCGCCTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCATTCTTAAAACTCTGAGCCATCTTCCCAGCCTTCGCCTCCCAT  150

seq1  CTATTCTTTATTAGATTACTGTGAAGTTGCTCTTGCATCAGCAGCTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTTTATTAGATTACTGTGAAGTTGCTCTTGCATCAGCAGCTGTGG  200

seq1  GTGTGTATTAGTTACTTTGCTCTTGCTGTGGTGAAACACCATGACCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTAGTTACTTTGCTCTTGCTGTGGTGAAACACCATGACCAAGG  250

seq1  CAACTTATTGTCTATAAGTTCCAAATTAATGTATTTTTTTCTTGTAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATTGTCTATAAGTTCCAAATTAATGTATTTTTTTCTTGTAACAA  300

seq1  GGTCTCACCCAAGCTGGCCTTGAACTTAATATCCTCTTGCATCTGCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACCCAAGCTGGCCTTGAACTTAATATCCTCTTGCATCTGCCTTC  350

seq1  CAAGAACTCAGATTACAGACTCAAACGTGCACCGGTTGATACCTCCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTCAGATTACAGACTCAAACGTGCACCGGTTGATACCTCCACAG  400

seq1  CTGCCTGGAGATCTTCTCTATGCCTGCTGAATGACACTGGACCCATTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGAGATCTTCTCTATGCCTGCTGAATGACACTGGACCCATTAGC  450

seq1  ACTGAAGATCATTGAATAACCTGAGTTCCTCATCTCCTTGAACCTTACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGATCATTGAATAACCTGAGTTCCTCATCTCCTTGAACCTTACTC  500

seq1  GAGCGCTAGCCAGCATTCCACTACGCTAGAAAGCACAGGTTCCCATCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCTAGCCAGCATTCCACTACGCTAGAAAGCACAGGTTCCCATCAAA  550

seq1  AGGGCTTATTTGCGCACATGGTTCCAAAAATTTAGAGTCGGTGATGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTATTTGCGCACATGGTTCCAAAAATTTAGAGTCGGTGATGCAGA  600

seq1  ACGGAAGCCTCAGGCTGCAGACATAAGTGTCTGGACTAGAAGCTGAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGCCTCAGGCTGCAGACATAAGTGTCTGGACTAGAAGCTGAGGAC  650

seq1  ACACACCTCATACCTCAAGCAGGAAGCAGAAGGGGAGCTCAAAGTGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTCATACCTCAAGCAGGAAGCAGAAGGGGAGCTCAAAGTGGCAC  700

seq1  AAGGGATTGAAACCCCAATCCCAGCCCCAGTGATATACTTCCTCCAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATTGAAACCCCAATCCCAGCCCCAGTGATATACTTCCTCCAGCAA  750

seq1  GGCCACACCTCCAGAGCCTCTTCAAACAGCACCATCAACTGGGGACCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACCTCCAGAGCCTCTTCAAACAGCACCATCAACTGGGGACCAAG  800

seq1  TGTTCAAAAGCCAGATCCTGTGAGGAATATTCCCATTCTAACCACTATAG  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTCAAAAGCCAGATCCTGTGAGGAATATT-CCATTCTAACCACTATAG  849

seq1  TCACTGAATTATCGCCTTGAGTTGGGGTAAGCCCGGGCCTCACCACCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAATTATCGCCTTGAGTTGGGGTAAGCCCGGGCCTCACCACCCTC  899

seq1  TTTCCTCAACCTCCAAGTGCTGAGGTCACAGGCATGTGCCACCATGTCCA  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAACCT-CAAGTGCTGAGGTCACAGGCATGTGCCACCATGTCCA  948

seq1  GCAACAGATGCTGAGAATCCCCTGTTTTTAGAGATGCGAACCAAAAACAC  1000
      ||||||||||||||||   ||||| |||||||||||||||||||||||||
seq2  GCAACAGATGCTGAGA--TCCCTG-TTTTAGAGATGCGAACCAAAAACAC  995

seq1  AAGGAGATTTCAGTTCTCAGTCTCTAGGATGGCT-AGAATCAGTGAGCA  1048
      || |||||||||| |||||||| ||| ||||||| ||||||||||||||
seq2  AA-GAGATTTCAG-TCTCAGTCCCTA-GATGGCTAAGAATCAGTGAGCA  1041