BAC Information

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BAC

Clone NameB6Ng01-042D13
Chromosome2 (Build37)
Map Location 72,035,181 - 72,177,479
singlet/doubletdoublet
Overlap geneRapgef4, B230120H23Rik
Upstream geneDync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, LOC100040270
Downstream geneCdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042D13.bB6Ng01-042D13.g
ACCDH868659DH868660
length1,1501,125
definitionDH868659|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D13, 5' end.DH868660|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,176,327 - 72,177,479)(72,035,181 - 72,036,318)
sequence
gaattctctgtgttaccttaaacatattctctaaaacatctttgtcagaa
tcatccaacaaaacattatccatataatgatcaatggcagcttgagggaa
ttgcttaagaattatttctaatggttgttgcacaaaattctgataagatg
tcccagtgttatccaaagacattaagcactcaggcaaacttgacaatgca
tgagataaaagcagtgataacccacggagatcgacgaaactgatgcattt
cttaccaaccatgtgcacacagcatccaagtcccaccagcaggatagaaa
agatggcttggagtgagagggaggttttgcttctcttcatcctcagcata
gaccttaaagggctacccacattgcacacctgagcagtggggaatagaaa
gcccagttcttcattcctttggaacagtaaaattcagagaaggctttgta
cccaagcctgttgtaccaaagccacttggcaccctgcctcttgcagcata
gcatttttaacagaaagttctcagaagtctttatgacccagaaggtaggg
aggactcgaaattgcttctgagtagagcagccaacatgtccactttaggg
taagtttggcaagcccactagataacgcacaatgttaacaagcgacagga
gttagcaagtgggcatcaaggggaaggacttaaatggaacagatgaaatg
atgagcgaaaatgttaaaattataacaaatataattgtcttttagttttc
agcattatttttgggaaaataatttattaaatgaaaaaacaaaaacaaaa
acaaaactattttctgtgtctaagagccaaaactgggccttgtatgtgca
agaatgtgctctgcaatgagttacatcccaagactcaaaagaaaaaaaaa
acttttaaaaagtcttaatttttgtaaggctacttataataccacttcaa
aagaattttgttatatttatttattatgtgtgtgttgggggctacatatg
ggaaaggtcagaggacactttcagatctgattcaccccctccattcttgt
tagcctgagaaagatctcagggttcttgtcttggtaggctggcttgacag
ctagtactttagatagagtccaagtcatcttcaacggccctggatgcttc

gaattcacattgtccttcagttctgtgatcatagctggaagcaagaagtt
tagacattaatagatgcacgcagcattgctgatgctggtgtttccctcta
gtggacaaaatctttgctgagcagttggggttaaggtcagaagatgagtc
agcatgtcaggggttatgaggggttctgtacgaaactgagagggacggct
agagataaatggaagtaaaccagggacacatggaacactttgttagtccc
cagcaatgaaacaaacttccaggagacctgttttggaaacttttgctctt
tgttagatacattgtggtagttaaaaataaacaagagatatgagttagag
atggaaactgagctttaaacattgtatctcaaaatgtctccccccccaca
cacacactcattaggaacactattgctaataccgatatctctgtcagcaa
gaaacccaattttttttttgccttttcaggatcatttttgtataattttt
attttttgtttctttagttctcctttatttaattcgttttcattattctg
ttaattctttttattcgaatcactagttgttttcactgaactatgaaata
tttaaatggatgaaaacagagattattaaaatagcttatttttatcaaaa
cgctcttgtttgcactacagtttaaacactttccaaacaatgagactgtc
ctccagctgtctcgagttcctccccttagcctgctcttccctcctcctca
acggtgattcctactctgaatatgttggttctgatcctaaccaattaaga
acgtatgcataggtatatatttatcaacaagctaccgcactgatttacat
gttttcaaacttcatattgctggtcagatcatttttaaaacctattttgc
attgcacaatgctttgtgaattatgggggaacgcactttccattaagacg
tgccttgctggtaaattgatacccagtagaacctgtctctcaggcaaagc
aaatactacagtctctcgtccttttttttccacagagagaaaataatttt
ctacctgaatagtagattgccggtactttttttaatttatgttgctaact
ctgggccctgaagcgatgattgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72176327_72177479
seq2: B6Ng01-042D13.b_43_1192 (reverse)

seq1  GAAGCATCCAGGGCTGTTG-AGATGACTGTGACGTCATCTAAAGGTACTA  49
      |||||||||||||| |||| ||||||||  |||   ||||||| ||||||
seq2  GAAGCATCCAGGGCCGTTGAAGATGACTTGGACTCTATCTAAA-GTACTA  49

seq1  GCTGCCAAGCCAGCCCTACCAAGAC-AGAACCCTGAGTTCTTTCTCCAGG  98
      |||| |||||||| ||||||||||| ||||||||||| ||||||||   |
seq2  GCTGTCAAGCCAG-CCTACCAAGACAAGAACCCTGAGATCTTTCTC--AG  96

seq1  GCTTAC-AGAATGGA-GGGGTGAATCAGATCCTGAAAGTTGTCCTCTGAC  146
      ||| || |||||||| |||||||||||||| ||||||| |||||||||||
seq2  GCTAACAAGAATGGAGGGGGTGAATCAGAT-CTGAAAG-TGTCCTCTGAC  144

seq1  C-TTCCCATATGTAGCCCCCAACACACACATAATAAATAAATATAACAAA  195
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTTCCCATATGTAGCCCCCAACACACACATAATAAATAAATATAAC-AA  193

seq1  AATTCTTTTGAAGTGGTATTTATAAGTAGCCTTACAAAAATTAAGACTTT  245
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATTCTTTTGAAGTGGTA-TTATAAGTAGCCTTACAAAAATTAAGACTTT  242

seq1  TTAAAAGTTTTTTTTTTCTTTTGAGTCTTGGGATGTAACTCATTGCAGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTTTTTTTTTCTTTTGAGTCTTGGGATGTAACTCATTGCAGAG  292

seq1  CACATTCTTGCACATACAAGGCCCAGTTTTGGCTCTTAGACACAGAAAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTGCACATACAAGGCCCAGTTTTGGCTCTTAGACACAGAAAAT  342

seq1  AGTTTTGTTTTTGTTTTTGTTTTTTCATTTAATAAATTATTTTCCCAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTTTGTTTTTGTTTTTTCATTTAATAAATTATTTTCCCAAAA  392

seq1  ATAATGCTGAAAACTAAAAGACAATTATATTTGTTATAATTTTAACATTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTGAAAACTAAAAGACAATTATATTTGTTATAATTTTAACATTT  442

seq1  TCGCTCATCATTTCATCTGTTCCATTTAAGTCCTTCCCCTTGATGCCCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCATCATTTCATCTGTTCCATTTAAGTCCTTCCCCTTGATGCCCAC  492

seq1  TTGCTAACTCCTGTCGCTTGTTAACATTGTGCGTTATCTAGTGGGCTTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACTCCTGTCGCTTGTTAACATTGTGCGTTATCTAGTGGGCTTGC  542

seq1  CAAACTTACCCTAAAGTGGACATGTTGGCTGCTCTACTCAGAAGCAATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTACCCTAAAGTGGACATGTTGGCTGCTCTACTCAGAAGCAATTT  592

seq1  CGAGTCCTCCCTACCTTCTGGGTCATAAAGACTTCTGAGAACTTTCTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCCTCCCTACCTTCTGGGTCATAAAGACTTCTGAGAACTTTCTGTT  642

seq1  AAAAATGCTATGCTGCAAGAGGCAGGGTGCCAAGTGGCTTTGGTACAACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTATGCTGCAAGAGGCAGGGTGCCAAGTGGCTTTGGTACAACA  692

seq1  GGCTTGGGTACAAAGCCTTCTCTGAATTTTACTGTTCCAAAGGAATGAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGTACAAAGCCTTCTCTGAATTTTACTGTTCCAAAGGAATGAAG  742

seq1  AACTGGGCTTTCTATTCCCCACTGCTCAGGTGTGCAATGTGGGTAGCCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGCTTTCTATTCCCCACTGCTCAGGTGTGCAATGTGGGTAGCCCT  792

seq1  TTAAGGTCTATGCTGAGGATGAAGAGAAGCAAAACCTCCCTCTCACTCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTCTATGCTGAGGATGAAGAGAAGCAAAACCTCCCTCTCACTCCA  842

seq1  AGCCATCTTTTCTATCCTGCTGGTGGGACTTGGATGCTGTGTGCACATGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTTTTCTATCCTGCTGGTGGGACTTGGATGCTGTGTGCACATGG  892

seq1  TTGGTAAGAAATGCATCAGTTTCGTCGATCTCCGTGGGTTATCACTGCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAGAAATGCATCAGTTTCGTCGATCTCCGTGGGTTATCACTGCTT  942

seq1  TTATCTCATGCATTGTCAAGTTTGCCTGAGTGCTTAATGTCTTTGGATAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCATGCATTGTCAAGTTTGCCTGAGTGCTTAATGTCTTTGGATAA  992

seq1  CACTGGGACATCTTATCAGAATTTTGTGCAACAACCATTAGAAATAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGACATCTTATCAGAATTTTGTGCAACAACCATTAGAAATAATTC  1042

seq1  TTAAGCAATTCCCTCAAGCTGCCATTGATCATTATATGGATAATGTTTTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAATTCCCTCAAGCTGCCATTGATCATTATATGGATAATGTTTTG  1092

seq1  TTGGATGATTCTGACAAAGATGTTTTAGAGAATATGTTTAAGGTAACACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGATTCTGACAAAGATGTTTTAGAGAATATGTTTAAGGTAACACA  1142

seq1  GAGAATTC  1153
      ||||||||
seq2  GAGAATTC  1150

seq1: chr2_72035181_72036318
seq2: B6Ng01-042D13.g_66_1190

seq1  GAATTCACATTGTCCTTCAGTTCTGTGATCATAGCTGGAAGCAAGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGTCCTTCAGTTCTGTGATCATAGCTGGAAGCAAGAAGTT  50

seq1  TAGACATTAATAGATGCACGCAGCATTGCTGATGCTGGTGTTTCCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTAATAGATGCACGCAGCATTGCTGATGCTGGTGTTTCCCTCTA  100

seq1  GTGGACAAAATCTTTGCTGAGCAGTTGGGGTTAAGGTCAGAAGATGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAAATCTTTGCTGAGCAGTTGGGGTTAAGGTCAGAAGATGAGTC  150

seq1  AGCATGTCAGGGGTTATGAGGGGTTCTGTACGAAACTGAGAGGGACGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCAGGGGTTATGAGGGGTTCTGTACGAAACTGAGAGGGACGGCT  200

seq1  AGAGATAAATGGAAGTAAACCAGGGACACATGGAACACTTTGTTAGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAATGGAAGTAAACCAGGGACACATGGAACACTTTGTTAGTCCC  250

seq1  CAGCAATGAAACAAACTTCCAGGAGACCTGTTTTGGAAACTTTTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGAAACAAACTTCCAGGAGACCTGTTTTGGAAACTTTTGCTCTT  300

seq1  TGTTAGATACATTGTGGTAGTTAAAAATAAACAAGAGATATGAGTTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATACATTGTGGTAGTTAAAAATAAACAAGAGATATGAGTTAGAG  350

seq1  ATGGAAACTGAGCTTTAAACATTGTATCTCAAAATGTCTCCCCCCCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACTGAGCTTTAAACATTGTATCTCAAAATGTCTCCCCCCCCACA  400

seq1  CACACACTCATTAGGAACACTATTGCTAATACCGATATCTCTGTCAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCATTAGGAACACTATTGCTAATACCGATATCTCTGTCAGCAA  450

seq1  GAAACCCAATTTTTTTTTTGCCTTTTCAGGATCATTTTTGTATAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAATTTTTTTTTTGCCTTTTCAGGATCATTTTTGTATAATTTTT  500

seq1  ATTTTTTGTTTCTTTAGTTCTCCTTTATTTAATTCGTTTTCATTATTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTTTCTTTAGTTCTCCTTTATTTAATTCGTTTTCATTATTCTG  550

seq1  TTAATTCTTTTTATTCGAATCACTAGTTGTTTTCACTGAACTATGAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTTTTTATTCGAATCACTAGTTGTTTTCACTGAACTATGAAATA  600

seq1  TTTAAATGGATGAAAACAGAGATTATTAAAATAGCTTATTTTTATCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGATGAAAACAGAGATTATTAAAATAGCTTATTTTTATCAAAA  650

seq1  CGCTCTTGTTTGCACTACAGTTTAAACACTTTCCAAACAATGAGACTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTGTTTGCACTACAGTTTAAACACTTTCCAAACAATGAGACTGTC  700

seq1  CTCCAGCTGTCTCGAGTTCCTCCCCTTAGCCTGCTCTTCCCTCCTCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTGTCTCGAGTTCCTCCCCTTAGCCTGCTCTTCCCTCCTCCTCA  750

seq1  ACGGTGATTCCTACTCTGAATATGTTGGTTCTGATCCTAACCAATTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGATTCCTACTCTGAATATGTTGGTTCTGATCCTAACCAATTAAGA  800

seq1  ACGTATGCATAGGTATATATTTATCAACAAGCTACCGCACTGATTTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATGCATAGGTATATATTTATCAACAAGCTACCGCACTGATTTACAT  850

seq1  GTTTTCAAACTTCATATTGCTGGTCAGATCATTTTTAAAACCTATTTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAACTTCATATTGCTGGTCAGATCATTTTTAAAACCTATTTTGC  900

seq1  ATTGCACAATGCTTTGTGAATTATGGGGGAACGCACTTTCCATTAAGACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACAATGCTTTGTGAATTATGGGGGAACGCACTTTCCATTAAGACG  950

seq1  TGCCTTGCTGGTAAATTGATACCCAGTAAGAACCTGTCTCTCAGGGCAAA  1000
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TGCCTTGCTGGTAAATTGATACCCAGT-AGAACCTGTCTCTCA-GGCAAA  998

seq1  GCAAATACTACAGTCTCTCGTCCTTTTATGTTCCACAGAGAGACAATAAT  1050
      ||||||||||||||||||||||||||| | ||||||||||||| ||||||
seq2  GCAAATACTACAGTCTCTCGTCCTTTT-TTTTCCACAGAGAGAAAATAAT  1047

seq1  GTTCTACCTGAATTAGTTAGGATTTGCCGGTAATTTTTTTTTATTTTATG  1100
       ||||||||||| ||| |||   |||||||||   |||||||| ||||||
seq2  TTTCTACCTGAA-TAG-TAG--ATTGCCGGTA--CTTTTTTTAATTTATG  1091

seq1  TATGCGTAACTCTGGAGCCTGAAAGCGATGATTTGATA  1138
      | ||| |||||||||  |||| ||||||||| ||||||
seq2  T-TGC-TAACTCTGGGCCCTG-AAGCGATGA-TTGATA  1125