BAC Information

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BAC

Clone NameB6Ng01-042L08
Chromosome4 (Build37)2 (Build37)
Map Location 50,044,909 - 50,045,23166,436,576 - 66,437,722
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663, LOC100040979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042L08.bB6Ng01-042L08.g
ACCDH868999DH869000
length1,1611,131
definitionDH868999|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L08, 5' end.DH869000|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,044,909 - 50,045,231)(66,436,576 - 66,437,722)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaatattggacatagtactactggaggatcgagcaatacctctcctgggc
atttatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggatggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcataccctagcaagattttattgaaa
ggacccagatgtagctatctcttgtgagactatgctggggcctagaaaac
acagaagtggatgctcacagtcagctaatgggatggatcacagggctctc
atggaggagctagagaaagtacccaagagctaaagggatctgcaacccta
tagtgaacaacattatgaactacagtacccggagctcttgactctagctg
catatgtaacaaaagatggcctaatcgcatcactggaagagaggccatgg
acagtaaactttgtatgcccagtacaggaacgcccagggctaaaaaagga
gttggggtggg
gaattctacatctacatcccaagacactgtgcaaggggtttggctgcctg
gatggtttcttggaaagaagtcaatttataagcccagacaacccagtctc
acggttcctcctgtttctgccttcttgctttgagactgcaagcacaaact
accatacctaacttttaacaatgtaattgctagaggatctaactcaggtt
cttgtgcttgcaaacactttacctattgagctccaatgcataagaattct
ttcctgaagcctttccttcagttagcacattctgacaataacagctgcgc
tctttaagaacggttggctgtctccccagtatttgtgtgctttgcatttt
ttaattaaaattaactttactgttataaatagtagaaaagaaagaactca
gtcatgtttttgttcattctgtaatatcacatctgtaagaatggagaaca
aatggaaatgaagacaaactgtttttaaataatatgaagggaacagaaca
gacttgtgggatttttttaacgtcaaacgatttattttaagaaaatacaa
tttatagttgactatacacaagttttcaccctgatacttgtatttaaaca
tcagcttcctaacacaaatggaagtgcatttacagaacagtgtttttact
ggaccttctgtgtcagtcttttattattattactatttcttatcttattt
ttattggttattgtatttatttatttttcaaatgttgttgcccctcttcc
cttcctggtctcttcctgcaaagtatccatcccacctcccctccccttta
cctctaagagggtgctcccccacctacctacctactcccacctcacctct
ctagcatccccctacactggggtatcaagcctccacagtaccaagctcct
cctctcccattgatgccaaatacgctatcctctgctacatagtagctgga
gccatgggtctctccatgtatactctttggttggtgttttactccctggg
atctcagaaatggcggggggggcggttccgttagttgatattattgttct
ctttgagtgcaatttccctcagcttctcagtacttccctagctcttcaat
gggttctggactagtcagtgattggctgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_50044909_50045231
seq2: B6Ng01-042L08.b_1092_1203 (reverse)

seq1  CCCACCCCAACTCCTTTTAACTGTATAGGATTTTCCATGTATTTATGTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCAATTACTATCCAAATAACTTATTATCCTTGACTGAAGATAGAATTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTCTTTTTTTTAAATTTTTTTTATTACACATTTTCCTCAATTACATTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCCACTTCCCTACC  200
                                                      ||
seq2  ------------------------------------------------CC  2

seq1  CACTCATTCCCATTTTTTTTTTTGGCCCT-GGCGTTCCCCTGTACTGGGG  249
      |||     ||||  |  |||||| ||||| ||||||  |||||||| |||
seq2  CAC-----CCCAACTCCTTTTTTAGCCCTGGGCGTT--CCTGTACT-GGG  44

seq1  CATATACAGTTTGAGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGAC  299
      |||| | ||||| | ||||||   |||||||| |||||||||||  ||| 
seq2  CATACAAAGTTT-ACTGTCCA--TGGCCTCTC-TTCCAGTGATG--CGAT  88

seq1  TAGGCCATCTTTTGATACATATGC  323
      |||||||||||||| |||||||||
seq2  TAGGCCATCTTTTGTTACATATGC  112

seq1: chr2_66436576_66437722
seq2: B6Ng01-042L08.g_66_1196

seq1  GAATTCTACATCTACATCCCAAGACACTGTGCAAGGGGTTTGGCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTACATCCCAAGACACTGTGCAAGGGGTTTGGCTGCCTG  50

seq1  GATGGTTTCTTGGAAAGAAGTCAATTTATAAGCCCAGACAACCCAGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTCTTGGAAAGAAGTCAATTTATAAGCCCAGACAACCCAGTCTC  100

seq1  ACGGTTCCTCCTGTTTCTGCCTTCTTGCTTTGAGACTGCAAGCACAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCCTCCTGTTTCTGCCTTCTTGCTTTGAGACTGCAAGCACAAACT  150

seq1  ACCATACCTAACTTTTAACAATGTAATTGCTAGAGGATCTAACTCAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACCTAACTTTTAACAATGTAATTGCTAGAGGATCTAACTCAGGTT  200

seq1  CTTGTGCTTGCAAACACTTTACCTATTGAGCTCCAATGCATAAGAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTTGCAAACACTTTACCTATTGAGCTCCAATGCATAAGAATTCT  250

seq1  TTCCTGAAGCCTTTCCTTCAGTTAGCACATTCTGACAATAACAGCTGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGCCTTTCCTTCAGTTAGCACATTCTGACAATAACAGCTGCGC  300

seq1  TCTTTAAGAACGGTTGGCTGTCTCCCCAGTATTTGTGTGCTTTGCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGAACGGTTGGCTGTCTCCCCAGTATTTGTGTGCTTTGCATTTT  350

seq1  TTAATTAAAATTAACTTTACTGTTATAAATAGTAGAAAAGAAAGAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAAATTAACTTTACTGTTATAAATAGTAGAAAAGAAAGAACTCA  400

seq1  GTCATGTTTTTGTTCATTCTGTAATATCACATCTGTAAGAATGGAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTTTTGTTCATTCTGTAATATCACATCTGTAAGAATGGAGAACA  450

seq1  AATGGAAATGAAGACAAACTGTTTTTAAATAATATGAAGGGAACAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATGAAGACAAACTGTTTTTAAATAATATGAAGGGAACAGAACA  500

seq1  GACTTGTGGGATTTTTTTAACGTCAAACGATTTATTTTAAGAAAATACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGGGATTTTTTTAACGTCAAACGATTTATTTTAAGAAAATACAA  550

seq1  TTTATAGTTGACTATACACAAGTTTTCACCCTGATACTTGTATTTAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTTGACTATACACAAGTTTTCACCCTGATACTTGTATTTAAACA  600

seq1  TCAGCTTCCTAACACAAATGGAAGTGCATTTACAGAACAGTGTTTTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCCTAACACAAATGGAAGTGCATTTACAGAACAGTGTTTTTACT  650

seq1  GGACCTTCTGTGTCAGTCTTTTATTATTATTACTATTTCTTATCTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTCTGTGTCAGTCTTTTATTATTATTACTATTTCTTATCTTATTT  700

seq1  TTATTGGTTATTGTATTTATTTATTTTTCAAATGTTGTTGCCCCTCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTTATTGTATTTATTTATTTTTCAAATGTTGTTGCCCCTCTTCC  750

seq1  CTTCCTGGTCTCTTCCTGCAAAGTATCCATCCCACCTCCCCTCCCCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGTCTCTTCCTGCAAAGTATCCATCCCACCTCCCCTCCCCTTTA  800

seq1  CCTCTAAGAGGGTGCTCCCCCACCTACCTACCTACTCCCACCTCACCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAGAGGGTGCTCCCCCACCTACCTACCTACTCCCACCTCACCTCT  850

seq1  CTAGCATCCCCCTACACTGGGGTATCAAGCCTCCACAGTACCAAGCTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATCCCCCTACACTGGGGTATCAAGCCTCCACAGTACCAAGCTCCT  900

seq1  CCTCTCCCATTGATGCCAAATAAGGCTATCCTCTGCTACATAGGTAGCTG  950
      ||||||||||||||||||||| | |||||||||||||||||| |||||||
seq2  CCTCTCCCATTGATGCCAAAT-ACGCTATCCTCTGCTACATA-GTAGCTG  948

seq1  GAGCCATGGGTCTCTCCATGTATACTCTTTGGTTGGTGTTTTACTCCCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATGGGTCTCTCCATGTATACTCTTTGGTTGGTGTTTTACTCCCTG  998

seq1  GGATCTCAGGAGATGGCGGGGGGGGGCGGTTCCGGTTAGTTGATATTATT  1050
      |||||||| || ||||| ||||||||||||||| ||||||||||||||||
seq2  GGATCTCA-GAAATGGC-GGGGGGGGCGGTTCC-GTTAGTTGATATTATT  1045

seq1  GTTCTTCCTATGAGGTTGCAATTCCCTTCAGCTCCTTCAGTTACTTCCCC  1100
      |||||  || ||||  ||||||| || |||||| | |||| ||||| |||
seq2  GTTCT--CTTTGAG--TGCAATTTCCCTCAGCTTC-TCAG-TACTT-CCC  1088

seq1  TAGCTCTTCCACTGGGGTCCTGGGCTCAGTCCAGTGGTTGGCTGTGA  1147
      ||||||||| |   |||| |||| || ||| ||||| ||||||||||
seq2  TAGCTCTTCAA--TGGGTTCTGGACT-AGT-CAGTGATTGGCTGTGA  1131