BAC Information

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BAC

Clone NameB6Ng01-042L23
Chromosome2 (Build37)
Map Location 9,281,054 - 9,398,989
singlet/doubletdoublet
Overlap geneLOC100040710
Upstream genenone
Downstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042L23.bB6Ng01-042L23.g
ACCDH869026DH869027
length1,1461,128
definitionDH869026|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L23, 5' end.DH869027|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,281,054 - 9,282,214)(9,397,866 - 9,398,989)
sequence
gaattctctaacttttaaggaaggatgaggaacaggggctcagaagcctc
tgtgtctatgaaagaattactctctgctttctttgtatctcagtctgatt
attacagtaacgatcaacttaacgtcggtacagattcataaacactacat
tgcgttactggagacccacaccgggctcagtttggcacggtctgtaagct
ctgtcatgtgcggccatttcaaccctgcctctctgcagctctactcttgt
tacttgccttaacgtcatttaatgtgctcattattcacctaaagtatatt
tttcatcatctgtgctgacacaagagtccctttaacctgtagggcagctg
gaaacttccactctccttgcttcttatccaagcattgcctgtccccaaag
gagaggtctgactttccatgataaaacaaagaggtagggggaagaaaggc
aagcccagaaagagaggaaagaaggaagggaagaaagaggaaagaaggga
agaaaggatcagaaagaatgaaagaagggaaggggaaagggaggagaaac
agagagaaaggaagcaagcagagaggtgaaacaggagggaggagagagaa
gagaaagaagaaagagaaagagaaagagaagaagagtgtgcacgtattgt
tctggggctctgtcttggcttgtcacaactatttcactcaactgcaataa
tagtgccataaagttctaacatcagttccctcaacaacaagcctgccacc
cacacaactctgccactcaaacgccttgctagcttttctcgttagcttat
tatgatgggcctcttagtcaagtctcagtttgactaacctatattgccac
aggcaactggttagtcaactttcatcttatttaacaaaagcaatgaagtg
gccctgaacgatcctcctgcccccagtctcagctctcacaggtcctgcca
gacatctggttaatcagctgtatctggcatcagggagcccctagaccaca
ggtcactgttttttcagtccttcatataaatgacggatatgcctggattg
taattcagcatcatccccccgattatagaaagaacaatcattggggtgtc
aaatgcacatctggaaagaaatgctccaggaacctggtaagaaact

gaattcaaggccattttgggggcataaaagcaaagttctgtctcgaaaat
ggaaaaataaaatacaaaaggaaatcttggaaattaggagtactttgtca
tgcatgatacacatcataaccatattatcactacccttcttattgttgtt
aataaatgaccagagggctcagaaagagcttactcatgctgcttttttat
agaacccagggccaccagcccagggctggcaccacccatcctcccaaatc
aatcaacaattaaaaaatgctctataggcttgcctacagccttaaggaga
cacttttttcaattgagattccctcctgtcacatgactttagcttgtata
agattgatataaaacgattcagcacagtagggtagctagctttcatagag
tgatgatataatgagaacagaaggaatataagagccaataatgagtggta
gagctataaaatgtcttctggacatagatgcctattatgttcatgaactc
acagcaactgcacaagacctacacaaaatgaagctagtcaaaatccaaac
atggatggaggagaagctcatgggtcctccacatctacttgtagagctat
tggcagttaatggctattgtggggaagggaattatttttcataggcagtt
catgcttctagtaaattatcactcaacaatgatcatggaaacaaccttac
ttaaagtgtgtaccattaaatgaaaaagatgctaaagtaagaagaaggac
ttgttgggaagatgggggaggtttgcagcaatggaggtcatcaggcacac
cattctggagaggagttaggccatccaactgacattgaggagctccctgt
gagaaccgacatgggggactggtcaaatgatgatcaatgaggagtatgca
acagagctgagagtatctttaaccaggacaaagtacataaagatttgcag
tgaatcacagagccagcttgttatgccctattgtatgttgccaaacacag
ctttgtggcgatcgataattttattcccaccaagaatactaactactagg
gagtagcttcaggctgtagctgaggagaaatttctgcaaccaagaggtgc
tatctgggaataaccaggcagattttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9281054_9282214
seq2: B6Ng01-042L23.b_45_1190

seq1  GAATTCTCTAACTTTTAAGGAAGGATGAGGAACAGGGGCTCAGAAGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAACTTTTAAGGAAGGATGAGGAACAGGGGCTCAGAAGCCTC  50

seq1  TGTGTCTATGAAAGAATTACTCTCTGCTTTCTTTGTATCTCAGTCTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTATGAAAGAATTACTCTCTGCTTTCTTTGTATCTCAGTCTGATT  100

seq1  ATTACAGTAACGATCAACTTAACGTCGGTACAGATTCATAAACACTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTAACGATCAACTTAACGTCGGTACAGATTCATAAACACTACAT  150

seq1  TGCGTTACTGGAGACCCACACCGGGCTCAGTTTGGCACGGTCTGTAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTACTGGAGACCCACACCGGGCTCAGTTTGGCACGGTCTGTAAGCT  200

seq1  CTGTCATGTGCGGCCATTTCAACCCTGCCTCTCTGCAGCTCTACTCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGTGCGGCCATTTCAACCCTGCCTCTCTGCAGCTCTACTCTTGT  250

seq1  TACTTGCCTTAACGTCATTTAATGTGCTCATTATTCACCTAAAGTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCTTAACGTCATTTAATGTGCTCATTATTCACCTAAAGTATATT  300

seq1  TTTCATCATCTGTGCTGACACAAGAGTCCCTTTAACCTGTAGGGCAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCATCTGTGCTGACACAAGAGTCCCTTTAACCTGTAGGGCAGCTG  350

seq1  GAAACTTCCACTCTCCTTGCTTCTTATCCAAGCATTGCCTGTCCCCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCCACTCTCCTTGCTTCTTATCCAAGCATTGCCTGTCCCCAAAG  400

seq1  GAGAGGTCTGACTTTCCATGATAAAACAAAGAGGTAGGGGGAAGAAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCTGACTTTCCATGATAAAACAAAGAGGTAGGGGGAAGAAAGGC  450

seq1  AAGCCCAGAAAGAGAGGAAAGAAGGAAGGGAAGAAAGAGGAAAGAAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGAAAGAGAGGAAAGAAGGAAGGGAAGAAAGAGGAAAGAAGGGA  500

seq1  AGAAAGGATCAGAAAGAATGAAAGAAGGGAAGGGGAAAGGGAGGAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATCAGAAAGAATGAAAGAAGGGAAGGGGAAAGGGAGGAGAAAC  550

seq1  AGAGAGAAAGGAAGCAAGCAGAGAGGTGAAACAGGAGGGAGGAGAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGGAAGCAAGCAGAGAGGTGAAACAGGAGGGAGGAGAGAGAA  600

seq1  GAGAAAGAAGAAAGAGAAAGAGAAAGAGAAGAAGAGTGTGCACGTATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAGAAAGAGAAAGAGAAAGAGAAGAAGAGTGTGCACGTATTGT  650

seq1  TCTGGGGCTCTGTCTTGGCTTGTCACAACTATTTCACTCAACTGCAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCTCTGTCTTGGCTTGTCACAACTATTTCACTCAACTGCAATAA  700

seq1  TAGTGCCATAAAGTTCTAACATCAGTTCCCTCAACAACAAGCCTGCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCATAAAGTTCTAACATCAGTTCCCTCAACAACAAGCCTGCCACC  750

seq1  CACACAACTCTGCCACTCAAACGCCTTGCTAGCTTTTCTCGTTAGCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACTCTGCCACTCAAACGCCTTGCTAGCTTTTCTCGTTAGCTTAT  800

seq1  TATGATGGGCCTCTTAGTCAAGTCTCAGTTTGACTAACCTATATTGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGGCCTCTTAGTCAAGTCTCAGTTTGACTAACCTATATTGCCAC  850

seq1  AGGCAACTGGTTAGTCAACTTTCATCTTATTTAACAAAAGCAATGAAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTGGTTAGTCAACTTTCATCTTATTTAACAAAAGCAATGAAGTG  900

seq1  GCCCTGAACGATCCTCCTGCCCCCAGTCTCAGCTCTCACAGGTCCTGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAACGATCCTCCTGCCCCCAGTCTCAGCTCTCACAGGTCCTGCCA  950

seq1  GACAATCTGGTTAATCAGCTGTATCTGGCATCAGGGGAGCCCCTAGGACC  1000
      ||| ||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  GAC-ATCTGGTTAATCAGCTGTATCTGGCATCA-GGGAGCCCCTA-GACC  997

seq1  ACAGGTCACTGTTTTTTCAGTCCTTCATTATTAAATGACGGGATATGCCC  1050
      ||||||||||||||||||||||||||||   |||||||| ||||||| ||
seq2  ACAGGTCACTGTTTTTTCAGTCCTTCAT--ATAAATGAC-GGATATG-CC  1043

seq1  TTGATTGTAATTCAGCATCCAATCCACACAGATATATAGAAAAGAACATA  1100
      | |||||||||||||||||  |||| | | ||| ||||| |||||||| |
seq2  TGGATTGTAATTCAGCATC--ATCC-CCCCGAT-TATAG-AAAGAACA-A  1087

seq1  TCATTTGGGTGTTCAAATGCACATCTGGAAAAGAGATGCTCTAGGAA-CT  1149
      ||||| ||||| |||||||||||||||| ||||| |||||| ||||| ||
seq2  TCATTGGGGTG-TCAAATGCACATCTGG-AAAGAAATGCTCCAGGAACCT  1135

seq1  TGTAAGAGAACT  1161
       |||||| ||||
seq2  GGTAAGA-AACT  1146


seq1: chr2_9397866_9398989
seq2: B6Ng01-042L23.g_67_1194 (reverse)

seq1  CCAAAATCTTGCCCTGGTTA-TCCCAGAT-GCACCTCTTTGGTTGCAG-A  47
      |||||||||   |||||||| |||||||| ||||||| |||||||||| |
seq2  CCAAAATCT--GCCTGGTTATTCCCAGATAGCACCTC-TTGGTTGCAGAA  47

seq1  ATATCTCCTCAGCTACAGCCTG-AGCTACT-CCTAGTAGTTAAGTA-TCT  94
      || ||||||||||||||||||| ||||||| |||||||||| |||| |||
seq2  ATTTCTCCTCAGCTACAGCCTGAAGCTACTCCCTAGTAGTT-AGTATTCT  96

seq1  TGGTGGGAAT-AAAGTATCGATCGCCACAAAGCTGTGTTTGGC-ACATAC  142
      |||||||||| ||| |||||||||||||||||||||||||||| ||||||
seq2  TGGTGGGAATAAAATTATCGATCGCCACAAAGCTGTGTTTGGCAACATAC  146

seq1  -ATAGGGCATAACAAGCTGGCTCTGTGATTCACTGCAAATCTTTAATGTA  191
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATAGGGCATAACAAGCTGGCTCTGTGATTCACTGCAAATCTTT-ATGTA  195

seq1  CTTTGTCCTGGTTAAAGATACTCTCAGCCTCTGTTGCATACTCCTCATTG  241
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTGTCCTGGTTAAAGATACTCTCAG-CTCTGTTGCATACTCCTCATTG  244

seq1  ATCATCATTTGACCAGTCCCCCATGTCGGTTCTCACAGGGAGCTCCTCAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTTGACCAGTCCCCCATGTCGGTTCTCACAGGGAGCTCCTCAA  294

seq1  TGTCAGTTGGATGGCCTAACTCCTCTCCAGAATGGTGTGCCTGATGACCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTGGATGGCCTAACTCCTCTCCAGAATGGTGTGCCTGATGACCT  344

seq1  CCATTGCTGCAAACCT-CCCCATCTTCCCAACAAGTCCTTCTTCTTACTT  390
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCATTGCTGCAAACCTCCCCCATCTTCCCAACAAGTCCTTCTTCTTACTT  394

seq1  TAGCATCTTTTTCATTTAATGGTACACACTTTAAGTAAGGTTGTTTCCAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTTTTTCATTTAATGGTACACACTTTAAGTAAGGTTGTTTCCAT  444

seq1  GATCATTGTTGAGTGATAATTTACTAGAAGCATGAACTGCCTATGAAAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTGTTGAGTGATAATTTACTAGAAGCATGAACTGCCTATGAAAAA  494

seq1  TAATTCCCTTCCCCACAATAGCCATTAACTGCCAATAGCTCTACAAGTAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCTTCCCCACAATAGCCATTAACTGCCAATAGCTCTACAAGTAG  544

seq1  ATGTGGAGGACCCATGAGCTTCTCCTCCATCCATGTTTGGATTTTGACTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGGACCCATGAGCTTCTCCTCCATCCATGTTTGGATTTTGACTA  594

seq1  GCTTCATTTTGTGTAGGTCTTGTGCAGTTGCTGTGAGTTCATGAACATAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTTTGTGTAGGTCTTGTGCAGTTGCTGTGAGTTCATGAACATAA  644

seq1  TAGGCATCTATGTCCAGAAGACATTTTATAGCTCTACCACTCATTATTGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCTATGTCCAGAAGACATTTTATAGCTCTACCACTCATTATTGG  694

seq1  CTCTTATATTCCTTCTGTTCTCATTATATCATCACTCTATGAAAGCTAGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATATTCCTTCTGTTCTCATTATATCATCACTCTATGAAAGCTAGC  744

seq1  TACCCTACTGTGCTGAATCGTTTTATATCAATCTTATACAAGCTAAAGTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTACTGTGCTGAATCGTTTTATATCAATCTTATACAAGCTAAAGTC  794

seq1  ATGTGACAGGAGGGAATCTCAATTGAAAAAAGTGTCTCCTTAAGGCTGTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACAGGAGGGAATCTCAATTGAAAAAAGTGTCTCCTTAAGGCTGTA  844

seq1  GGCAAGCCTATAGAGCATTTTTTAATTGTTGATTGATTTGGGAGGATGGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCCTATAGAGCATTTTTTAATTGTTGATTGATTTGGGAGGATGGG  894

seq1  TGGTGCCAGCCCTGGGCTGGTGGCCCTGGGTTCTATAAAAAAGCAGCATG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCAGCCCTGGGCTGGTGGCCCTGGGTTCTATAAAAAAGCAGCATG  944

seq1  AGTAAGCTCTTTCTGAGCCCTCTGGTCATTTATTAACAACAATAAGAAGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCTCTTTCTGAGCCCTCTGGTCATTTATTAACAACAATAAGAAGG  994

seq1  GTAGTGATAATATGGTTATGATGTGTATCATGCATGACAAAGTACTCCTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATAATATGGTTATGATGTGTATCATGCATGACAAAGTACTCCTA  1044

seq1  ATTTCCAAGATTTCCTTTTGTATTTTATTTTTCCATTTTCGAGACAGAAC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAGATTTCCTTTTGTATTTTATTTTTCCATTTTCGAGACAGAAC  1094

seq1  TTTGCTTTTATGCCCCCAAAATGGCCTTGAATTC  1124
      ||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTATGCCCCCAAAATGGCCTTGAATTC  1128


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