BAC Information

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BAC

Clone NameB6Ng01-043A02
Chromosome2 (Build37)
Map Location 50,768,514 - 50,932,498
singlet/doubletdoublet
Overlap genenone
Upstream gene2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781, LOC227885
Downstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043A02.bB6Ng01-043A02.g
ACCDH869200DH869201
length8081,178
definitionDH869200|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A02, 5' end.DH869201|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,931,695 - 50,932,498)(50,768,514 - 50,769,708)
sequence
gaattcaccattgactaacctatatgggatggcaccatcaacttcaaggt
gggtctgtgcttttcagttaatcttatctggaaatgccctcaaaggcaca
tccaatgtgtctcctaggtgatttctaaatgcagccaagttggcaatgaa
gattaagcattaccaacagggtgataggggagcagttgttggcctgtgtt
taataagtagtcatgatgttattaatgcaagtattataggcagagctgtc
acactgacaaatcacgcattttacaaatgaattggcaattttggagttgt
gaagagaatattcttgcatggcatatatgacagtctgtagtagaaaaaga
cttgtcaacaaggtgtatagtgatatggacaataataaaataaatgcaaa
gtactagactgacacaagaatggtttaggaaaaaaaaatggctttccagg
tgaaactaaagtcaggaaatgcaggagaaagtcagcgcgttctgactagt
gaacccaccctcgcccccaggagtggcccatgcttacacagcagatgcct
ccgggacagagcagccaatcagttggcgccagctaggcaggacccatgga
gatgtcgatggagggtataaaggcactctctactataacaataaatgagc
ctgcttctgcttcttgtcaggattccggaatctgttttctgttatttggt
tttttggttttttggtttttttttttttgttttttgttttttttcaagac
agggtttctctgtgtagccctggctgtcctgtaactctcccccgtagccc
aggttggg
gaattctacctggaagaggcgaacaagccattaaatgagtctggatttaa
ataataagatcggtatcagaaatacagagctgaaggcattggcaagagcc
cactttcaaaaccatgattgaatcacttagagactgtatggtcatacgaa
aaggatgtctgggggaaagcctggagggcaccaatgtctagacccgagga
agaccctgaatcaggagaaaaacaaggcattcttgaaaagcaggagactg
agacaaaaagcatcttgaaccaaggcttgccttggctatattttgagact
ctttacaacaaacaaaaatcggtggcaagctaaactgcatctgtccgtga
acagaaacataagcttgattagaagatgactgagtgatgaaagagaaact
ggcaaatgtattcaaaatgcctaccccggagtcctgtggcccaaggaaca
aggtgcaagggagatatagctacaaaagaatttggagtccaggccatttt
atttttatttgcttgtttcagatgccagcccttaaacgggaagaggtgga
agagatctctccaaataaaagaatgtaatggaaacaagcgggaaagatgt
ccttttgtctacacaaagcctcagggaaagggaagcagagcttggggaga
gaaacatgaccagtataaagagaaacttttcacaggtggattgatggagg
caccgatgctgacagcttggtgaccgctcaacaacaaaggacgatgcaac
actgtatcaaacccacagtcacagtgtatcaaatccaccgcaacccttct
ttaagcagaagcggtgagctgttgatggctaggggtgtgggtaaaaagtc
cgggtagagaaggaagagtgaacatgagggtcgtgctagtagaatggttc
tttgtgaggctgttggagctgacattcactctggacctgagtgttagcag
tgaccttcatcatgggagcttgtagcagctttggagtcttagacggcaag
gaaataatccattttgctgctattcatatcagtaaattagttttccttat
agtctatcactggtggaggtaactagtggaacaaaacacgtttaacagag
aaaatccaattgttcggctttaaatacatggtgaaatcacccaaccgatg
ctgattttaacggaatccttgtgtctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50931695_50932498
seq2: B6Ng01-043A02.b_45_851 (reverse)

seq1  CCAACCTGGGCTAC-GGGGTGAGTTCCAGGACAGCCAGGGCTACACAGAG  49
      |||||||||||||| |||| ||||| ||||||||||||||||||||||||
seq2  CCAACCTGGGCTACGGGGGAGAGTTACAGGACAGCCAGGGCTACACAGAG  50

seq1  AAACCCTGTCTTG-AAAAAAACAAAAAAC-AAAAAAAAAAAACCAAAAAA  97
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  AAACCCTGTCTTGAAAAAAAACAAAAAACAAAAAAAAAAAAACCAAAAAA  100

seq1  CCAAAAAACCAAATAACAGAAAACAGATTCCGGAATCCTGACAAGAAGCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAACCAAATAACAGAAAACAGATTCCGGAATCCTGACAAGAAGCA  150

seq1  GAAGCAGGCTCATTTATTGTTATAGTAGAGAGTGCCTTTATACCCTCCAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGCTCATTTATTGTTATAGTAGAGAGTGCCTTTATACCCTCCAT  200

seq1  CGACATCTCCATGGGTCCTGCCTAGCTGGCGCCAACTGATTGGCTGCTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATCTCCATGGGTCCTGCCTAGCTGGCGCCAACTGATTGGCTGCTCT  250

seq1  GTCCCGGAGGCATCTGCTGTGTAAGCATGGGCCACTCCTGGGGGCGAGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGGAGGCATCTGCTGTGTAAGCATGGGCCACTCCTGGGGGCGAGGG  300

seq1  TGGGTTCACTAGTCAGAACGCGCTGACTTTCTCCTGCATTTCCTGACTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCACTAGTCAGAACGCGCTGACTTTCTCCTGCATTTCCTGACTTT  350

seq1  AGTTTCACCTGGAAAGCCATTTTTTTTTCCTAAACCATTCTTGTGTCAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACCTGGAAAGCCATTTTTTTTTCCTAAACCATTCTTGTGTCAGT  400

seq1  CTAGTACTTTGCATTTATTTTATTATTGTCCATATCACTATACACCTTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACTTTGCATTTATTTTATTATTGTCCATATCACTATACACCTTGT  450

seq1  TGACAAGTCTTTTTCTACTACAGACTGTCATATATGCCATGCAAGAATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTCTTTTTCTACTACAGACTGTCATATATGCCATGCAAGAATAT  500

seq1  TCTCTTCACAACTCCAAAATTGCCAATTCATTTGTAAAATGCGTGATTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCACAACTCCAAAATTGCCAATTCATTTGTAAAATGCGTGATTTG  550

seq1  TCAGTGTGACAGCTCTGCCTATAATACTTGCATTAATAACATCATGACTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGACAGCTCTGCCTATAATACTTGCATTAATAACATCATGACTA  600

seq1  CTTATTAAACACAGGCCAACAACTGCTCCCCTATCACCCTGTTGGTAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAACACAGGCCAACAACTGCTCCCCTATCACCCTGTTGGTAATG  650

seq1  CTTAATCTTCATTGCCAACTTGGCTGCATTTAGAAATCACCTAGGAGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTTCATTGCCAACTTGGCTGCATTTAGAAATCACCTAGGAGACA  700

seq1  CATTGGATGTGCCTTTGAGGGCATTTCCAGATAAGATTAACTGAAAAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGATGTGCCTTTGAGGGCATTTCCAGATAAGATTAACTGAAAAGCA  750

seq1  CAGACCCACCTTGAAGTTGATGGTGCCATCCCATATAGGTTAGTCAATGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCACCTTGAAGTTGATGGTGCCATCCCATATAGGTTAGTCAATGG  800

seq1  TGAATTC  804
      |||||||
seq2  TGAATTC  807

seq1: chr2_50768514_50769708
seq2: B6Ng01-043A02.g_65_1242

seq1  GAATTCTACCTGGAAGAGGCGAACAAGCCATTAAATGAGTCTGGATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTGGAAGAGGCGAACAAGCCATTAAATGAGTCTGGATTTAA  50

seq1  ATAATAAGATCGGTATCAGAAATACAGAGCTGAAGGCATTGGCAAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGATCGGTATCAGAAATACAGAGCTGAAGGCATTGGCAAGAGCC  100

seq1  CACTTTCAAAACCATGATTGAATCACTTAGAGACTGTATGGTCATACGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAAAACCATGATTGAATCACTTAGAGACTGTATGGTCATACGAA  150

seq1  AAGGATGTCTGGGGGAAAGCCTGGAGGGCACCAATGTCTAGACCCGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTCTGGGGGAAAGCCTGGAGGGCACCAATGTCTAGACCCGAGGA  200

seq1  AGACCCTGAATCAGGAGAAAAACAAGGCATTCTTGAAAAGCAGGAGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGAATCAGGAGAAAAACAAGGCATTCTTGAAAAGCAGGAGACTG  250

seq1  AGACAAAAAGCATCTTGAACCAAGGCTTGCCTTGGCTATATTTTGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAGCATCTTGAACCAAGGCTTGCCTTGGCTATATTTTGAGACT  300

seq1  CTTTACAACAAACAAAAATCGGTGGCAAGCTAAACTGCATCTGTCCGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAACAAACAAAAATCGGTGGCAAGCTAAACTGCATCTGTCCGTGA  350

seq1  ACAGAAACATAAGCTTGATTAGAAGATGACTGAGTGATGAAAGAGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACATAAGCTTGATTAGAAGATGACTGAGTGATGAAAGAGAAACT  400

seq1  GGCAAATGTATTCAAAATGCCTACCCCGGAGTCCTGTGGCCCAAGGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGTATTCAAAATGCCTACCCCGGAGTCCTGTGGCCCAAGGAACA  450

seq1  AGGTGCAAGGGAGATATAGCTACAAAAGAATTTGGAGTCCAGGCCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAAGGGAGATATAGCTACAAAAGAATTTGGAGTCCAGGCCATTTT  500

seq1  ATTTTTATTTGCTTGTTTCAGATGCCAGCCCTTAAACGGGAAGAGGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTGCTTGTTTCAGATGCCAGCCCTTAAACGGGAAGAGGTGGA  550

seq1  AGAGATCTCTCCAAATAAAAGAATGTAATGGAAACAAGCGGGAAAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTCTCCAAATAAAAGAATGTAATGGAAACAAGCGGGAAAGATGT  600

seq1  CCTTTTGTCTACACAAAGCCTCAGGGAAAGGGAAGCAGAGCTTGGGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCTACACAAAGCCTCAGGGAAAGGGAAGCAGAGCTTGGGGAGA  650

seq1  GAAACATGACCAGTATAAAGAGAAACTTTTCACAGGTGGATTGATGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGACCAGTATAAAGAGAAACTTTTCACAGGTGGATTGATGGAGG  700

seq1  CACCGATGCTGACAGCTTGGTGACCGCTCAACAACAAAGGACGATGCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGATGCTGACAGCTTGGTGACCGCTCAACAACAAAGGACGATGCAAC  750

seq1  ACTGTATCAAACCCACAGTCACAGTGTATCAAATCCACCGCAACCCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCAAACCCACAGTCACAGTGTATCAAATCCACCGCAACCCTTCT  800

seq1  TTAAGCAGAAGCGGTGAGCTGTTGATGGCTAGGGGTGTGGGTAAAAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGAAGCGGTGAGCTGTTGATGGCTAGGGGTGTGGGTAAAAAGTC  850

seq1  CGGGTAGAGAAGGAAGAGTGAACATGAGGGTCGTGCTAGTAGAATGGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAGAGAAGGAAGAGTGAACATGAGGGTCGTGCTAGTAGAATGGTTC  900

seq1  TTTGTGAGGCTGTTGGAGCTGACATTCAACTCTGGACCTGAGTGTTAGCA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGTGAGGCTGTTGGAGCTGACATTC-ACTCTGGACCTGAGTGTTAGCA  949

seq1  GTGACCTTCATCATGGGAGCTTGTAGCAGCTTTGGAGTTCTTAGAAGGGC  1000
      ||||||||||||||||||||||||||||||||||||| ||||||| ||  
seq2  GTGACCTTCATCATGGGAGCTTGTAGCAGCTTTGGAG-TCTTAGACGG--  996

seq1  AAAGGAAATAATCCATTTTGCTGCTATCCATATCAGTAAAATTTAAGTTT  1050
       |||||||||||||||||||||||||| ||||||||||||   | |||||
seq2  CAAGGAAATAATCCATTTTGCTGCTATTCATATCAGTAAA---TTAGTTT  1043

seq1  TCCTATTAAGTCTATCACT-GTGGAGTAAACTAGTGGAACAAAAACAGTT  1099
      |||| |  ||||||||||| ||||||  |||||||||||| ||||||  |
seq2  TCCT-TATAGTCTATCACTGGTGGAGGTAACTAGTGGAAC-AAAACACGT  1091

seq1  TTAAAACAGAAAATCCAGAATTGTTCTGCTTTAAATACATGTGAAAATCA  1149
      |||| | |||||||||  |||||||| ||||||||||||||   ||||||
seq2  TTAACAGAGAAAATCC--AATTGTTCGGCTTTAAATACATGGTGAAATCA  1139

seq1  CACCAAACGATGCTGATTTTTAACAGGAATCCTCTTTGTTGTCTGA  1195
      | |||| ||||||||| ||||||| |||||||   ||| |||||||
seq2  C-CCAACCGATGCTGA-TTTTAAC-GGAATCC---TTG-TGTCTGA  1178