BAC Information

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BAC

Clone NameB6Ng01-043J17
Chromosome2 (Build37)
Map Location 164,480,560 - 164,635,585
singlet/doubletdoublet
Overlap geneWfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3
Upstream genePkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088
Downstream geneZswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043J17.bB6Ng01-043J17.g
ACCDH869617DH869618
length1,0761,113
definitionDH869617|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J17, 5' end.DH869618|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,634,505 - 164,635,585)(164,480,560 - 164,481,673)
sequence
gaattcctaacttcctgtatgtgtacctgccattgctatccatataatct
ctgtattattagtttcacataaaattttaaaattattttgcatgtatggg
tgcaccgctggcatgcctggtgcctatggaggtcagaagagggcaccaga
tgccctggaactagagttacagactgggcattgaacccaagtctacttga
agaacagcaagtgctcttagcttctgtgacatgctccaaccctcagagga
tgccctttaaatcaacctgccatgtttactctgtttagtaaggaagctca
tgtgaatatagtggagaagttcttattaaaatcacctcttcattagtata
tgtggtggcttgaataggaagggctcccatagactcatgtgtttaaatgc
ttggctatagggaatggtattaggaggtgtggccttgctggagtaggtgt
ggtcttgctggagaaagtgtgtcaccgcagaggtgggctttaaggtctca
catgctcaaagctaggctttctgtggcagttctcagcctgttgcctgagg
ctcaaaatgtagaattctctgctccttctccatcaccatgtctgcctgaa
tgttaccatgtttcctaccatgacaataatgagctaaacctttaaattgt
aagtcagcctcaattaaatgctctcctttctgtcactagtgctttggctt
gctacttctctcttctctgtcattgttacttcagttctctcacctggcct
ccctttggcatcttcccaagtatcacaatttcaggtaaccaggcttttca
gagtggagcggattgggaggtagggacagggaggacatgtatacatgtga
agtgcatgtcaggtcaacactgggtatcttcctctgtgactccccatctt
agccgcctagctggtttgtagcagcttatatgtaaaccaggctgtctgaa
acagggatctgcctgcctcttgctctgtggtgctgagattaaaggcgtgc
atcagatgtctgctttctggcatgtttctgagacaggctctcactcactg
aagtttctaaattctgctaggttagc
gaattcagaggcagtgggtggagaaggttgagaacggataggatcaatac
acattatacacaggtatgaggttgtcagaggataaagaaaagatatttta
aaaagccaggaacaaaatttcagagtctttacggtgctgcggatggatct
ggatgtgcagactgtaaccatctcctgggcactcctcaatccctgctcat
cccttccttgcctgctgcccacagccccaccttgctcagccttgagcatc
ttgcagaacatcgtgaattaggacatacatgatggtgtgtgtgtgacata
agtgaaatcactgacggaaaggcatcttgggagacggttacaggattaaa
taaaaagggcagaagatgggtctgagccaaaacgagactctgtgtggcgt
gcccggggaaactgagataatagcgaaccaggatcgaggctggaaaggcg
gctcggtggtaatgagcacctgctattctcgcagaggacgggggttcagt
tcccaactgtggataatgctagttccaggggatctgatgtcctggtgtca
cgtgtggcgagcacgcgcgcgcgcgcacacacacacacacacagacacac
acagagtaaatctttttaaaaatgagtctattttatggacactagaggta
aacatcagaattcctcaccaaccctaagactcacagcttcagctccagac
agcccggcaggaccctgagagccttctgtttctaccaacaatcccggctc
tggctcacagacatttgcctccaggtcagctttatctgcaaacactttac
tcaatctcctgagccctaaactatatatatcgtgaggaaattatgttagc
gcgaagagggggctgaaagagatctcgtttatgagaaaagccacagagaa
aaagggcaaggggcaagaaaaggggaagaaacaggacggctactgctctg
ccctgatttggccagcagaggcagtagagaggccccgtcctgctgtggga
aagtctgccatccagactagttctgagctcaccgcctgggttcgcagtta
tgtcgtcaggaatttgctgctcttccttggtgtgctgtgctgctttccta
gccgacgggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164634505_164635585
seq2: B6Ng01-043J17.b_51_1126 (reverse)

seq1  GCTAACCTAGCTGGATCTGTGAGCTTCAGTTGAGTGAGAAGCCCTGTCTC  50
      ||||||||||| | || |   | |||||| |||||||||   ||||||||
seq2  GCTAACCTAGCAGAATTTAGAAACTTCAG-TGAGTGAGA--GCCTGTCTC  47

seq1  AGAAAACATGGCAGAAAGGCAGGACATACTGATGCACGCCTTTAATCTCA  100
      || ||||||| |||||| ||| ||||| ||||||||||||||||||||||
seq2  AG-AAACATGCCAGAAA-GCA-GACAT-CTGATGCACGCCTTTAATCTCA  93

seq1  GCACCACAGAGGCAGAGGCAGGCAGATCCCTGTTTCAGACAGCCTGGTTT  150
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GCACCACAGAGCAAGAGGCAGGCAGATCCCTGTTTCAGACAGCCTGGTTT  143

seq1  ACATATTAAGCTGCTACAAACCAGCTAGGCGGCTAAGATGGGGAGTCACA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATA-TAAGCTGCTACAAACCAGCTAGGCGGCTAAGATGGGGAGTCACA  192

seq1  GAGGAAGATACCCAGTGTTGACCTGACATGCACTTCACATGTATACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGATACCCAGTGTTGACCTGACATGCACTTCACATGTATACATGT  242

seq1  CCT-CCTGTCCCTACCTCCCAATCCGCTCCACTCTG-AAAGCCTGGTTAC  298
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTCCCTGTCCCTACCTCCCAATCCGCTCCACTCTGAAAAGCCTGGTTAC  292

seq1  CTG-AATTGTGATACTTGGGAAGATGCCAAAGGGAGGCCAGGTGAGAGAA  347
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTGTGATACTTGGGAAGATGCCAAAGGGAGGCCAGGTGAGAGAA  342

seq1  CTGAAGTAACAATGACAGAGAAGAGAGAAGTAGCAAGCCAAAGCACTAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTAACAATGACAGAGAAGAGAGAAGTAGCAAGCCAAAGCACTAGT  392

seq1  GACAGAAAGGAGAGCATTTAATTGAGGCTGACTTACAATTTAAAGGTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAGGAGAGCATTTAATTGAGGCTGACTTACAATTTAAAGGTTTA  442

seq1  GCTCATTATTGTCATGGTAGGAAACATGGTAACATTCAGGCAGACATGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTATTGTCATGGTAGGAAACATGGTAACATTCAGGCAGACATGGT  492

seq1  GATGGAGAAGGAGCAGAGAATTCTACATTTTGAGCCTCAGGCAACAGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGAAGGAGCAGAGAATTCTACATTTTGAGCCTCAGGCAACAGGCT  542

seq1  GAGAACTGCCACAGAAAGCCTAGCTTTGAGCATGTGAGACCTTAAAGCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGCCACAGAAAGCCTAGCTTTGAGCATGTGAGACCTTAAAGCCC  592

seq1  ACCTCTGCGGTGACACACTTTCTCCAGCAAGACCACACCTACTCCAGCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCGGTGACACACTTTCTCCAGCAAGACCACACCTACTCCAGCAA  642

seq1  GGCCACACCTCCTAATACCATTCCCTATAGCCAAGCATTTAAACACATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACCTCCTAATACCATTCCCTATAGCCAAGCATTTAAACACATGA  692

seq1  GTCTATGGGAGCCCTTCCTATTCAAGCCACCACATATACTAATGAAGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGGGAGCCCTTCCTATTCAAGCCACCACATATACTAATGAAGAGG  742

seq1  TGATTTTAATAAGAACTTCTCCACTATATTCACATGAGCTTCCTTACTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAATAAGAACTTCTCCACTATATTCACATGAGCTTCCTTACTAA  792

seq1  ACAGAGTAAACATGGCAGGTTGATTTAAAGGGCATCCTCTGAGGGTTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAAACATGGCAGGTTGATTTAAAGGGCATCCTCTGAGGGTTGGA  842

seq1  GCATGTCACAGAAGCTAAGAGCACTTGCTGTTCTTCAAGTAGACTTGGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCACAGAAGCTAAGAGCACTTGCTGTTCTTCAAGTAGACTTGGGT  892

seq1  TCAATGCCCAGTCTGTAACTCTAGTTCCAGGGCATCTGGTGCCCTCTTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCCCAGTCTGTAACTCTAGTTCCAGGGCATCTGGTGCCCTCTTCT  942

seq1  GACCTCCATAGGCACCAGGCATGCCAGCGGTGCACCCATACATGCAAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCATAGGCACCAGGCATGCCAGCGGTGCACCCATACATGCAAAAT  992

seq1  AATTTTAAAATTTTATGTGAAACTAATAATACAGAGATTATATGGATAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAATTTTATGTGAAACTAATAATACAGAGATTATATGGATAGC  1042

seq1  AATGGCAGGTACACATACAGGAAGTTAGGAATTC  1081
      ||||||||||||||||||||||||||||||||||
seq2  AATGGCAGGTACACATACAGGAAGTTAGGAATTC  1076

seq1: chr2_164480560_164481673
seq2: B6Ng01-043J17.g_68_1180

seq1  GAATTCAGAGGCAGTGGGTGGAGAAGGTTGAGAACGGATAGGATCAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCAGTGGGTGGAGAAGGTTGAGAACGGATAGGATCAATAC  50

seq1  ACATTATACACAGGTATGAGGTTGTCAGAGGATAAAGAAAAGATATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATACACAGGTATGAGGTTGTCAGAGGATAAAGAAAAGATATTTTA  100

seq1  AAAAGCCAGGAACAAAATTTCAGAGTCTTTACGGTGCTGCGGATGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAGGAACAAAATTTCAGAGTCTTTACGGTGCTGCGGATGGATCT  150

seq1  GGATGTGCAGACTGTAACCATCTCCTGGGCACTCCTCAATCCCTGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGCAGACTGTAACCATCTCCTGGGCACTCCTCAATCCCTGCTCAT  200

seq1  CCCTTCCTTGCCTGCTGCCCACAGCCCCACCTTGCTCAGCCTTGAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTGCCTGCTGCCCACAGCCCCACCTTGCTCAGCCTTGAGCATC  250

seq1  TTGCAGAACATCGTGAATTAGGACATACATGATGGTGTGTGTGTGACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAACATCGTGAATTAGGACATACATGATGGTGTGTGTGTGACATA  300

seq1  AGTGAAATCACTGACGGAAAGGCATCTTGGGAGACGGTTACAGGATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATCACTGACGGAAAGGCATCTTGGGAGACGGTTACAGGATTAAA  350

seq1  TAAAAAGGGCAGAAGATGGGTCTGAGCCAAAACGAGACTCTGTGTGGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGGCAGAAGATGGGTCTGAGCCAAAACGAGACTCTGTGTGGCGT  400

seq1  GCCCGGGGAAACTGAGATAATAGCGAACCAGGATCGAGGCTGGAAAGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGGAAACTGAGATAATAGCGAACCAGGATCGAGGCTGGAAAGGCG  450

seq1  GCTCGGTGGTAATGAGCACCTGCTATTCTCGCAGAGGACGGGGGTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTGGTAATGAGCACCTGCTATTCTCGCAGAGGACGGGGGTTCAGT  500

seq1  TCCCAACTGTGGATAATGCTAGTTCCAGGGGATCTGATGTCCTGGTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTGTGGATAATGCTAGTTCCAGGGGATCTGATGTCCTGGTGTCA  550

seq1  CGTGTGGCGAGCACGCGCGCGCGCGCACACACACACACACACAGACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGCGAGCACGCGCGCGCGCGCACACACACACACACACAGACACAC  600

seq1  ACAGAGTAAATCTTTTTAAAAATGAGTCTATTTTATGGACACTAGAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAAATCTTTTTAAAAATGAGTCTATTTTATGGACACTAGAGGTA  650

seq1  AACATCAGAATTCCTCACCAACCCTAAGACTCACAGCTTCAGCTCCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGAATTCCTCACCAACCCTAAGACTCACAGCTTCAGCTCCAGAC  700

seq1  AGCCCGGCAGGACCCTGAGAGCCTTCTGTTTCTACCAACAATCCCGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGGCAGGACCCTGAGAGCCTTCTGTTTCTACCAACAATCCCGGCTC  750

seq1  TGGCTCACAGACATTTGCCTCCAGGTCAGCTTTATCTGCAAACACTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAGACATTTGCCTCCAGGTCAGCTTTATCTGCAAACACTTTAC  800

seq1  TCAATCTCCTGAGCCCTAAACTATATATATCGTGAGGAAATTATGTTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTCCTGAGCCCTAAACTATATATATCGTGAGGAAATTATGTTAGC  850

seq1  GCGAAGAGGGGGCTGAAAGAGATCTCGTTTATGAGAAAAGCCACAGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGAGGGGGCTGAAAGAGATCTCGTTTATGAGAAAAGCCACAGAGAA  900

seq1  AAAGGGCAAGGGGCAAGAAAAGGGGAAGAAACAGGACGGCTACTGCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAAGGGGCAAGAAAAGGGGAAGAAACAGGACGGCTACTGCTCTG  950

seq1  CCCTGATTTGGCCAGCAGAGGCAGTAGAGAGGCCCCGTCCTGCTGTGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATTTGGCCAGCAGAGGCAGTAGAGAGGCCCCGTCCTGCTGTGGGA  1000

seq1  AAGTCTGCCATCCAGACTAGATCTGAGCTCACCGCCTGGG-TCGCAGTTA  1049
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  AAGTCTGCCATCCAGACTAGTTCTGAGCTCACCGCCTGGGTTCGCAGTTA  1050

seq1  TGCTGTCCAGGAATCTGCTGCTCTTCCTTGGTGTGCTGTTGCTGCTTTCC  1099
      ||  || ||||||| ||||||||||||||||||||||| ||||||||| |
seq2  TGTCGT-CAGGAATTTGCTGCTCTTCCTTGGTGTGCTG-TGCTGCTTT-C  1097

seq1  CTAGCCGAC-GGAGGG  1114
      ||||||||| ||||||
seq2  CTAGCCGACGGGAGGG  1113